Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	48390723	48390723	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	GGCCTGCTGGATGGCTTCCTG	0.597	9	47
OR5P3	120066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	7847281	7847281	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	CATGAGCATGACAGGTGTGAC	0.478	10	38
OR5P3	120066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	7847305	7847305	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TGAGGAGTACCCAATGTCTAC	0.438	12	42
DAGLA	747	hgsc.bcm.edu;broad.mit.edu	37	11	61504739	61504739	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TTCCTTCTGCGCCCACAGTAT	0.647	17	289
C11orf82	0	hgsc.bcm.edu;broad.mit.edu	37	11	82644345	82644345	+	Silent	SNP	A	A	G			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TGCCTTGGGGACATATCAATA	0.343	9	151
TAOK3	51347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	118693346	118693346	+	Silent	SNP	T	T	C			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	CGGCAATCTCTGGGTCCTTCA	0.398	12	129
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	130898840	130898840	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	AGGCGGTCTCGCCCGTAATCG	0.567	22	30
RCBTB2	1102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	49070412	49070412	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TTGGCAGAGCTTTTTCAAACG	0.463	8	56
FAM124A	220108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	51825995	51825995	+	Silent	SNP	C	C	T			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	CCATCCGGCCCGTGCACTACG	0.632	4	6
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	24788378	24788378	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	agcagccacagcagcagcagc	0.597	11	27
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	24788379	24788379	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	gcagccacagcagcagcagca	0.602	11	25
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	51171049	51171049	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TCCTTGCTGTCCTCCACGAAG	0.567	17	46
ACD	65057	hgsc.bcm.edu;broad.mit.edu	37	16	67694142	67694142	+	Silent	SNP	C	C	T			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	CTACACCCAGCGGATGCAACG	0.706	3	55
CLUH	23277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	2605307	2605307	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	AGCAGGTCTCGGACATGGCGC	0.627	12	18
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577548	7577548	+	Missense_Mutation	SNP	C	C	T	rs28934575		TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	CGGTTCATGCCGCCCATGCAG	0.577	34	22
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	29126613	29126613	+	Silent	SNP	T	T	C			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TGCCAGATTTTGGTTTAGAGG	0.473	6	54
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	34929585	34929585	+	Silent	SNP	G	G	A			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	ATCCTAAGCCGACCCAGAGAA	0.403	34	104
TMEM79	84283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	156255699	156255699	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TGATGTCCCACGGCTGCCCAC	0.607	54	140
MARC2	54996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	220936309	220936309	+	Silent	SNP	T	T	C			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	CCTGGTAGATTTGAATACCAG	0.502	10	46
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	ATAAGCATGACGACCTATGAT	0.393	13	34
ZNF860	344787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	32031226	32031226	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	ATTACTCACACTAAAACAGGA	0.333	8	37
BCLAF1	9774	hgsc.bcm.edu;ucsc.edu	37	6	136597287	136597287	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TTTAAGTTTATAATTTTTTTC	0.353	9	46
CHRNA6	8973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	42620342	42620342	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	GCACAGCCCACACAGCCTGTG	0.562	29	74
FNBP1	23048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	132757223	132757223	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	GTTTTTCTAAGTTGTCAAACT	0.333	29	99
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76909629	76909629	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TTAATACGTCGCCTTTTCTTT	0.328	29	28
UTY	7404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	Y	15410959	15410959	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	ATACACAGGGACATTTGCTTC	0.383	17	9
CEP95	90799	broad.mit.edu;ucsc.edu	37	17	62518886	62518886	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	CGAGCAGCTATTCCTTTACAT	0.483	5	46
SLC29A3	55315	broad.mit.edu;ucsc.edu	37	10	73122070	73122070	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	AATAGCAAGGCGCTCCCAGGG	0.602	30	57
CIRH1A	84916	broad.mit.edu;ucsc.edu	37	16	69199373	69199373	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	TCCCAAGAGACCGATGCACAT	0.463	11	42
GADD45GIP1	90480	broad.mit.edu;ucsc.edu	37	19	13065170	13065170	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7603-01A-21D-2086-08	TCGA-HT-7603-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	75dc5918-1fa5-4dba-bb41-e8057e228931	09b29d7c-9b2a-4808-9b8d-1fd650cc4fad	CTCCTGGAAGCGGGCACTCCT	0.622	20	34
