Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
FERMT3	83706	hgsc.bcm.edu;broad.mit.edu	37	11	63988497	63988497	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	GCTCACCCCACGGATCCTGGA	0.652	8	128
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	108381318	108381318	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	CAGTGGGTTGCACTCCACTGT	0.483	56	47
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu	37	12	59276787	59276787	+	Silent	SNP	G	G	A			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	GCTGGCAATCGCACAAAAGGC	0.403	4	70
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7574012	7574012	+	Nonsense_Mutation	SNP	C	C	A	rs17882252		TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	CGGAACATCTCGAAGCGCTCA	0.537	12	55
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7579311	7579311	+	Splice_Site	SNP	C	C	T	rs68140816		TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	GGGCAACTGACCGTGCAAGTC	0.532	56	67
CWC25	54883	hgsc.bcm.edu;broad.mit.edu	37	17	36958970	36958970	+	Silent	SNP	C	C	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	ACTTCCCATCCCGGGAGTCCA	0.547	9	114
ERCC1	2067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	45916941	45916941	+	Silent	SNP	A	A	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TTACTTTCTGAGGGCCCAGGC	0.522	13	131
DNAJC6	9829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	65858364	65858364	+	Silent	SNP	T	T	G			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	CGCCAGCGGCTCCTCCCACCA	0.582	7	56
C20orf26	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	20123549	20123549	+	Missense_Mutation	SNP	A	A	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	ATAGTCGAGGAGTTGCAGGAA	0.488	6	19
ADSL	158	hgsc.bcm.edu;broad.mit.edu	37	22	40762494	40762494	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	ATATGAAAGCGTGATGAAGGT	0.358	5	55
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	171509614	171509614	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	AAAAGGAGACTCTTTTGCTCA	0.418	8	71
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	ATAAGCATGACGACCTATGAT	0.393	34	64
RPL37A	6168	hgsc.bcm.edu;broad.mit.edu	37	2	217364056	217364056	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	GGCCTCCCTCCGGAAAATGGT	0.502	8	86
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu	37	2	238277572	238277572	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TTCAGTGGGGACCCCCCTCTG	0.562	5	59
BRD8	10902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	137501597	137501597	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	GCAATATCCATCTTCTCAGCC	0.458	9	60
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	74491008	74491008	+	Silent	SNP	T	T	C			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TATTGACAGATGCAAACCTCA	0.323	6	46
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	90397120	90397120	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	AAGATGTTTCCGCAAAGACAA	0.403	13	66
FBXL18	80028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	5540405	5540405	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TTGCGGGGCATGGCGGAGGAG	0.672	19	88
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	17236520	17236520	+	Silent	SNP	G	G	A			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TAAATGACCTGGAGAAATTGA	0.368	11	49
VSIG4	11326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	65253475	65253475	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	ACATGCAGGCGGCCCTGGTAC	0.547	19	75
UNC93A	54346	broad.mit.edu;ucsc.edu	37	6	167728856	167728856	+	Silent	SNP	C	C	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TTGTGGAGTGCGTGGAGTCCA	0.542	30	360
IGFBP2	3485	broad.mit.edu;ucsc.edu	37	2	217525369	217525369	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	CAGTGCTGGCCGGAAGCCCCT	0.612	11	63
HIVEP2	3097	broad.mit.edu;ucsc.edu	37	6	143095693	143095693	+	Silent	SNP	T	T	C			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	CAAACAGTTGTGCTGATGCTG	0.498	29	207
FLRT2	23768	broad.mit.edu;ucsc.edu	37	14	86089274	86089274	+	Silent	SNP	C	C	T	rs146568257	byFrequency	TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	GCATAGTCAGCGGTGAGAAGC	0.517	45	96
MUC16	94025	broad.mit.edu;ucsc.edu	37	19	8987333	8987333	+	Splice_Site	SNP	G	G	A			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TGACCACCCCGGCTAGGGCAG	0.597	14	112
TNFRSF9	3604	broad.mit.edu;ucsc.edu	37	1	7998823	7998823	+	Missense_Mutation	SNP	C	C	T	rs9657963	byFrequency	TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TGTCCACCTGCGCTGGAGAAA	0.408	17	157
ADAMTS9	56999	broad.mit.edu;ucsc.edu	37	3	64526873	64526873	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	CGCCGGCTCCCGTTATAGGGA	0.473	23	120
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76890105	76890106	+	Frame_Shift_Ins	INS	-	-	CATA			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TTACCAAGGCCCATACAGTGGG	0.371	16	61
TCF12	6938	broad.mit.edu	37	15	57565437	57565438	+	Frame_Shift_Ins	INS	-	-	TTGAC			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	GCAGTCATCCTTAGTCTAGAAC	0.441	9	51
ATRX	546	broad.mit.edu	37	X	76938654	76938655	+	Frame_Shift_Ins	INS	-	-	T			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TACGCTTATCCTTTTTTCTCAC	0.356	9	64
ATRX	546	broad.mit.edu	37	X	76845302	76845302	+	Splice_Site	SNP	A	A	G			TCGA-FG-8182-01A-11D-2253-08	TCGA-FG-8182-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2aeaab9f-4459-4be8-91e7-e0746cbd671c	705290ff-c3b5-4e53-956d-05fc3825ccb7	TTTGTAGCTCACCTTTATAAA	0.328	3	8
