Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	64603009	64603009	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TCTCGCAGGGCGGCCACCTCC	0.692	14	132
STOML3	161003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	39564828	39564828	+	Nonsense_Mutation	SNP	G	G	A	rs147878470		TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TCTTTATCTTGCTTCTCAGGT	0.388	20	87
CHRM5	1133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	34356257	34356257	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	ACTGAGTGCCATTCTCCTGGC	0.512	35	67
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	40915064	40915064	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TTCAGAAGACGATAAGAATGA	0.333	10	92
GPRC5B	51704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	19883181	19883181	+	Silent	SNP	G	G	C			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TCTCCATATAGGCCCGCGGCA	0.597	9	87
GPRC5B	51704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	19883826	19883826	+	Silent	SNP	G	G	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	CCTCCTGGATGATGAAGGCAA	0.612	5	27
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	53348818	53348818	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GAATTCCTGATACAGAAAGTC	0.398	14	87
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577081	7577081	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GAGATTCTCTTCCTCTGTGCG	0.562	49	22
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578266	7578266	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TCCACTCGGATAAGATGCTGA	0.557	4	47
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu	37	19	40366226	40366226	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GCGGAGATCACGCCGCAGGCG	0.726	20	74
ATAD3C	219293	hgsc.bcm.edu;broad.mit.edu	37	1	1396282	1396282	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	CTTAAGCCGGCCACAGAAGGA	0.627	7	40
RNF19B	127544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	33402666	33402666	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GCTGGCCAGGCAGTCTTTCTG	0.547	61	88
LCE3C	353144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	152573380	152573380	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	AGCCACCACAGGCACTTCAGG	0.642	74	9
SNAPIN	23557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	153633756	153633756	+	Silent	SNP	C	C	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GAATTTACCCCCCTGGCTCCC	0.507	8	38
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179417788	179417788	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	ACTGTGCCTCGAGAAACATGT	0.423	8	43
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	C	rs121913499		TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TAAGCATGACGACCTATGATG	0.398	26	54
AGAP1	116987	hgsc.bcm.edu;broad.mit.edu	37	2	236626276	236626276	+	Nonsense_Mutation	SNP	G	G	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TGTCCAGGAGGAGTCTCCGGA	0.448	16	57
AGAP1	116987	hgsc.bcm.edu;broad.mit.edu	37	2	236626277	236626277	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GTCCAGGAGGAGTCTCCGGAA	0.448	16	57
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	161918	161918	+	Silent	SNP	A	A	G			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	AGAAAGGACTACAGCTGGCGA	0.582	11	46
KIAA0319	9856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	24566850	24566850	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	CTGGCCATCCCGGATCCACAG	0.463	39	64
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	142568143	142568143	+	Silent	SNP	C	C	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TGCAGGCTGGCGGGGACCCAG	0.582	28	112
AOC1	26	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150556078	150556078	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GATCCACTCCATGGCCGACCA	0.647	6	14
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	77377091	77377091	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GTTATCAGATAGGGAGCTGTC	0.507	17	127
OR1Q1	158131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	125377695	125377695	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GGTGGTCCTCCGGATCCCCTC	0.537	34	130
BCOR	54880	hgsc.bcm.edu;broad.mit.edu	37	X	39932880	39932880	+	Silent	SNP	G	G	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TGGCATTGGGGGCGGGTGATG	0.617	4	48
RP11-24M17.5	0	broad.mit.edu;ucsc.edu	37	15	76067993	76067993	+	RNA	SNP	G	G	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	ACTCAACAGAGTAAATTGGCA	0.532	6	32
HIST1H4C	8364	broad.mit.edu;ucsc.edu	37	6	26104327	26104327	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TCCGGTCTTATCTATGAGGAG	0.542	10	51
ABO	28	broad.mit.edu;ucsc.edu	37	9	136131727	136131727	+	RNA	SNP	T	T	C			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	AGGAACAGCTTCAGGAAAGCC	0.701	36	45
HAPLN1	1404	broad.mit.edu;ucsc.edu	37	5	82937364	82937364	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	ATGCTTTTTATCTGGGAAACC	0.517	9	178
CYP4F8	11283	broad.mit.edu;ucsc.edu	37	19	15734031	15734031	+	RNA	SNP	G	G	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TGTGGACGGCGCTTCCACAGG	0.562	47	50
IFI35	3430	broad.mit.edu;ucsc.edu	37	17	41166236	41166236	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	GCCCACCCGCGGGGGCGGGGA	0.622	39	32
FOXM1	2305	broad.mit.edu;hgsc.bcm.edu	37	12	2983282	2983283	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	TTTGAGGCCGGAGTCCTGGAGG	0.54	27	119
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76938601	76938605	+	Frame_Shift_Del	DEL	AATTT	AATTT	-			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	AGATTTTGGCAATTTATTAGGCTTA	0.361	25	117
ARID1A	8289	broad.mit.edu	37	1	27056286	27056286	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7611-01A-11D-2395-08	TCGA-HT-7611-10B-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b60b581b-2e7d-4c89-af6f-2de8cf79bcd7	cbdff4de-7729-4d99-b9be-f4807a99630f	CCAGACCCCGCAGCGGTACCC	0.607	11	81
