Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	27381396	27381396	+	Missense_Mutation	SNP	G	G	C			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TCCACCATTTGCTGCTTTTTT	0.323	7	28
TLL2	7093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	98144479	98144479	+	Missense_Mutation	SNP	C	C	T	rs141438733		TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	AGCTTGGCGTCGGGGGACAGG	0.622	73	114
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu	37	10	103577687	103577687	+	Silent	SNP	C	C	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	GAGCTGCCGGCGGCTCCAGCG	0.726	8	7
CUEDC2	79004	hgsc.bcm.edu;broad.mit.edu	37	10	104184887	104184887	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	GTCGGCCTCCGGGAGGTGTGT	0.602	6	84
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	1087506	1087506	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	GACACGGGTGGGGACTGTGAG	0.652	15	31
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55587473	55587473	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	GCCTATGACCGCTTCGTGGCC	0.458	44	143
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	71942617	71942617	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TATCAGCCATGTCAGTACGTC	0.562	32	73
C12orf50	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	88390403	88390403	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TCAGGGGTCTTTGTCCATAAA	0.289	10	59
GPR180	160897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	95273351	95273351	+	Silent	SNP	A	A	G			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TCGCTTCCCAAATTCAGATGT	0.373	12	51
HEATR5A	25938	hgsc.bcm.edu;ucsc.edu	37	14	31833463	31833463	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	CACTGACGGTGTTTTCAAAGG	0.294	7	3
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	81946063	81946063	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	ATGTCATAAAAACGTTTCGCA	0.383	11	62
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	2374516	2374516	+	Silent	SNP	G	G	A	rs138952710	by1000genomes	TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	AGTCCTTCTCGGAGGGAAAGC	0.587	26	53
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	27100381	27100381	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	GTATCAACAGCAACAGCAGGT	0.498	63	109
TRMT13	54482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	100613719	100613719	+	Missense_Mutation	SNP	T	T	G			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	GGAATTCCATTATTTCCAGCG	0.428	34	10
FTCD	10841	hgsc.bcm.edu;broad.mit.edu	37	21	47574183	47574183	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	GAAGGGCCTGCGTCCACATCC	0.677	3	48
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	ATAAGCATGACGACCTATGAT	0.393	45	54
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu	37	3	47447437	47447437	+	Nonsense_Mutation	SNP	C	C	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	ATTTCCAGTGCGCAGCCGGCG	0.597	4	51
PIGZ	80235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	196675277	196675277	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	GACGTAGGAACCAGACAGCAG	0.617	11	33
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu	37	4	79204003	79204003	+	Nonsense_Mutation	SNP	C	C	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	ATGGCCCTTGCAAGGTGTGTG	0.532	8	132
NPNT	255743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	106890076	106890076	+	Missense_Mutation	SNP	C	C	A	rs139540458		TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TGAAAAAAGGCGTGGTCACAC	0.448	16	19
PPP2CA	5515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	133534841	133534841	+	Missense_Mutation	SNP	A	A	T			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	CGATAACAATAGTTTGGAGCA	0.373	16	113
KIF20A	10112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	137521298	137521298	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TTGGCCCTACGGCGGTCACAA	0.507	52	145
BAG6	7917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	31612853	31612853	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	AGGACTCGACATTGGTAGAAG	0.662	58	76
DST	667	hgsc.bcm.edu;ucsc.edu	37	6	56483940	56483940	+	Missense_Mutation	SNP	T	T	G			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TTTATGCAAGTGTTCATTTGT	0.348	25	155
RFX6	222546	hgsc.bcm.edu;broad.mit.edu	37	6	117246787	117246787	+	Missense_Mutation	SNP	T	T	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	CTGCACCAGTTCCCTGCTGGG	0.532	6	67
SRPK2	6733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	104783594	104783594	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	AGTTTCACCTCTGGGCAGTAT	0.498	17	99
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	37730001	37730001	+	Silent	SNP	G	G	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TGGGAAGAGGGGGCGCCACTT	0.557	30	80
LIMA1	51474	broad.mit.edu;ucsc.edu	37	12	50598436	50598436	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TCCAGATTTCGTCTACTCTCA	0.423	56	71
OR2G6	391211	broad.mit.edu;ucsc.edu	37	1	248685220	248685220	+	Silent	SNP	C	C	T			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	AAGACAAAACCATGAGCTACG	0.517	63	94
TOM1	10043	broad.mit.edu;ucsc.edu	37	22	35726358	35726358	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	CCGCACGTGCCGAGCCATGCA	0.537	96	90
HEATR1	55127	broad.mit.edu;ucsc.edu	37	1	236738051	236738051	+	Silent	SNP	C	C	T	rs142628625	byFrequency	TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	CTAGACTCTTCGGATCCTCAT	0.423	28	43
NLE1	54475	broad.mit.edu;ucsc.edu	37	17	33464163	33464163	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	TCCCAGATCCGCACACTGCCA	0.617	18	33
ARID1A	8289	broad.mit.edu	37	1	27106229	27106230	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-FG-7637-01A-11D-2086-08	TCGA-FG-7637-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	aea26718-ba34-444f-9122-0faf73b62ea1	c2346512-f289-4ac1-a8c9-460c4f3f0126	AGCCCAGCACAGAGCCACCGGA	0.53	22	137
