Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR52B6	340980	hgsc.bcm.edu;broad.mit.edu	37	11	5602531	5602531	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	TTTGACCGCTATGTGGCCATC	0.512	52	82
OR8I2	120586	hgsc.bcm.edu;broad.mit.edu	37	11	55861581	55861581	+	Silent	SNP	G	G	A			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	ACACATCATCGCTGACCCAGG	0.468	7	94
MYLK3	91807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	46766546	46766546	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	AGCATCTCCCCAGGAGTATCC	0.607	8	12
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577142	7577142	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	CTGTTCCGTCCCAGTAGATTA	0.517	17	4
EIF4A3	9775	hgsc.bcm.edu;broad.mit.edu	37	17	78117984	78117984	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	GCGATGACATCTCTCCCTTTG	0.473	5	70
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	150531779	150531779	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	TCCGAATGTGGCTCTGGCACA	0.592	9	66
RPS6KC1	26750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	213414640	213414640	+	Silent	SNP	T	T	C			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	ACAGTAAGGATAGCGCAAGTG	0.408	19	63
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	46267764	46267764	+	Nonsense_Mutation	SNP	C	C	G			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	TTGAAAAGTTCACAGTCTGTG	0.388	47	74
POLR3H	171568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	41936719	41936719	+	Silent	SNP	G	G	A			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	TGTGTGATGCGCCATCCCCAG	0.502	31	73
WNT7A	7476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	13860812	13860812	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	TCCTTGAGCACGTAGCCCAGC	0.587	13	63
OSBPL10	114884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	31725264	31725264	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	ACTTGCTCAGCCACAAACCTT	0.527	10	99
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	108216948	108216948	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	AAAATACTGGATAATATGTTT	0.403	67	113
MED28	80306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	17616285	17616285	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	AACATGGCGGCTCCACTAGGG	0.652	16	26
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	6145947	6145947	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	TTCCGATGCCCAGAGACCCAG	0.547	19	85
VDAC3	7419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	42257212	42257212	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	ATATTTGTACCGAACACAGGG	0.338	15	32
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	128124938	128124938	+	Silent	SNP	T	T	C			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	GCTTTTATGCTAGCTGTCTGT	0.418	55	100
ANGPTL2	23452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	129854133	129854133	+	Silent	SNP	C	C	G			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	CCATGGTCACCAGGAGTTTGT	0.552	97	210
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	39934221	39934221	+	Silent	SNP	C	C	G			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	CGGGTGTATTCGGTTTGAACT	0.507	15	11
IDH1	3417	broad.mit.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	ATAAGCATGACGACCTATGAT	0.393	27	45
MKLN1	4289	broad.mit.edu;hgsc.bcm.edu	37	7	131113796	131113799	+	Frame_Shift_Del	DEL	TGTT	TGTT	-			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	TCATAGAGACTGTTTATTTGTTTG	0.402	20	49
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76937477	76937480	+	Frame_Shift_Del	DEL	TCTC	TCTC	-			TCGA-HT-7472-01A-11D-2024-08	TCGA-HT-7472-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	829d4bf0-c9c6-4cec-a549-6c8731d3e5c0	e9d41667-1202-4755-a988-b26f4a334717	CACCTTTTCTTCTCTCTACCATAT	0.377	114	74
