Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	88418318	88418318	+	Missense_Mutation	SNP	C	C	T	rs143641898	byFrequency	TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CGCCCTGGACCGCTACCTGGT	0.617	20	22
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	89624256	89624256	+	Missense_Mutation	SNP	C	C	G			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	AGATCGTTAGCAGAAACAAAA	0.478	27	25
SYT9	143425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	7324401	7324401	+	Missense_Mutation	SNP	G	G	C			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TGGTAGCAAAGACAACAACCA	0.562	34	89
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55110940	55110940	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GTGATAAAATCGCTATTTCCT	0.438	48	81
SLC22A25	387601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	62997040	62997040	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TATACTATGACGTTGAACATT	0.458	13	33
ADAMTS15	170689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	130343421	130343421	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CCGTGCTCCGCGAGCTGCGGC	0.726	18	39
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	112647838	112647838	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CGGTGGCCACGGCAGCAATCC	0.537	8	21
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	70515655	70515655	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GTGGGGGGCACACAGGCAAAC	0.592	10	29
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	77844618	77844618	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GAGACTCAACCAGAGGTTCCA	0.512	25	47
GOLGA5	9950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	93276685	93276685	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GCGGATGCCACTCTGAAGAGA	0.433	11	19
MYO5C	55930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	52534268	52534268	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CTCCTTGCCAGGAATCCTCGG	0.537	62	48
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	63032969	63032969	+	Splice_Site	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CAGCTGCAAGGTAGGAGTGGG	0.493	11	11
NTN3	4917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	2522817	2522817	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CCGCCGGCCGCCACTGCCACT	0.701	17	26
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	10574741	10574741	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CACAGAAAGTCCAGTATCCCC	0.388	22	55
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	62055202	62055202	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ATTAAAACTTGAGACTGATTC	0.428	8	24
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	62055208	62055208	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ACTTGAGACTGATTCATCGGA	0.443	9	21
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	81925184	81925184	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GGATCTCCTCGTCACATAACA	0.552	5	9
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	81953229	81953229	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ATGAGACTGCGCTACCCCGTG	0.537	26	44
FOXN1	8456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	26864332	26864332	+	Missense_Mutation	SNP	G	G	C			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CGGGGCACTGGGTGACCTGCA	0.687	19	39
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	60483969	60483969	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GCTGCCTTTGCTAATGCTGCC	0.428	22	45
DDX42	11325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	61864442	61864442	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CTGGCACTAAGCGAGGATTTG	0.448	49	101
ARSG	22901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	66391215	66391215	+	Splice_Site	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TTTCCGCAGCGTGCTGGACAT	0.597	16	29
TIMP2	7077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	76851869	76851869	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CGTTGATGTTCTTCTCTGTGA	0.642	32	56
PIEZO2	63895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	10671755	10671755	+	Silent	SNP	T	T	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CAAGGACAACTGAAGCATATA	0.323	15	25
AQP4	361	hgsc.bcm.edu;ucsc.edu	37	18	24445621	24445621	+	Splice_Site	SNP	C	C	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GAAGGACTTACCCCCACCGCC	0.517	23	105
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	34156464	34156464	+	Missense_Mutation	SNP	C	C	T	rs143579901	byFrequency	TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	AGTAATAAACCGCAATGAAAC	0.373	18	31
CTIF	9811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	46284511	46284511	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GGCGCACACCGCAATGCCAAA	0.642	27	24
SEC11C	90701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	56816768	56816768	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TTTTAAACTTCGCCATGATCG	0.493	35	71
SERPINB7	8710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	61449715	61449715	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GAGCCTCTTCGCTGCCCTGGC	0.483	17	35
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	74667996	74667996	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	AAGGAGGGCCGGGCGCACCAG	0.637	7	12
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	1053821	1053821	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TGTGCTGCGGACACAGATATG	0.637	20	96
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	1785489	1785489	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TGGACAGCAGGCAAGACAGGG	0.647	7	33
KANK3	256949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	8389602	8389602	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ACACATCAGCGCTGTGGCCCC	0.637	20	57
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	36046393	36046393	+	Silent	SNP	C	C	T	rs143513836	byFrequency	TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GGCTGGTGCGCGCAAACACCA	0.667	10	32
ZNF540	163255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	38103617	38103617	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TTTCGAGTTCGTTCTCAAATT	0.398	17	50
SNRPA	6626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	41268829	41268829	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TGACTCAGGCGCCCCGCATTA	0.657	16	31
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	44681060	44681060	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TCTTCAAATCCATCAGAAGGC	0.443	31	108
ZBTB40	9923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	22852748	22852748	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TCACTTTGGAGGAGACCCAGC	0.592	15	76
LCE2A	353139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	152671572	152671572	+	Silent	SNP	C	C	T	rs61812675		TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CTGGGGGTGGCGGCTGCTGCC	0.687	52	83
PEAR1	375033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	156884576	156884576	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TCCACTTCGACGCCAGGACCG	0.612	13	31
OBSCN	84033	hgsc.bcm.edu;ucsc.edu	37	1	228538635	228538635	+	Missense_Mutation	SNP	C	C	T	rs140996408	by1000genomes	TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GCCCCGTACCCGCAGATCAGG	0.682	10	42
ISM1	140862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	13280078	13280078	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GACTACATCAAGCAGTTCCAA	0.567	35	60
RIN2	54453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	19945627	19945627	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GAATCAGTTTCGCAGATTTAT	0.478	23	72
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	24451502	24451502	+	Missense_Mutation	SNP	A	A	G			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GATCCAGCCAAGCACTGTCAG	0.577	28	75
COLEC11	78989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	3691388	3691388	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CTACGCGGACGCCCAGCTGTC	0.662	20	60
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	32461395	32461395	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TGACCAAATTGTGAAGATTCT	0.303	6	12
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu	37	3	164907844	164907844	+	Missense_Mutation	SNP	T	T	C			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TCACAGGTAATGTCTCCCACC	0.488	6	97
WFS1	7466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	6304060	6304060	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	AGGCCATCAGCTGCCTCAACT	0.652	18	35
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	111398156	111398156	+	Missense_Mutation	SNP	C	C	A	rs112068198	byFrequency	TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CGCCGGCTGGCTGAACGGCTC	0.502	22	57
HHIP	64399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	145579961	145579961	+	Silent	SNP	G	G	A	rs146735069		TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	AAACAACTGCGGATGAGTTTT	0.358	10	38
ACSL1	2180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	185678385	185678385	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ATTGTCGATAGAAAATAATTC	0.453	18	28
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	41149449	41149449	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ACTGGCGGCCGTCTTGGCAGG	0.418	38	70
HAPLN1	1404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	82937339	82937339	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TGAAGCAGTAGACACCATACA	0.453	16	113
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	153078545	153078545	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TACTCCTACCGTCTGGAGATT	0.542	14	31
HLA-DPB1	3115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	33052887	33052887	+	Silent	SNP	C	C	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CCAACCTGATCCGTAATGGAG	0.552	24	71
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	155450785	155450785	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TGCTACGGGAGGAATGAGAGC	0.567	14	28
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	2983911	2983911	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TGTGCGTAGCGCATGGCTAAG	0.567	20	94
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	55223567	55223567	+	Missense_Mutation	SNP	G	G	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CCGAGCCTGTGGGGCCGACAG	0.607	3346	371
ZNF713	349075	hgsc.bcm.edu;ucsc.edu	37	7	56007266	56007266	+	Missense_Mutation	SNP	A	A	C			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CAGAGGATACATCTCATTCAA	0.433	7	41
CDK14	5218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	90377064	90377064	+	Silent	SNP	T	T	C			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	AAGGATCTTATGCTACAGTAT	0.338	21	69
PTCD1	26024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99027240	99027240	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ATCCTAAGGTCTGCGCACTTG	0.607	23	67
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	117424371	117424371	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TAATTAATGTCCAGTCCTTCT	0.478	36	128
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	142627452	142627452	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ACCTCTTTGTCGAACGTCACA	0.512	29	65
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	24207446	24207446	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ATGGTAATCCGGCACCAGAGC	0.478	26	53
MAK16	84549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	33356082	33356082	+	Silent	SNP	C	C	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GCAGAGAAAACGAGCCTATGT	0.483	18	60
ASPN	54829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	95228797	95228797	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ACTTCTTTGTGGTTAGAAAGG	0.373	39	61
ENG	2022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	130587089	130587089	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CGCAGCTGGAGGCATGAAGTG	0.617	11	9
ASMT	438	hgsc.bcm.edu;ucsc.edu	37	X	1748790	1748790	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CGTGCTGACCGCCTTTGACCT	0.557	44	81
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	118284501	118284501	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GGAGAGAAGCGTGAAAGGCAG	0.642	50	18
MAGEA11	4110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	148798319	148798319	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CAAGGGCCCACGCTGAGACCA	0.527	74	31
TBL1Y	90665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	Y	6911098	6911098	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ACTAGTGCCACCGTCTGCCCT	0.532	15	10
PTCH2	8643	broad.mit.edu;ucsc.edu	37	1	45294292	45294292	+	Silent	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GCAGACACTCGCCCATGCGCT	0.632	5	9
PMFBP1	83449	broad.mit.edu;ucsc.edu	37	16	72166638	72166638	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GCACCTGCAGGGGCCTCACCA	0.632	12	48
ZNF492	57615	broad.mit.edu;ucsc.edu	37	19	22847685	22847685	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TTTAACCTATCGTCACAACTT	0.383	8	49
RBMS3	27303	broad.mit.edu;ucsc.edu	37	3	29977603	29977603	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CAACCATGGACCATCCCATGT	0.438	5	16
FSIP2	401024	broad.mit.edu;ucsc.edu	37	2	186670853	186670853	+	Missense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TCTGAAATAGGCTATAAAAAG	0.328	10	27
NFKBIA	4792	broad.mit.edu;ucsc.edu	37	14	35872895	35872895	+	Splice_Site	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	AAGCGGCGCACCTGCTGCAGG	0.567	4	8
ANKRD20A11P	391267	broad.mit.edu;ucsc.edu	37	21	15352074	15352074	+	RNA	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CGCCAGACAGCGCTCCATCTC	0.662	9	20
FLNB	2317	broad.mit.edu;ucsc.edu	37	3	58080624	58080624	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ACACCATCAGCGCCGGGCAAG	0.542	41	108
SERPINA3	12	broad.mit.edu;ucsc.edu	37	14	95090030	95090030	+	Missense_Mutation	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	ACCCTCCTTTCTGCATTAGTG	0.498	31	54
OR7C2	26658	broad.mit.edu;ucsc.edu	37	19	15052351	15052351	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TCCTGGGATTCGCAGAGGACT	0.498	27	82
STOML1	9399	broad.mit.edu;ucsc.edu	37	15	74281475	74281475	+	Nonsense_Mutation	SNP	G	G	A			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TTGAAGGCTCGTGTCCTCAGA	0.602	3	23
HSD17B2	3294	broad.mit.edu;ucsc.edu	37	16	82104638	82104638	+	Silent	SNP	C	C	T			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	AATGCATGGCCGTGAACTTCT	0.488	16	41
ZC3H11A	9877	broad.mit.edu;hgsc.bcm.edu	37	1	203818970	203818971	+	Frame_Shift_Ins	INS	-	-	G			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GGGGAGATGTAGCCTCTTGCAA	0.5	16	43
SAP130	79595	broad.mit.edu;hgsc.bcm.edu	37	2	128707774	128707776	+	In_Frame_Del	DEL	CAC	CAC	-			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TCTCAGCCTTCACCAGAAGACTC	0.468	34	71
AADACL2	344752	broad.mit.edu;hgsc.bcm.edu	37	3	151475059	151475062	+	Frame_Shift_Del	DEL	TATG	TATG	-			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	TAGAAAAGACTATGTATATACTGA	0.397	16	38
PRUNE2	158471	broad.mit.edu;hgsc.bcm.edu	37	9	79318755	79318758	+	Frame_Shift_Del	DEL	CTAA	CTAA	-			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	GGGAAGCTTGCTAACTGAGTTCCC	0.417	14	44
PRX	57716	broad.mit.edu;hgsc.bcm.edu	37	19	40900042	40900043	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-FG-A4MW-01A-11D-A26M-08	TCGA-FG-A4MW-10A-01D-A26K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	599c96ab-fdfb-4322-aea4-4915a5d98975	bf3e7591-0488-4648-b6ce-4630ce883551	CTTGGGTGACTTCTCTCTGACG	0.688	39	130
