Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SERPING1	710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57367766	57367766	+	Missense_Mutation	SNP	G	G	A	rs139035354	by1000genomes	TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	GCTCTACCACGCCTTCTCAGC	0.542	57	72
MS4A14	84689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	60183353	60183353	+	Silent	SNP	T	T	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	TCCAAGTTTTTCCATCCCATT	0.423	27	31
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	29659825	29659825	+	Missense_Mutation	SNP	C	C	T	rs35279918		TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	TTTTTCTAGGCGATCCAATTT	0.453	33	78
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	36686247	36686247	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	AGACACTGCCCGAGAAGCCGA	0.522	13	43
DIS3	22894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	73346337	73346337	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	ATGTAGAGCATCGTCTATATC	0.363	17	28
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	29237034	29237034	+	Silent	SNP	G	G	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	AGAAGCCGCCGTTCAGCTACA	0.637	12	22
ISM2	145501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	77942239	77942239	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	GCAGAAGCGCGCCGTGGGCTG	0.677	8	25
TTYH2	94015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	72249349	72249349	+	Silent	SNP	G	G	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	TGGGAAGTCAGACCAGCCTGC	0.647	20	66
EVPL	2125	hgsc.bcm.edu;broad.mit.edu	37	17	74003681	74003681	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	AGCAGGTCCACGATGCCCCCT	0.617	5	55
C3	718	hgsc.bcm.edu;broad.mit.edu	37	19	6712560	6712560	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	TACTTGGGTGTCTTGGTGAAG	0.622	15	206
ALG6	29929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	63876858	63876858	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	TGGGGTGTTCTTGGAATATCT	0.363	56	152
DLGAP4	22839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	35060961	35060961	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	CCCCAGCCTTGGGGTGGGCAC	0.632	11	8
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	170038748	170038748	+	Silent	SNP	C	C	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	CCACACAGTGCTGGGCCAGCA	0.532	34	95
ANKAR	150709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	190585366	190585366	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	AAGCCTGATAAATCTATTGAA	0.284	20	49
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	ATAAGCATGACGACCTATGAT	0.393	38	50
SETD2	29072	hgsc.bcm.edu;broad.mit.edu	37	3	47103767	47103767	+	Nonsense_Mutation	SNP	G	G	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	TCTCTCTCTTGACCTATTAGG	0.463	8	156
CCDC54	84692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	107097101	107097101	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	TCTGAAGAAACGTAACCATCA	0.378	27	42
SLC9C1	285335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	111887770	111887770	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	ATAAGTTTTTCGTAACAGACA	0.323	20	58
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	135561020	135561020	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	AGAATTCCTCATGCCAGCCTG	0.453	9	16
MEGT1	58530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	31685399	31685399	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	CTGCGTCGCAGCCCATCATTG	0.577	97	199
DST	667	hgsc.bcm.edu;ucsc.edu	37	6	56483529	56483529	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	ATCATTTTCAGTGATGACTTT	0.358	21	64
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	74229668	74229668	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	CATTTATAGATCAGATGGCCA	0.413	15	43
CD36	948	hgsc.bcm.edu;broad.mit.edu	37	7	80286000	80286000	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	TAAGCAAAGAGGTCCTTATAC	0.398	4	83
TBC1D2	55357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	100991314	100991314	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	GTTCGGTTCCGTGTGATTCCT	0.522	13	43
OR13D1	286365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	107456818	107456818	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	AGAAATTACTCTGCCATGACT	0.423	7	27
MUSK	4593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	113562782	113562782	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	TTGCCAGGCAGGTGGCAGCTG	0.567	32	121
PTGS1	5742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	125154668	125154668	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	GCCGAGCACATTTGGCGGCGA	0.537	26	67
HCCS	3052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	11135492	11135492	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	AAAGTGGGTTTACCCTTCTGA	0.383	43	34
NOL8	55035	broad.mit.edu;ucsc.edu	37	9	95077012	95077012	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	CTTCTTTGCATGTTGGCATGG	0.453	6	11
EFTUD2	9343	broad.mit.edu;ucsc.edu	37	17	42931994	42931994	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	CCAGATGGAACGGGCAGCCAG	0.567	18	31
SSPO	23145	broad.mit.edu;ucsc.edu	37	7	149482723	149482723	+	RNA	SNP	C	C	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	GGCCAGTGGCCTATTCACAGT	0.627	5	7
IQGAP1	8826	broad.mit.edu;ucsc.edu	37	15	91034589	91034589	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	GAGAGCCATGCAGAGACGTGC	0.398	4	27
SYNE2	23224	broad.mit.edu;ucsc.edu	37	14	64676802	64676802	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	CGCTGGGACAACCTTCAGAGG	0.622	8	19
KLHL28	54813	broad.mit.edu;hgsc.bcm.edu	37	14	45415078	45415078	+	Frame_Shift_Del	DEL	A	A	-			TCGA-HT-7684-01A-11D-2253-08	TCGA-HT-7684-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2a568f27-c888-41cc-8196-03e138badd58	e5c70770-2bcf-4654-8ed2-c33cd1e09326	GAAGTTGTTCAGAATGCAAGT	0.403	21	59
