Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	CAGCGCCTCACAACCTCCGTC	0.662	32	28
KRT38	8687	hgsc.bcm.edu;broad.mit.edu	37	17	39596991	39596991	+	Silent	SNP	G	G	A			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	GGCGGCCCAGGGGAGTGGACC	0.637	6	82
TTYH2	94015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	72233513	72233513	+	Silent	SNP	C	C	T			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	CTGCCCGGGGCGATTACCTGC	0.597	19	63
OTOP2	92736	hgsc.bcm.edu;broad.mit.edu	37	17	72923807	72923807	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	ATCTGGATGGCGGCCGTGGTG	0.577	4	45
PLVAP	83483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	17487967	17487967	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	CATGAAGAGCACGAGCCCCAG	0.612	19	54
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	2415924	2415924	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	ACGCTGGGTTTTGAAGAGTTC	0.602	8	29
ZFP69	339559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	40961691	40961691	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	AGTCGACATCATGAAATACAC	0.368	24	81
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	158670418	158670418	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	AACTCCTGAATGGTGGTTCGA	0.433	15	73
ASPHD2	57168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	26829961	26829961	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	CAGAAGCTGTACCACAACCTG	0.652	12	40
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	1906994	1906994	+	Silent	SNP	C	C	T			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	GGTTGGAACGCGGCGTAGTTG	0.468	12	31
MOGS	7841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	74688527	74688527	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	TGGTACTGGCGCCATACATTG	0.622	27	79
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	131521009	131521009	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	GCCCTGGGGACGCCACTGTCC	0.652	21	52
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	TAAGCATGACGACCTATGATG	0.398	21	65
CASR	846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	122003874	122003874	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	GGACTTAGATCTGACCGTCCA	0.592	22	61
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	79428637	79428637	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	ATGGCATGAATCTTTCTCACT	0.488	5	34
PCDHGB3	56102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140750527	140750527	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	CTGGATGGCAGTAGGTACCCA	0.557	34	134
ZNF300	91975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	150275093	150275093	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	CCAGTATGAATCCTCTGATGT	0.438	22	60
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	34149060	34149060	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	ACCCGGGCCTCACAACGATCC	0.557	17	20
SNHG14	104472715	broad.mit.edu;ucsc.edu	37	15	25438440	25438440	+	RNA	SNP	A	A	G			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	TGCTGGATGCATGCGCCGGGA	0.537	50	182
BTN2A3P	54718	broad.mit.edu;ucsc.edu	37	6	26423175	26423175	+	RNA	SNP	G	G	A	rs151279164	byFrequency	TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	GGTCACTGTCGTGGGGCCCAC	0.537	16	42
OCA2	4948	broad.mit.edu;hgsc.bcm.edu	37	15	28171297	28171297	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	AGAGCGCTGCAAAAAACAGAA	0.363	19	63
ZNF320	162967	broad.mit.edu;hgsc.bcm.edu	37	19	53384195	53384195	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HT-7479-01A-11D-2024-08	TCGA-HT-7479-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d45da2a7-4b4f-4194-80c1-2b26ceb2f769	bc1d4a60-ad52-4534-9e2f-b5a5208c66a1	CGCTTTTGTACTAAAAACCTT	0.403	38	104
