Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	115401191	115401191	+	Missense_Mutation	SNP	C	C	T	rs138124439		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TCCTTCATAGCGGCCTCTCAT	0.438	29	116
PRSS23	11098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	86519582	86519582	+	Missense_Mutation	SNP	C	C	A	rs150416218		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	ACGTCAAAGACGAGACCTATG	0.557	17	133
ADAMTS15	170689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	130341228	130341228	+	Silent	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GGGTGTGTGGGGGAGACAATA	0.572	14	73
PIP4K2C	79837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	57989740	57989740	+	Missense_Mutation	SNP	C	C	T	rs144510690		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CTCCTACGATCGGACTCTGGT	0.522	26	117
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	25479612	25479612	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TCTGCTCCTCCTGGACTTGCT	0.428	11	71
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	38724284	38724284	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TGTTCTCTGCGGCACGGGGCT	0.617	24	150
RTN1	6252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	60212786	60212786	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AAGTCCAAGTCTTTATCTTCC	0.448	44	244
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	35274299	35274299	+	Nonsense_Mutation	SNP	G	G	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TTCCTCACCTGATGAACCACA	0.343	13	77
DUOX2	50506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	45389890	45389890	+	Silent	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GGTGGGAGGCGAAGACATACA	0.617	28	94
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	85467219	85467219	+	Missense_Mutation	SNP	G	G	A	rs150926643		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TTTGCAGACCGAGGCTCCATT	0.567	9	61
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	94943169	94943169	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AGTATTAGGACTTTTACTCCC	0.448	22	146
SNX29	92017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	12571690	12571690	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CTACAACTTCCCACCCAAAAA	0.438	6	38
ADCY7	113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	50347883	50347883	+	Silent	SNP	C	C	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TACTGAAGCCCAAGTTCAGCG	0.617	14	81
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	55361633	55361633	+	Silent	SNP	C	C	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TCATGCTGGCCATCATCACCA	0.572	22	116
ZNF276	92822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	89804475	89804475	+	Missense_Mutation	SNP	T	T	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GGACTTTGCCTGTGACCAGTG	0.597	11	47
USP6	9098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	5072170	5072170	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TTTGGTACCACGAGACCCGGC	0.473	48	244
CUEDC1	404093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	55946527	55946527	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GGCATCTTCAGACACAGCGGG	0.617	7	34
MYOC	4653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	171605340	171605340	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CAGGTTTGTTCGAGTTCCAGA	0.527	37	150
SNRPE	6635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	203832798	203832798	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CAGAGATCGCGGATTCAGGTG	0.473	630	142
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	51872726	51872726	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CTTAGGAAAACGGGCGGGACA	0.488	9	69
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	45616592	45616592	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GTTACATTTCGTATGGGAATC	0.433	15	74
PPP3R1	5534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	68413615	68413615	+	Silent	SNP	A	A	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AGAATTCTTCAAAGGATATTC	0.333	17	114
CHST10	9486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	101009737	101009737	+	Silent	SNP	C	C	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GTTTCTGGTACCCAAAGAGCT	0.448	19	123
IL1A	3552	hgsc.bcm.edu;ucsc.edu	37	2	113537124	113537124	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TGATCATTGGCTCGAATTATA	0.413	6	58
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	128341815	128341815	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GGACTATATCCACTACACCGA	0.577	15	92
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179396156	179396156	+	Silent	SNP	A	A	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	ATGAAACAGCATACGCCTCTG	0.473	34	129
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179585342	179585342	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CACATCAGAACCTTTAAGAGC	0.393	7	35
PTH2R	5746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209309554	209309554	+	Silent	SNP	C	C	A	rs143390240		TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	ATAATCTCATCTTTGTGGCTT	0.413	46	217
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	38755451	38755451	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AGACTTACCCGCATGCCTTCA	0.552	26	107
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	47098400	47098400	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	ATGGTTGCTTGAGACTGTGCA	0.463	14	92
ERC2	26059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	56026258	56026258	+	Silent	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TCATCCTGGAGTCATCTTCAA	0.428	41	226
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	108773665	108773665	+	Nonsense_Mutation	SNP	T	T	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AATTCCTGTTTATTATGGGAT	0.383	19	76
PRLR	5618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	35065590	35065590	+	Silent	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GCAGCCAGGGCGTATCCTGGT	0.483	26	140
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140176926	140176926	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AGAATCAGAATACGTAGGAAA	0.403	14	51
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140736510	140736510	+	Silent	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CACCCCGCTCCGCAGATTCCG	0.592	40	210
RARS	5917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	167921621	167921621	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CTAGTGAATGGAGTTCAACTA	0.343	15	101
FARS2	10667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	5431389	5431389	+	Silent	SNP	A	A	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TGATGGAACAACAACTGGTCA	0.458	20	125
C2	717	hgsc.bcm.edu;ucsc.edu	37	6	31912793	31912793	+	Missense_Mutation	SNP	T	T	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GAGCGGAGATTCAGGTTTTTT	0.547	43	173
SPDEF	25803	hgsc.bcm.edu;broad.mit.edu	37	6	34508917	34508917	+	Silent	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TCTGTCCACAGGAGCCACTTC	0.642	8	10
DSE	29940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	116758080	116758080	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CAAACGCTATAAATTTGTGGA	0.423	8	50
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	128489530	128489530	+	Silent	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AGAACCATGACGGTACCTTTG	0.612	11	94
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	35717307	35717307	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TCCTACCCCTCGCAACAGTTG	0.617	31	122
ANXA1	301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	75783993	75783993	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TATGGTTTCCCGTTCTGAAAT	0.388	30	137
NIPSNAP3A	25934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	107513272	107513272	+	Silent	SNP	C	C	T	rs146388542	byFrequency	TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CCAGACAATACGATGGAATAT	0.363	15	105
IL1RAPL1	11141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	29972757	29972757	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TGCTTGAAAAGCATTATGGAT	0.373	16	80
TMEM47	83604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	34648526	34648526	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CATAACCCCAGTTGAACTCAT	0.428	21	126
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	34962764	34962764	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AATGCCTGGCGTCATTGAAAA	0.438	52	263
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	54776462	54776462	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	ATCACAGGCACATCTGGGCCA	0.597	17	54
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	54785300	54785300	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GTCGTCACGCCGGCCGTGGGC	0.597	12	37
MAGEE2	139599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	75003755	75003755	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	ACAAGGAGGTAGATGTGCTCA	0.433	24	166
CERS3	204219	broad.mit.edu;ucsc.edu	37	15	100996220	100996220	+	Missense_Mutation	SNP	A	A	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TCGAGGTGATACATAGGCAAG	0.378	5	27
MYO1D	4642	broad.mit.edu;ucsc.edu	37	17	31107759	31107759	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TTCACAGAAACGACGACTTCT	0.423	10	52
TSPAN33	340348	broad.mit.edu;ucsc.edu	37	7	128802337	128802337	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GGGTCCCTCCGCGAGAACATC	0.627	7	48
LRRC37A5P	652972	broad.mit.edu;ucsc.edu	37	9	114371450	114371450	+	RNA	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AGTGCAGTCCGTCTTCAAGGT	0.493	48	175
TRIM60	166655	broad.mit.edu;ucsc.edu	37	4	165962269	165962269	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TAGTTCTGGCCGACATTACTG	0.433	20	108
CLEC4C	170482	broad.mit.edu;ucsc.edu	37	12	7883393	7883393	+	Splice_Site	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CTATACTCACGTGACATTTTC	0.433	19	109
CHD4	1108	broad.mit.edu;ucsc.edu	37	12	6702730	6702730	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CCGCTCCCAGTTGATGATGGT	0.532	28	159
GRPR	2925	broad.mit.edu;ucsc.edu	37	X	16168588	16168588	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CACCAACCAGACCTTCATTAG	0.502	37	152
ZNF691	51058	broad.mit.edu;ucsc.edu	37	1	43317456	43317456	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	ACTCACTTGGGCGAACAGGCT	0.552	6	54
AJ271736.10	0	broad.mit.edu;ucsc.edu	37	X	155254994	155254994	+	RNA	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TGCCCCCACCGCAACAGCCAC	0.637	4	28
ABCA13	154664	broad.mit.edu;ucsc.edu	37	7	48320993	48320993	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TCAGAAGCCATGGAGATGCTG	0.438	4	29
MUC17	140453	broad.mit.edu;ucsc.edu	37	7	100679593	100679593	+	Silent	SNP	A	A	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GAAGTCCTCTATTAACAAGTA	0.493	68	590
PLXNA3	55558	broad.mit.edu;ucsc.edu	37	X	153698493	153698493	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CTACCTGACACGGCTGCTGGC	0.617	9	51
IL1RL1	9173	broad.mit.edu;ucsc.edu	37	2	102957203	102957203	+	Silent	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TGACTGAGGACGCAGGTGATT	0.423	23	94
LRFN5	145581	broad.mit.edu;ucsc.edu	37	14	42355895	42355895	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CTGTCCAAAGCGTTGTGTCTG	0.398	5	38
KMT2E	55904	broad.mit.edu;ucsc.edu	37	7	104753522	104753522	+	Silent	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CTTTGGGACCGGGACCCCAGC	0.532	43	225
PCDHA1	56147	broad.mit.edu;ucsc.edu	37	5	140166068	140166068	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TCGCCTGTTCCGGGTGGCGTC	0.587	30	127
ANKRD18DP	348840	broad.mit.edu;ucsc.edu	37	3	197803763	197803763	+	RNA	SNP	G	G	A			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	CAGTGTTGCCGTAGACATCCT	0.458	4	27
UTP20	27340	broad.mit.edu;ucsc.edu	37	12	101750464	101750464	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GGAAGCTAATCTGCCAAGGTA	0.363	3	29
AKIP1	56672	broad.mit.edu;hgsc.bcm.edu	37	11	8940912	8940912	+	Frame_Shift_Del	DEL	T	T	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	GACCTCTACATAGAAGTATAT	0.468	30	117
CRYL1	51084	broad.mit.edu;hgsc.bcm.edu	37	13	21013857	21013859	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	TGAGCAAAAATCTTCTTCTTCAG	0.419	12	66
F8	2157	broad.mit.edu;hgsc.bcm.edu	37	X	154159063	154159063	+	Frame_Shift_Del	DEL	G	G	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	AGTCAACAAAGCAGGTCCATG	0.343	26	135
RB1	5925	broad.mit.edu	37	13	48955530	48955533	+	Frame_Shift_Del	DEL	ATTT	ATTT	-			TCGA-FG-6688-01A-11D-1893-08	TCGA-FG-6688-10A-01D-1893-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2f93c396-7e42-4ae7-b954-028d5214671d	3a55f162-2e11-46f9-8c0a-4a1f473997ff	ATGATAAAACATTTAGAACGATGT	0.328	9	36
