Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR5A1	219982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	59211138	59211138	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	GCCAGCTCCATATTTAGGCTT	0.542	49	348
CHRM1	1128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	62677198	62677198	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	TATCAGCATTGGCGGGAGGGA	0.682	19	109
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	4737521	4737521	+	Missense_Mutation	SNP	C	C	T	rs140759485		TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CATGCAGAGACGGTCTCATTC	0.478	25	128
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	24035874	24035874	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CTGGAGGAGGCGATCAGTTTC	0.527	20	121
SLC43A2	124935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	1516558	1516558	+	Silent	SNP	G	G	A			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	AGATGAGCACGGAGAGAGCTG	0.552	5	26
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	21364088	21364088	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	TGATACCTGCCGCTCTGGTTT	0.498	26	187
OR2Z1	284383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	8841797	8841797	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CCTGTACTTATGAGACGCCAG	0.547	26	109
RYR1	6261	hgsc.bcm.edu;broad.mit.edu	37	19	39055678	39055678	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CTCTTCGTGAGTTTCTGCGAG	0.657	4	1
PADI2	11240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	17413096	17413096	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	AGGCCTTCCACGAAGAACAGC	0.617	13	70
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	78435640	78435640	+	Nonsense_Mutation	SNP	A	A	C			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	TTTGTCCCCCATAACCATAGT	0.303	15	41
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	78435643	78435643	+	Silent	SNP	A	A	C			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	GTCCCCCATAACCATAGTCAT	0.308	15	42
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	186863284	186863284	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	GACAGCAACATTTACTGTATC	0.333	26	57
EPHX1	2052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	226032903	226032903	+	Missense_Mutation	SNP	C	C	T	rs45495897	byFrequency	TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CTATTGCACACGCCTGAAAAG	0.567	11	88
TRIM58	25893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248028032	248028032	+	Missense_Mutation	SNP	G	G	A	rs147592698	by1000genomes	TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CAGAGGCAGCGCTTCAGATTG	0.592	7	33
TMEM189	387521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	48700714	48700714	+	Silent	SNP	T	T	C			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	TTGTTACAAATCTTACAAAGG	0.358	23	120
CTSZ	1522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	57576621	57576621	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	ACAGGAGCCAGCGTTACCGCA	0.602	11	61
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	ATAAGCATGACGACCTATGAT	0.393	10	72
SLCO4C1	353189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	101592891	101592891	+	Missense_Mutation	SNP	G	G	A	rs145600550		TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	AAAACTCAGCGTAAGTGCAAC	0.353	6	49
GPR110	266977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	46977421	46977421	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CATTTTACAACGGGGAAGATT	0.428	9	87
UBR5	51366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	103297901	103297901	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	TAGGTAACTGCTGGCGTTGCT	0.463	20	82
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	120628508	120628508	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	AACTTACCGGTTGACCTCCCC	0.378	11	77
FAM154A	158297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	18928829	18928829	+	Missense_Mutation	SNP	C	C	T	rs117915008	by1000genomes	TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CGCTTCTCCACGGGGTGGGCC	0.507	16	81
ANKRD30A	91074	broad.mit.edu;ucsc.edu	37	10	37442521	37442521	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	GACTGTTTCACAGAAGGATGT	0.274	17	106
SLC30A8	169026	broad.mit.edu;ucsc.edu	37	8	118170064	118170064	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	TTCCAGCTGCGCAGTGGCGGC	0.527	18	92
PCSK2	5126	broad.mit.edu;ucsc.edu	37	20	17339014	17339014	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CCGAAAAAAGCGAGGTTACAG	0.398	7	57
DOCK5	80005	broad.mit.edu;ucsc.edu	37	8	25181376	25181376	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	AGAGATAAATCGGAGCGAGCA	0.532	5	12
REM2	161253	broad.mit.edu;ucsc.edu	37	14	23354154	23354154	+	Silent	SNP	G	G	A			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	AGAGCGGCGTGGGCAAGAGCA	0.607	15	54
AGO1	26523	broad.mit.edu;hgsc.bcm.edu	37	1	36379854	36379855	+	Frame_Shift_Ins	INS	-	-	A			TCGA-HT-7467-01A-11D-2024-08	TCGA-HT-7467-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	38f4e4b7-a4cc-4d87-bfd0-c4356d92086e	144f3ce7-40ba-4773-a950-e8d7ac5a0e49	CAGGGGATGGGAAAAAACCTTC	0.48	19	65
