Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	26432481	26432481	+	Silent	SNP	A	A	G			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	TACTTTCCCTACTTGATGAAG	0.403	29	35
SPDYC	387778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	64939962	64939962	+	Silent	SNP	A	A	G			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	AGATTTTTCCATGGGCCCTGG	0.562	56	99
MTNR1B	4544	hgsc.bcm.edu;broad.mit.edu	37	11	92714797	92714797	+	Silent	SNP	T	T	C			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	CCATCGCCATTAACCGCTACT	0.607	6	63
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	89093251	89093251	+	Missense_Mutation	SNP	G	G	C			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GCCCTTTTTTGCTAAGAAGAG	0.463	18	33
ARHGAP11A	9824	hgsc.bcm.edu;broad.mit.edu	37	15	32917835	32917835	+	Splice_Site	SNP	G	G	C			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	AGTGTAGGAGGTAAGTGGCGG	0.408	9	105
CAPN15	6650	hgsc.bcm.edu;broad.mit.edu	37	16	598068	598068	+	Silent	SNP	C	C	T			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GCGTCCTGCCCGAGCGCCCGG	0.751	9	14
SF3B3	23450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	70594469	70594469	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	AAGCTCTTCCGAGTCCGAATG	0.522	5	93
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7579350	7579350	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GAATGCAAGAAGCCCAGACGG	0.607	68	36
MFAP4	4239	hgsc.bcm.edu;broad.mit.edu	37	17	19290401	19290401	+	Silent	SNP	G	G	A			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	TCTGTGGCCAGGGGCCTCTGG	0.597	14	19
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	42483311	42483311	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	TTTCTTTGCTCTGCCAACTCA	0.368	11	85
PRKCA	5578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	64738870	64738870	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	AGATTATATCGCCCCAGAGGT	0.488	9	23
KLHL14	57565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	30322013	30322013	+	Splice_Site	SNP	C	C	A			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	AGAGCGAATTCTTCACCCAAA	0.433	12	80
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu	37	19	53958931	53958931	+	RNA	SNP	C	C	G			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GTGGCAAGACCTTTAGTCACA	0.408	15	165
ZMYM6	9204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	35476495	35476495	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	AGCAGAGCCACGGATGGAGCT	0.547	9	83
SEC16B	89866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	177909803	177909803	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GTCTCCACTGCGTCTTTCTAA	0.562	29	32
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	236144995	236144995	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GTCCAGCTTCGCCACTTCTAT	0.498	30	52
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	237754205	237754205	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GTGCCCGATCGTGTTGACAAA	0.428	9	31
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	141607789	141607789	+	Silent	SNP	G	G	A			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	TCACAGTAACGTCATCAATAT	0.368	12	60
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	ATAAGCATGACGACCTATGAT	0.393	32	59
SNX18	112574	hgsc.bcm.edu;broad.mit.edu	37	5	53815358	53815358	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	AGCGCTGTATCAGGGGCATCT	0.557	8	140
NKX3-1	4824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	23539038	23539038	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GATCACCTGAGTGTGGGAGAA	0.577	17	142
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76909629	76909629	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	TTAATACGTCGCCTTTTCTTT	0.328	42	14
IBTK	25998	broad.mit.edu;ucsc.edu	37	6	82912294	82912294	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	TGTAAACAAGACAGTTTCAAC	0.343	15	126
PSG1	5669	broad.mit.edu;ucsc.edu	37	19	43382350	43382350	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	AGAACATCCTTCCCCTCGGAA	0.473	37	301
FAM189A2	9413	broad.mit.edu;ucsc.edu	37	9	72000864	72000864	+	Splice_Site	SNP	G	G	T			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GAGGAGAGAGGTGATGTCATT	0.577	16	39
CDK16	5127	broad.mit.edu;ucsc.edu	37	X	47082981	47082981	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	GAAGATCAAACGGCAGCTGTC	0.532	4	26
SMARCA4	6597	hgsc.bcm.edu	37	19	11170839	11170839	+	Silent	SNP	T	T	C			TCGA-FG-8191-01A-11D-2253-08	TCGA-FG-8191-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcc461af-d70d-4fca-ae7f-3f09367b6d51	6a19fe53-192d-492a-98ba-54d24a6f3574	TGAGTGACGATGACAGTGAGG	0.687	5	0
