Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	73453969	73453969	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CATCGTTCGCGCAGTGGACGG	0.627	11	47
RELT	84957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	73102213	73102213	+	Silent	SNP	C	C	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GGGGGGTTCCCCGCGTTCCAT	0.587	68	110
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	85420400	85420400	+	Silent	SNP	C	C	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	TTTTTACATCCGCTGCTGCTA	0.398	49	141
CD3D	915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	118211223	118211223	+	Silent	SNP	C	C	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GTGTTCCCACCGTTCCCTCTA	0.458	20	51
C11orf63	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	122774732	122774732	+	Silent	SNP	G	G	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	AAGCGTTGCCGGAGTCCACGG	0.532	63	120
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	59272814	59272814	+	Silent	SNP	A	A	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GCCCCACAGCAGCACACTCCA	0.587	13	40
COQ5	84274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	120966932	120966932	+	Missense_Mutation	SNP	C	C	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GCACAGCTCCCGGGGGCCGCC	0.652	15	33
ABCC12	94160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	48162529	48162529	+	Silent	SNP	G	G	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	ATTTCTTTGGGGTACTTTTCC	0.507	33	66
MMP15	4324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	58072238	58072238	+	Missense_Mutation	SNP	G	G	A	rs147283654		TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	AACCTGCGGCGGCGTCGGAAG	0.647	57	158
PSKH1	5681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	67961376	67961376	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	AACCTGCACCGCTCCATATCC	0.607	50	91
SLC44A5	204962	hgsc.bcm.edu;ucsc.edu	37	1	75716928	75716928	+	Silent	SNP	G	G	A	rs114123196	byFrequency	TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	TTAGCAACACGGAGGGACTGG	0.413	31	73
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	78432577	78432577	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CCAGGAGCTATCTGTATTTTG	0.318	21	26
MARK1	4139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	220791711	220791711	+	Silent	SNP	T	T	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	TTGGTTTTAGTAATGAATTTA	0.383	25	66
SSTR3	6753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	37603800	37603800	+	Missense_Mutation	SNP	G	G	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GCATTCTCAGGTTCTGAGGTC	0.632	22	53
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	ATAAGCATGACGACCTATGAT	0.393	32	56
MYH15	22989	hgsc.bcm.edu;broad.mit.edu	37	3	108172944	108172944	+	Missense_Mutation	SNP	C	C	G			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	AGTCTCTCATCTCTTATTGCT	0.393	5	55
YTHDC1	91746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	69179953	69179953	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	ctctcgttcccggtctctttc	0.493	15	22
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	167674845	167674845	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	TGTCCAGTACCGCTATGATGG	0.567	38	118
BTNL3	10917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	180420089	180420089	+	Missense_Mutation	SNP	T	T	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CCCTCGGACATCGGCCTGTAT	0.522	13	2
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	33405883	33405883	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CCCGGCTGTGCGGCTGAAAGC	0.592	24	186
MNF1	84300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	33665498	33665498	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CACATGCCTTTATCTATTTCC	0.478	28	63
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	152831491	152831491	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GGCAGGTTGCTGGTCAACTCT	0.448	35	45
CLN8	2055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	1728624	1728624	+	Missense_Mutation	SNP	A	A	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	TATTGGACCCATAAGAAGACT	0.542	32	181
MLLT3	4300	hgsc.bcm.edu;ucsc.edu	37	9	20360828	20360828	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GCTGCCATCACTTAAGCTAAC	0.418	11	48
OR1L3	26735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	125437655	125437655	+	Missense_Mutation	SNP	G	G	A	rs142972365		TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	AAAGATGCTCGTGAACTTCTT	0.398	61	163
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	107816843	107816843	+	Missense_Mutation	SNP	C	C	T			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	ACTGCCAGGACCAAAGGGTAA	0.363	54	157
MAGIX	79917	broad.mit.edu;ucsc.edu	37	X	49022446	49022446	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CCAGATCCTGGAGGGCCGGAG	0.617	31	78
HSP90AB2P	391634	broad.mit.edu;ucsc.edu	37	4	13339453	13339453	+	RNA	SNP	G	G	A	rs16898654	by1000genomes	TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GATGCCACCCGTCTGAGCTGC	0.428	9	15
SLC22A8	9376	broad.mit.edu;ucsc.edu	37	11	62763251	62763251	+	Missense_Mutation	SNP	T	T	C			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GTACTTGGCCTTGGCCAAGGA	0.597	80	169
SI	6476	broad.mit.edu;ucsc.edu	37	3	164767582	164767582	+	Missense_Mutation	SNP	G	G	A			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	ATTTTACCAGGAGTAAACGGT	0.264	17	58
SYNJ2	8871	broad.mit.edu;hgsc.bcm.edu	37	6	158504625	158504627	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	ACTATGAGTCAGAAGGTTAGTGA	0.517	33	142
KMT2C	58508	broad.mit.edu;hgsc.bcm.edu	37	7	151845685	151845686	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	GCACCAGCCTGAGTCTCATAGA	0.515	37	177
UCK1	83549	broad.mit.edu;hgsc.bcm.edu	37	9	134404915	134404915	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	ACCTCCACCGTTTTGCCCTCC	0.557	47	115
LRRC43	254050	broad.mit.edu;hgsc.bcm.edu	37	12	122677545	122677545	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CTCTGCCCGTCCCCAGGGTAA	0.577	10	35
HTR2A	3356	broad.mit.edu;hgsc.bcm.edu	37	13	47409749	47409750	+	Frame_Shift_Del	DEL	AA	AA	-	rs143289722		TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CCTGTAGCCCAAAGACTGGTAT	0.396	22	86
TYK2	7297	broad.mit.edu;hgsc.bcm.edu	37	19	10479066	10479067	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CGAAGAGGGCAAAGAGATTGAA	0.54	48	110
LGALS13	29124	broad.mit.edu;hgsc.bcm.edu	37	19	40097866	40097868	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	CTTGTAGATAAAGGTCAATGGCA	0.458	31	40
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42796905	42796906	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-E1-5319-01A-01D-1893-08	TCGA-E1-5319-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d252a54e-0377-4b3e-8228-26108ea704fa	1121c5c3-e239-4edf-aa09-af5dbfabaaea	TGGTCTACACTGTGGCCACCAG	0.668	26	73
