Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	1075719	1075719	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CAAGACCTTCGACGGGGACGT	0.622	8	41
OR5AS1	219447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55798086	55798086	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	ATTTTCTTAGCAACTTATCTT	0.348	7	58
PDGFD	80310	hgsc.bcm.edu;broad.mit.edu	37	11	103870852	103870852	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	GTATTCTCCTGAGAGTGAAGC	0.458	14	222
RDX	5962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	110134885	110134885	+	Silent	SNP	A	A	C			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	ATTCCTCAGAAACATCTTCAG	0.343	8	60
SIK2	23235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	111487048	111487048	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	AATAATGAAAATGTTAGACCA	0.373	12	79
TMEM120B	144404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	122190038	122190038	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	TGGCAGGTTCGCCTACAAGGA	0.567	12	110
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	20638648	20638648	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	TTTGGCGAAGAATATGAGGAA	0.343	4	11
CEP170B	283638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	105353382	105353382	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	TGTGGATGCCGAGTGTGAGGG	0.662	31	46
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	28460828	28460828	+	Missense_Mutation	SNP	G	G	A	rs140060040	byFrequency	TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CATGAGCAGCGTGATCCACTG	0.632	13	16
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	63901366	63901366	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CAGTTGTTGATGGCATAGCGC	0.602	10	32
ANKS4B	257629	hgsc.bcm.edu;broad.mit.edu	37	16	21261086	21261086	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CTGGGGAAACACTCCTCTACA	0.463	8	93
BCKDK	10295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	31121057	31121057	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CAAGGGCTTCCGCTGCCTTCC	0.587	12	108
GID4	79018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	17948505	17948505	+	Missense_Mutation	SNP	T	T	G			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	ACTTGAAGATTAAAGGCCTTA	0.483	18	110
CLEC4M	10332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	7833752	7833752	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CAGTGGAGAACCCAACAATAG	0.512	29	213
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42799059	42799059	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CCGTGAGGTGCGCCAGAAGAT	0.632	9	71
XRN2	22803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	21336757	21336757	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	TTATTTGTGGGGAAACATCAC	0.383	18	158
TTC27	55622	hgsc.bcm.edu;ucsc.edu	37	2	32891715	32891715	+	Missense_Mutation	SNP	A	A	T			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CTTTGGGAAAAAGAACACGGT	0.383	8	67
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	55544946	55544946	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CATGAGTGAGGTACTTTGGGA	0.333	15	102
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	ATAAGCATGACGACCTATGAT	0.393	32	80
GTF2E1	2960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	120489647	120489647	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	AAAGATGCACGCACACTTTTG	0.423	54	370
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178951958	178951958	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	TTTCTCAATGATGCTTGGCTC	0.388	11	110
ANKH	56172	hgsc.bcm.edu;ucsc.edu	37	5	14769169	14769169	+	Silent	SNP	A	A	G			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	TGCTGTTCACAAACACCAGGC	0.572	12	72
MOCS2	4338	hgsc.bcm.edu;broad.mit.edu	37	5	52402983	52402983	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	AAGCACGAGGAGCTGATCTCC	0.408	8	82
RHOBTB3	22836	hgsc.bcm.edu;broad.mit.edu	37	5	95119548	95119548	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CGAGATGTACCAAGTGTCCAG	0.468	16	222
TCOF1	6949	hgsc.bcm.edu;broad.mit.edu	37	5	149755650	149755650	+	Silent	SNP	A	A	G			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CTCAGGCAAAACCAGCTCTGA	0.572	17	239
MED7	9443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	156566369	156566369	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	TTCTTGAATATTTTCATCCGT	0.438	10	90
PHIP	55023	hgsc.bcm.edu;ucsc.edu	37	6	79713469	79713469	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	GCTACTGGACCCAAAGCCAAA	0.398	5	44
ANKRD46	157567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	101534835	101534835	+	Missense_Mutation	SNP	T	T	A			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CCCACTCACATAATAAGCAAT	0.488	12	81
RAD21	5885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	117869555	117869555	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	CCTTATATTGATCTTCATATT	0.333	16	126
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	139412675	139412675	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	ATTGACAGGGTTGGTGTCGCA	0.662	4	20
ZCCHC12	170261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	117959418	117959418	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	agtcaatggcgtcctgccaga	0.557	18	84
COL4A6	1288	broad.mit.edu;ucsc.edu	37	X	107402954	107402954	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	GGTGCTGAAGCGGGGCAGACA	0.562	39	116
ARID1A	8289	broad.mit.edu;hgsc.bcm.edu	37	1	27059237	27059237	+	Frame_Shift_Del	DEL	A	A	-			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	AAGGGAGGGCAAGAAGATATG	0.488	19	88
PIK3R1	5295	broad.mit.edu;hgsc.bcm.edu	37	5	67589217	67589222	+	In_Frame_Del	DEL	TTGAAT	TTGAAT	-			TCGA-FG-5962-01B-11D-1893-08	TCGA-FG-5962-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	28e93aff-9ec4-4fcf-a469-74d8b6190991	57a1f9a5-e7cd-478d-b678-8e1992d9b223	AGTTCTGTGGTTGAATTAATAAACCA	0.335	24	43
