Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
LOXL4	84171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	100012144	100012144	+	Silent	SNP	G	G	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	GACAGAAGCTGGCCTTGTGCC	0.532	28	282
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	47755624	47755624	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	GATTGTCTATTAATGCCTAGA	0.328	27	57
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	82877743	82877743	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	ATCTGGTTGGGAAGAAAATAA	0.318	37	66
DBX2	440097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	45410365	45410365	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	TTGGAATTCCGCCATTTCATC	0.403	17	184
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	25428134	25428134	+	Silent	SNP	G	G	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	TCAGTGAACAGAAAGTGTCTG	0.403	34	39
CCDC70	83446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	52439604	52439604	+	Silent	SNP	G	G	A	rs112168960		TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	GGTCCCTGGCGGCATCCTCTC	0.507	19	173
CDKN3	1033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	54884631	54884631	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	AGACAGCCTGCGAGACCTAAG	0.458	14	22
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	95670323	95670323	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	CTCAATGATTCCTTTGCCACT	0.468	17	47
HDC	3067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	50534698	50534698	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	ACTGAGGGAGCGCACCGTCTT	0.542	119	236
GGT6	124975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	4463042	4463042	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	CCGGGCAGCCCGCCAGCCTTG	0.652	10	58
KRT35	3886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39635168	39635168	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	CTCCAGAACTCGGTTCAGGTC	0.552	8	85
NOL4	8715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	31538334	31538334	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	CCTCGGTCTACACTCTCATTT	0.448	69	167
BIRC8	112401	hgsc.bcm.edu;broad.mit.edu	37	19	53793157	53793157	+	Silent	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	TAGTGTCTTTCTGAGCGCTCA	0.408	3	62
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	131521709	131521709	+	Silent	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	TCAGCTCAAACGAACAGCCCC	0.652	12	10
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	ATAAGCATGACGACCTATGAT	0.393	40	99
SETMAR	6419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	4358185	4358185	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	gaagaactcaatgtcaaccat	0.448	7	15
CLDN16	10686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	190120187	190120187	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	GATGGGATTCGCACCTGTGAT	0.488	29	216
GUCY1A3	2982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	156631972	156631972	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	TCCCGGCATCATAAAGGCAGC	0.458	49	116
OR2Y1	134083	hgsc.bcm.edu;broad.mit.edu	37	5	180166657	180166657	+	Silent	SNP	G	G	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	GGTGCATGATGGCCATGTAGT	0.587	4	76
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	64394227	64394227	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	AAGGTGCAGCCGAAATAGCGG	0.403	36	82
DPY19L1	23333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	34977700	34977700	+	Missense_Mutation	SNP	T	T	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	GCTTTCCGACTATACATTGAG	0.328	20	19
TSPAN33	340348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	128804343	128804343	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	GAGATCATCAACAATGCCATT	0.493	156	227
TBXAS1	6916	hgsc.bcm.edu;broad.mit.edu	37	7	139529240	139529240	+	Silent	SNP	G	G	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	CCATGGTGACGGTGGCCCTGT	0.572	4	70
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	36170121	36170121	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	GGTGTACTTCCGGAAGGAGGA	0.488	23	44
ALDH1A1	216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	75520934	75520934	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	ACTTACCACGCCATAGCAATT	0.343	17	61
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu	37	9	139412245	139412245	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	CTGGTCCAGGCAGGTGGCGTC	0.677	6	126
CXorf22	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	35966455	35966455	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	GAATACCACGGCCAATTACCC	0.413	74	152
CXorf22	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	35993797	35993797	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	AGGTCTTTCACCTTTACAGTG	0.383	40	67
GRIA3	2892	hgsc.bcm.edu;broad.mit.edu	37	X	122598965	122598965	+	Splice_Site	SNP	T	T	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	AGCATTAAGGTGGGTGGAATA	0.393	9	128
CATSPERD	257062	broad.mit.edu;ucsc.edu	37	19	5727283	5727283	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8186-01A-11D-2253-08	TCGA-FG-8186-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	729f5374-cda6-4f84-8843-8d638ede22d1	033c9e3a-1498-4e9d-bbb1-2ab70851c8b8	CTCTAGGACCGCCTGTATTTT	0.338	8	95
