Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	61958113	61958113	+	Silent	SNP	T	T	C			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	TTGTTATAGATAAAGACGCTC	0.498	14	19
OR2AG2	338755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	6789589	6789589	+	Silent	SNP	G	G	A			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CACCTGTCACGTATATTATAA	0.493	10	18
SIPA1	6494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	65408733	65408733	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CTTGAGCCTCGATGGTTTGCC	0.632	67	105
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	19489486	19489486	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	GATAAGTTAGAATACGATGTA	0.348	26	40
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	101588788	101588788	+	Silent	SNP	A	A	G			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	GCTGTAGCACATTCAGAGTGA	0.448	58	35
TP53	7157	hgsc.bcm.edu;broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	GCACAAACACGCACCTCAAAG	0.542	9	0
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	34079638	34079638	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	GCCAGGAAGGCCAGGGCAGCG	0.652	23	38
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	65174991	65174991	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	AGAATCCCAACGTTTAGCTGT	0.348	17	37
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	16487940	16487940	+	Silent	SNP	C	C	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	GACCGCTGGGCGGTTTAGGCC	0.612	15	23
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	27943402	27943402	+	Silent	SNP	G	G	A			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	GCACCGAGTTGAACTGAACCC	0.562	70	141
ZSCAN20	7579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	33960425	33960425	+	Silent	SNP	T	T	G			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	GTAGTGAGCCTGGGGGAAACT	0.448	93	154
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	90400076	90400076	+	Silent	SNP	C	C	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CGGGGGTGCCCGATGCTGTCT	0.468	13	34
CFHR5	81494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	196953247	196953247	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	TGGTCCACTCCTCCCATATGC	0.348	21	49
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	197091601	197091601	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	ACCAGTTTGCGTACATTCCAC	0.413	11	25
SLC25A1	6576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	19164192	19164192	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	TTCATGGGCTTGTTGGGGTTG	0.592	12	26
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	ATAAGCATGACGACCTATGAT	0.393	35	56
VIL1	7429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	219295519	219295519	+	Silent	SNP	C	C	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CTGAGTCGGCCGTCTTTCAGC	0.597	19	47
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140249016	140249016	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	GGAGGTGATCGTGGACAGGCC	0.552	147	171
DUSP22	56940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	348774	348774	+	Silent	SNP	G	G	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	TCCAGTATCGGCAGTGGCTGA	0.522	24	103
FIGNL1	63979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	50513534	50513534	+	Silent	SNP	T	T	C			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CAGCAAACAATGCACGGACCA	0.443	50	84
ZNF138	7697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	64292367	64292367	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CTGGAGAAAAACCCTATAAAT	0.368	16	19
SEMA3C	10512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	80374454	80374454	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CCATTTGTCCGTCACAACAGC	0.478	24	39
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	75171665	75171665	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	ACAGCTCTCGCGATGTCGCAC	0.607	18	26
NUDCD1	84955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	110287672	110287672	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	ATCTCCAATTACTAGCTCTGG	0.383	11	31
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	8	144940576	144940576	+	Silent	SNP	C	C	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CCTCCTCCACCGACAGCCTCA	0.736	4	73
ZFP37	7539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	115811700	115811700	+	Silent	SNP	T	T	C			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CTTGACTGGGTCTTTTCCCCT	0.403	27	7
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	135522404	135522404	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	ACAGAAATACTGACTGGATCA	0.493	40	60
GSPT2	23708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	51488448	51488448	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	ACCCCGCTTCGTGAAACAAGA	0.418	24	24
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	77912924	77912924	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	CCTTGGCAGAGTTGATGGATG	0.463	9	23
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	123525932	123525932	+	Silent	SNP	C	C	T			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	TCCAAATTTTCCCATCAGCCC	0.378	15	8
KCNJ8	3764	broad.mit.edu;ucsc.edu	37	12	21926252	21926252	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	AGCATAGATGTCCCCATGGGC	0.507	34	37
SMARCA4	6597	broad.mit.edu;ucsc.edu	37	19	11132434	11132434	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	GGACGAAGGTCACCGCATGAA	0.622	14	19
PCDH18	54510	broad.mit.edu;ucsc.edu	37	4	138452008	138452008	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	ATAATTGTTTTCATATGTCTT	0.403	3	26
RBM41	55285	broad.mit.edu;hgsc.bcm.edu	37	X	106331986	106331986	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HT-7606-01A-11D-2086-08	TCGA-HT-7606-10A-01D-2086-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9734311d-3183-459b-8200-7104fba3bf64	7c7214f7-036a-4ac9-9883-1a93d9eb6f10	TGAAACTCTTCAAGACGTTTT	0.428	15	26
