Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
KIAA1377	57562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	101857730	101857730	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	TGAAGAACAGAAGATCCTAGA	0.328	26	45
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	42356999	42356999	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	CCATGAGCCTGATCCTGGTTC	0.388	12	63
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	90631838	90631838	+	Missense_Mutation	SNP	C	C	T	rs121913503		TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	ATGGGCGTGCCTGCCAATGGT	0.632	28	43
UNC45A	55898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	91491977	91491977	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	CAAGATGGTGGAGCTGGCCAA	0.627	4	11
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	GCACAAACACGCACCTCAAAG	0.542	16	10
FLRT3	23767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	14307457	14307457	+	Silent	SNP	C	C	T			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	AATTCCGCACCAGGGACAGCT	0.453	18	49
TPTE	7179	hgsc.bcm.edu;broad.mit.edu	37	21	10973723	10973723	+	Splice_Site	SNP	C	C	G			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	CATAACTCACCTTTCATTCAT	0.383	15	95
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52848085	52848085	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	TGGTAAAACTGGCCTGAGATA	0.592	10	18
SPICE1	152185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	113172505	113172505	+	Silent	SNP	C	C	G			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	GCCCATCTCCCAGTACTGGGA	0.453	30	74
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	57193877	57193877	+	Silent	SNP	G	G	A			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	TTTCCACCCCGGATGCTGCCC	0.507	60	125
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	122853715	122853715	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	GGGGGTGATGTCCGGCGAGAA	0.617	22	35
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	126239920	126239920	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	ACTGTATTGGACACTCAAGAC	0.448	14	116
AP3B1	8546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	77473214	77473214	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	GCCAGCTTCAGATTTTGGTGA	0.338	28	57
DYNC1I1	1780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	95657551	95657551	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	GGGACTTACTCGGGCCAGATT	0.532	49	95
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	123594310	123594310	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	AACCATCACTATAAGAAACCC	0.388	37	81
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	113547910	113547910	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	TCTGAACCCCAAATTGCTCAG	0.483	66	122
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	99662028	99662028	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	GGTCTGCTCGTGGTTAAAGGA	0.582	42	31
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939347	76939348	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-HT-7476-01A-11D-2024-08	TCGA-HT-7476-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	c9627781-e55f-45ac-9c49-bdd3b0bcdc86	6dff219a-04da-4385-bcdb-17871c41e822	TATCTACCTGTTTTCTTGAAAG	0.356	103	67
