Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	1102176	1102176	+	Silent	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCTGCACCCACGTGCCCTGCA	0.617	47	58
TOLLIP	54472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	1298448	1298448	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GGCAGGGCCACGGGCACCATG	0.607	57	56
ZNF215	7762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	6953559	6953559	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CTGTCTCTACGTGAACAAAGA	0.473	49	61
MRGPRX2	117194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	19077575	19077575	+	Silent	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GGCAGCGCTCGGTGCTGACGG	0.602	42	72
AMBRA1	55626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	46419176	46419176	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GTTGGCTCCCGCCCAGGGGTA	0.672	32	45
OR5R1	219479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	56185615	56185615	+	Silent	SNP	A	A	G			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TAGATAACTAAAAACACCCCA	0.418	55	69
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	93796832	93796832	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GCACATCGACGCCCCAAAGGA	0.522	65	84
ADAMTS15	170689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	130340895	130340895	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CACTCTCGCCGTGGCATGGGT	0.597	97	129
CD163	9332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	7635288	7635288	+	Silent	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AGAATAATGCGACGAAAATGG	0.423	61	77
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	110234444	110234444	+	Silent	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCCAGTCCTTGAACTTGCGGG	0.607	39	59
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	31576337	31576337	+	Silent	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AAATTCCAAGGAAATGAAACA	0.378	51	66
L2HGDH	79944	hgsc.bcm.edu;broad.mit.edu	37	14	50735882	50735882	+	Splice_Site	SNP	G	G	A	rs118204020		TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	ATTACCTACCGGATAAATATT	0.388	32	46
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	91770249	91770249	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CTCCTTGGCCGTGTGGTGGTT	0.657	56	75
IREB2	3658	hgsc.bcm.edu;broad.mit.edu	37	15	78730692	78730692	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GGACGCCCCAAAAGCAGGTCA	0.662	7	9
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	86940603	86940603	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GCAGGACATCGTCCATATCAG	0.403	18	30
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu	37	16	2820396	2820396	+	Silent	SNP	C	C	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CAGGGACTCTCGGTCCCTCAG	0.647	15	15
C16orf45	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	15609218	15609218	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GGAGATTGAGCTGGAGATGGC	0.532	24	38
OR3A2	4995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	3181586	3181586	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGTGCCTGCCATGATGAAACC	0.547	40	63
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10267760	10267760	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TCGAATGGACGATTTTGAGCC	0.463	9	8
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	34298551	34298551	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CGGCCTTTTGACTGGCCATGT	0.502	79	112
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	7812221	7812221	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TCGAGTCTGTCGGAATCCAAG	0.572	259	670
ZNF763	284390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	12089769	12089769	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TCAATGTAAGGAATGTAGAAA	0.413	61	128
C19orf43	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	12841862	12841862	+	Silent	SNP	G	G	A	rs116718949	byFrequency	TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGGCCCACGCGTCACCTTTAC	0.557	45	99
TECR	9524	hgsc.bcm.edu;ucsc.edu	37	19	14674491	14674491	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TACCCCGCCCGCCAGTCCCTC	0.706	52	102
SLC1A6	6511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	15063753	15063753	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AACCAGTCCACGGCAATGATG	0.582	78	140
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	38942436	38942436	+	Silent	SNP	C	C	T	rs144658230		TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	ACATGGACGACGCACTGTCGC	0.632	47	119
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	46313896	46313896	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCTTCAGTGCCGCCTCCACTC	0.627	125	331
LILRA4	23547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	54849686	54849686	+	Silent	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCAGCTCCAGGGGGTCGCTGG	0.617	33	85
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	118516183	118516183	+	Splice_Site	SNP	T	T	C			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AAGATTCTGCTTCTGTTAGAG	0.378	50	55
RUSC1	23623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	155296536	155296536	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CTGGGCCCACCTCAGGCCCCT	0.657	80	114
SUCO	51430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	172579290	172579290	+	Missense_Mutation	SNP	T	T	G			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	ATAAAAACTCTAATACAGACT	0.418	20	32
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	233150466	233150466	+	Silent	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AGGGTGCACAGGGCGAAGGAC	0.542	37	77
OR2T34	127068	hgsc.bcm.edu;broad.mit.edu	37	1	248737288	248737288	+	Silent	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AGGAAGCACCGAAGAGCAGCA	0.557	43	59
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu	37	21	19716359	19716359	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGGTCCAGTTGGGGTAGAAAT	0.398	76	75
SLC5A4	6527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	32643471	32643471	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCCACCAAACCGCTTCTTGAG	0.488	23	39
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	38329071	38329071	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCTGGAGCAGCGCCAGGCTGA	0.612	41	76
TPO	7173	hgsc.bcm.edu;ucsc.edu	37	2	1457595	1457595	+	Splice_Site	SNP	G	G	A	rs3732349	by1000genomes	TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CACTGCCCCCGGTGGGTACTC	0.592	33	28
VRK2	7444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	58358955	58358955	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TTGTCCAGACGAAGTGACGTT	0.478	38	46
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	109400287	109400287	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GTGAAAAAGATTGAATCATTT	0.328	29	41
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	116525951	116525951	+	Missense_Mutation	SNP	T	T	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	ACGTGGAGAATTTCACCACGT	0.463	26	37
CERKL	375298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	182468728	182468728	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AACAGAACAACGCCGTTTCAG	0.313	9	19
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	219893020	219893020	+	Missense_Mutation	SNP	C	C	T	rs147414922		TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CGTCAGGCCCCGGGCCAGGTG	0.617	65	81
ASIC4	55515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	220379714	220379714	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGGCCTGGCCCGGGGCTACCT	0.701	23	30
SP100	6672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	231331885	231331885	+	Missense_Mutation	SNP	G	G	A	rs144727058		TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GGAGGCGCCCGCAGAAGCCTC	0.527	97	122
UGT1A7	54577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	234590757	234590757	+	Silent	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGGTCGTAGTCATGCCAGAGG	0.547	76	87
LRRIQ4	344657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	169540471	169540471	+	Silent	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AGAGCTTCGCCGAGCTCAGGA	0.602	21	36
FAM43A	131583	hgsc.bcm.edu;broad.mit.edu	37	3	194408803	194408803	+	Silent	SNP	T	T	C			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	ACGGCGCCAGTGCAGACGAGC	0.751	7	7
ZNF732	654254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	265912	265912	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TTTCTCTCCAGTATGAACTTT	0.368	6	18
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	82816827	82816827	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AGAGATTCTACAACTGAAGAA	0.408	67	65
FGD2	221472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	36979617	36979617	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GCTGCAGCGGCGCCTGGACGA	0.617	28	35
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	70972973	70972973	+	Missense_Mutation	SNP	C	C	T	rs148011193		TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCAACTTCTCCGAGTTCTCCC	0.323	7	17
SMAP1	60682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	71501425	71501425	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TCAGCCTTTGGTATCCTCTCC	0.393	55	70
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	138575103	138575103	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CTGCACAGGCGCTTCACGGAC	0.612	6	10
HOXA6	3203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	27187208	27187208	+	Nonsense_Mutation	SNP	G	G	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GAAACAAGGTGAGGTGTACGT	0.612	37	106
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	55233043	55233043	+	Missense_Mutation	SNP	G	G	T	rs139236063		TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGCCCGGCAGGAGTCATGGGA	0.567	5339	231
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	82582077	82582077	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGGTACTGTACGCAAATCAAT	0.353	9	21
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	97874267	97874267	+	Missense_Mutation	SNP	G	G	C			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCAGTGCGGCGAGGGCAGTGC	0.617	10	51
GAL3ST4	79690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99758141	99758141	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AGCCATGCCAGACCCCACTGG	0.527	67	177
SOX17	64321	hgsc.bcm.edu;broad.mit.edu	37	8	55370802	55370802	+	Nonsense_Mutation	SNP	C	C	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGGGCCGAGTCGCTGAGCCCC	0.741	9	14
SOX17	64321	hgsc.bcm.edu;broad.mit.edu	37	8	55370804	55370804	+	Silent	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GGCCGAGTCGCTGAGCCCCAT	0.746	9	17
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	55538939	55538939	+	Missense_Mutation	SNP	T	T	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	ACCCAAAGATTTTTATGCACC	0.323	14	22
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144995970	144995970	+	Silent	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGTGGCCCTGCGCCAACCGCT	0.682	46	40
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	134353210	134353210	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCTGGAGCGGGCAGCCCATGC	0.607	19	11
TEX13A	56157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	104464686	104464686	+	Silent	SNP	G	G	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GGCTGGTCTGGGCCATTCTTA	0.592	21	0
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	153693430	153693430	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TCTTACCTTGCGGGCTAAGAA	0.647	28	0
COL5A1	1289	broad.mit.edu;ucsc.edu	37	9	137701113	137701113	+	Missense_Mutation	SNP	C	C	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CCCTGTGGGTCCCCCTGGAGA	0.632	4	8
COL22A1	169044	broad.mit.edu;ucsc.edu	37	8	139890331	139890331	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GTAGGCGAGACGCCGGGCAGC	0.721	6	6
GRM4	2914	broad.mit.edu;ucsc.edu	37	6	34004320	34004320	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GGTTGGCAGGGCAGGCTGCAG	0.632	36	41
C9	735	broad.mit.edu;ucsc.edu	37	5	39364519	39364519	+	Silent	SNP	T	T	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGAGGATGCTTATTTCTAAAA	0.512	7	18
OR2T3	343173	broad.mit.edu;ucsc.edu	37	1	248637422	248637422	+	Silent	SNP	C	C	T			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TGCTGCTCTTCGGTGCTTCCT	0.552	41	318
GPR98	84059	broad.mit.edu;ucsc.edu	37	5	89933730	89933730	+	Silent	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	ATGACATACCGGAAATGAATG	0.353	23	35
FBN2	2201	broad.mit.edu;ucsc.edu	37	5	127800539	127800539	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CAGAGTCTTCGTGCAGACAAT	0.577	39	60
CSNK1A1P1	161635	broad.mit.edu;ucsc.edu	37	15	37109983	37109983	+	RNA	SNP	G	G	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	CAATTCTACTGATCATCTGGT	0.383	10	20
RELN	5649	broad.mit.edu;ucsc.edu	37	7	103163890	103163890	+	Missense_Mutation	SNP	C	C	T	rs150236371	byFrequency	TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	TCTATGCAGCCATCCCCGATA	0.473	63	154
SUSD3	203328	broad.mit.edu;hgsc.bcm.edu	37	9	95838087	95838087	+	Frame_Shift_Del	DEL	T	T	-			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AAGCTGCGGCTACCCCCGCAA	0.677	23	53
KLHDC1	122773	broad.mit.edu;hgsc.bcm.edu	37	14	50206884	50206885	+	Frame_Shift_Ins	INS	-	-	A			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	AAAGATGACTTACTTGCCTTGG	0.332	18	23
SDK2	54549	broad.mit.edu;hgsc.bcm.edu	37	17	71344740	71344741	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-FG-A4MU-01B-11D-A289-08	TCGA-FG-A4MU-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	17bade4e-8b65-42e3-932f-d50716d0d833	fa64db97-5a09-43a5-8ef3-4671ca970e4b	GCCCTCACCTGAGAGTCGGAGA	0.594	12	22
