Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CD163	9332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	7635248	7635248	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	CCTGCAAGCCGCTGTCTCTGT	0.428	55	124
KERA	11081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	91449544	91449544	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	GTTCTGTAGGTCAAGAAGGGT	0.413	49	160
FSCB	84075	hgsc.bcm.edu;broad.mit.edu	37	14	44975038	44975038	+	Silent	SNP	G	G	T			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	GAGGGAGACCGAATTTCACCA	0.532	12	144
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	70417415	70417415	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	ATGACAAGGATATTTCTTCTG	0.507	13	49
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu	37	19	55494669	55494669	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	CATTGGGGACGTACAGAAGCT	0.557	4	51
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	78420962	78420962	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	AGTACTCTTCCCAAGCCTTGG	0.318	11	24
HRNR	388697	hgsc.bcm.edu;broad.mit.edu	37	1	152191242	152191242	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	TCGTAGCTGGAGGAGTGACCT	0.542	96	319
FLRT3	23767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	14306271	14306271	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	CTGCTTTCACTGTGATTGTTT	0.413	18	141
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	51873020	51873020	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	AGCAAACATGCGGTAAAACTC	0.468	19	59
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	25470985	25470985	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	AGGCGTGGTAGCCACAGTGGG	0.647	24	55
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	ATAAGCATGACGACCTATGAT	0.393	16	77
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178917478	178917478	+	Splice_Site	SNP	G	G	A			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	TTTATTAAAGGTTTTGCTATC	0.338	14	82
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu	37	3	178952072	178952072	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	CATGAAACAAATGAATGATGC	0.368	7	101
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	197751579	197751579	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	TTCCGTTTGTCTAATTCAGAA	0.393	12	96
CPEB2	132864	hgsc.bcm.edu;broad.mit.edu	37	4	15060817	15060817	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	ATAGGTTCAAATACGTCCTTG	0.348	5	63
UGT2B28	54490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	70155435	70155435	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	CTCAATACTCGGCTGTATAAG	0.363	31	40
GK2	2712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	80328636	80328636	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	AATTAGGCCATAGATCTCAGA	0.423	37	100
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	37309323	37309323	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	TCTTTCTTTTTCAGTCTTATT	0.343	9	24
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	39513390	39513390	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	ATGAACTTTACGCATATCCGC	0.358	32	77
DLK2	65989	hgsc.bcm.edu;broad.mit.edu	37	6	43418774	43418774	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	TGGCATGGGCGGCTGGCACAG	0.622	5	71
FRK	2444	hgsc.bcm.edu;broad.mit.edu	37	6	116265543	116265543	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	AACCTGTGCCGCCATGTCTAC	0.418	4	67
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	161470895	161470895	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	ACCATTTGTAGACAAAGCACT	0.423	13	100
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu	37	8	37734856	37734856	+	Silent	SNP	G	G	A			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	AAGGTGTCGTGCTAGGGATGA	0.448	13	173
WISP2	8839	broad.mit.edu;ucsc.edu	37	20	43348625	43348625	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	GCTGGATGGCTGTGGCTGCTG	0.697	5	16
HIST1H2BF	8343	broad.mit.edu;hgsc.bcm.edu	37	6	26199854	26199856	+	In_Frame_Del	DEL	AGA	AGA	-	rs150784470		TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	ACCAAGGCGCAGAAGAAGGATGG	0.522	61	131
BACH2	60468	broad.mit.edu;hgsc.bcm.edu	37	6	90660233	90660235	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	CCCGCTCCCGTCCTCCGCGTAGG	0.616	19	63
NOTCH1	4851	broad.mit.edu	37	9	139413067	139413069	+	In_Frame_Del	DEL	AGT	AGT	-			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	GGACACTCGCAGTAGAAGGAGGC	0.655	7	29
PIK3CA	5290	broad.mit.edu	37	3	178928078	178928080	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	CTCATGGATTAGAAGATTTGCTG	0.35	8	102
PIK3R1	5295	broad.mit.edu	37	5	67589147	67589149	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-HT-7481-01A-11D-2024-08	TCGA-HT-7481-10A-01D-2024-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	932ab1b0-9a7d-4906-8474-21a1809dc45c	42f07474-90cb-4b0a-aed3-08e7ff9f7b49	GGGAAATAACAAATTAATCAAAA	0.31	11	69
