Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	16990512	16990512	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GTGGAAACCCCCAGCACTGAT	0.512	15	62
OR52E8	390079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	5878264	5878264	+	Nonsense_Mutation	SNP	A	A	C			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GGATCCTGACATAGGAGAGAA	0.463	12	28
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	46893136	46893136	+	Silent	SNP	G	G	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GTTTCCCATTGAGGTCAGCAC	0.557	18	19
HTR3B	9177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	113803068	113803068	+	Silent	SNP	C	C	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	CATCTGGGACCATTGAGAACT	0.433	19	192
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	130750571	130750571	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GCCAGTTTCTGCTCTTGGGTC	0.517	52	263
HMGA2	8091	hgsc.bcm.edu;broad.mit.edu	37	12	66221789	66221789	+	Silent	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	AGGAACCAACCGGTGAGCCCT	0.448	5	71
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	70954486	70954486	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	ATTGCTGAGATCTCCACTGTG	0.512	9	65
SHF	90525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	45470424	45470424	+	Silent	SNP	T	T	C			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GGACCTTCTCTGGGGCTCCTG	0.567	16	41
RHBDF1	64285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	111434	111434	+	Silent	SNP	G	G	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TGACGTTCTCGTAGACCCCGC	0.716	7	56
PRSS22	64063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	2906139	2906139	+	Silent	SNP	G	G	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GAGAACCTGCGCAGTGGTGGG	0.617	17	99
ERCC4	2072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	14031642	14031642	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TCTTATATACGGAGGTTCAAC	0.363	22	55
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	89348104	89348104	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TTGGGGTCTCCGGACCGGTGC	0.607	23	110
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GCACAAACACGCACCTCAAAG	0.542	28	13
MYO19	80179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	34866651	34866651	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GCAGGGCTTCCGGAACACCTG	0.627	7	13
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	40357728	40357728	+	Silent	SNP	G	G	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	AACAGCGCTCGCTGCAGTCTG	0.587	12	40
PPP1R12C	54776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55605714	55605714	+	Splice_Site	SNP	T	T	G			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	ACCCCACACCTGTGTGGACCT	0.657	27	135
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	100346642	100346642	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	CATAGATCAGCGTATGATGCT	0.353	17	69
CEPT1	10390	hgsc.bcm.edu;broad.mit.edu	37	1	111726868	111726868	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	AATCAGATTGCGTCTCACCTG	0.398	6	121
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	152080904	152080904	+	Missense_Mutation	SNP	A	A	T	rs71585886		TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TCCTCCATGAATTTTCTCTCT	0.582	35	73
CFH	3075	hgsc.bcm.edu;broad.mit.edu	37	1	196642210	196642210	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	AAATGCCGCCCTGGATATAGA	0.403	9	117
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	237872820	237872820	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	AGCAGAGGAGCTCTTCCGCAT	0.418	10	12
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	71590305	71590305	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GAATCCTGAGATCCTCCCATC	0.264	26	51
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	T	rs121913499		TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TAAGCATGACGACCTATGATG	0.398	34	107
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	234905020	234905020	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TGGAAGTTCCAGAGGTACTTC	0.537	9	82
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu	37	3	19575424	19575424	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	ATCAGAGGAGGGCAGCTTCAG	0.488	5	52
ABI3BP	25890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	100489774	100489774	+	Silent	SNP	T	T	C			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TGTCAGGCTTTTGGATGTATC	0.468	21	158
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	154146852	154146852	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	CTGGAGCAGTCCACCAGGCAG	0.657	7	47
STATH	6779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	70866654	70866654	+	Silent	SNP	A	A	G			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	AATACCAACAATATACCTTTT	0.373	46	167
CAPSL	133690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	35910530	35910530	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TCAAACCTCCGGAAAAGTTCT	0.358	18	89
SPOCK1	6695	hgsc.bcm.edu;ucsc.edu	37	5	136324179	136324179	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GGAGTCACACGAGTTGAAAAG	0.498	46	139
RNF145	153830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	158621725	158621725	+	Splice_Site	SNP	T	T	C			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TATTCTTACCTGGAAATTTGA	0.363	65	155
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	70877920	70877920	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TCCTAAGGGTATTCCATTTAA	0.279	15	101
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	106555167	106555167	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	AATTCTGGCCGTGGTCAGAAA	0.478	28	63
MICAL1	64780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	109770958	109770958	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TCTGGGGATGTCTGTGACAGA	0.607	17	159
FOXB2	442425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	79635448	79635448	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	CCCTTGGCGTCCGTCATGCAC	0.662	17	61
AKAP4	8852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	49958837	49958837	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	CATTTCTAGACGTAGGTTTTG	0.443	49	62
DOPEY1	23033	broad.mit.edu;ucsc.edu	37	6	83839856	83839856	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TGAGCATGTGCAGCCTCCACA	0.418	23	56
NOTCH1	4851	broad.mit.edu;ucsc.edu	37	9	139411837	139411837	+	Splice_Site	SNP	C	C	A			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	ACCCTCGTAGCCTGTGGGGTG	0.647	4	9
SRPK2	6733	broad.mit.edu;ucsc.edu	37	7	104782648	104782648	+	Silent	SNP	T	T	C	rs56003957	byFrequency	TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GTCGTCCATTTGGCAATTCAC	0.443	23	131
TRAPPC11	60684	broad.mit.edu;ucsc.edu	37	4	184628079	184628079	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	CTTCATGTTCTCAGGTCTCAA	0.418	8	72
LRRTM4	80059	broad.mit.edu;ucsc.edu	37	2	76975874	76975874	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	CTGGCGATGGTGGCGATGAAG	0.617	49	169
ZW10	9183	broad.mit.edu;hgsc.bcm.edu	37	11	113614641	113614641	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	GTCCAATGTATTTTCAGGCTC	0.418	64	153
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76874329	76874330	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HT-7470-01A-12D-2086-08	TCGA-HT-7470-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96f42efa-3605-4aef-8b3a-425bdfe1b51a	0d30db78-7ca2-423e-b60a-099aa73b2411	TTTCATCACTCTGACATCTACC	0.322	82	52
