Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	26500833	26500833	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	CAACCCCTACGACTTCAGGAG	0.652	6	15
CHST15	51363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	125780796	125780796	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	TGAGGGTGTTGTTGTAGACGC	0.542	10	13
CHRNA3	1136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	78894483	78894483	+	Silent	SNP	C	C	T			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	GGTAATCAAACGGGAAGTAGG	0.483	34	177
TMC8	147138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	76130033	76130033	+	Silent	SNP	G	G	A			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	GCATCCGGGTGCAGGAAGCAG	0.577	36	44
GATA6	2627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	19751533	19751533	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	GCACCCGAGCAGCCGGAGGAG	0.716	6	40
COLGALT1	79709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	17690296	17690296	+	Silent	SNP	G	G	A			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	CTCAGGTGGTGGACCGGGGGC	0.562	29	45
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	53959188	53959188	+	RNA	SNP	G	G	A	rs144532705		TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	AAAGCTTTCCGTTTCAAATCA	0.423	36	3
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	78430773	78430773	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	TTAATAGTTTCTCCCCCTTTT	0.393	128	39
KIAA1324	57535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	109707134	109707134	+	Silent	SNP	C	C	T	rs144842352		TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	TCTCCTGCAACGCCGGGGAGT	0.592	103	21
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	167870912	167870912	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	ATCTTGACTCGGATGTCTAGG	0.463	87	102
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu	37	1	181765891	181765891	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	GATGTCTCCCGCTGCAATTCA	0.602	3	18
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	34924118	34924118	+	Missense_Mutation	SNP	A	A	G	rs142324795		TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	AACTAGCTCAATGGATTCCCA	0.493	102	140
LRRC3	81543	hgsc.bcm.edu;broad.mit.edu	37	21	45876870	45876870	+	Silent	SNP	C	C	T	rs138458454		TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	GGCCGGGGGCCTGCGGCTGCT	0.672	4	59
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	ATAAGCATGACGACCTATGAT	0.393	55	70
STAB1	23166	hgsc.bcm.edu;broad.mit.edu	37	3	52552602	52552602	+	Silent	SNP	C	C	T			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	TCGTGCCGCACGCAGATCTAA	0.627	5	8
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	1409836	1409836	+	Splice_Site	SNP	G	G	A	rs2270912	byFrequency	TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	TGGTACGTACGTTGGTGACGC	0.617	45	51
TTYH3	80727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	2698612	2698612	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	CGCTGTGAGAACACCCCACTC	0.642	124	165
TMEM248	55069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	66416082	66416082	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	GGAAAAGTCTATCATGCTTTA	0.428	38	65
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	3238337	3238337	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	GAGGGTGATCCCGTGGTCTGC	0.493	20	27
CCNT1	904	broad.mit.edu;ucsc.edu	37	12	49087565	49087565	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	TTTATCTCCTCTGGTTTTGAA	0.453	36	66
RBM4	5936	broad.mit.edu;hgsc.bcm.edu	37	11	66411034	66411035	+	Frame_Shift_Ins	INS	-	-	CGATAGAT			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	CAAAGAGTGTCCGATAGATCGT	0.579	14	80
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42794411	42794411	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HT-7471-01A-11D-2253-08	TCGA-HT-7471-10B-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	06425414-a57c-40df-905e-290fa2086153	d0b349eb-d50b-43ec-903d-e8494d8705ca	TGTTTTCACCTGTGATCCGTT	0.617	82	26
