Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
GLUD1	2746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	88835744	88835744	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CTTGGGATTGATCTTAACACC	0.353	27	181
H3F3C	440093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	31944718	31944718	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CCGTATCCGGCGAGCCAACTG	0.443	35	197
PDP2	57546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	66919405	66919405	+	Silent	SNP	C	C	T			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	AGGATAAGTTCCTTGTGCTGG	0.567	41	106
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	20602227	20602227	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	GACTTGTATGGAAAGAGGTGA	0.418	29	112
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	79383689	79383689	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	TGCAAAAGCAGCTAAAAAGAA	0.333	15	133
CENPF	1063	hgsc.bcm.edu;ucsc.edu	37	1	214794279	214794279	+	Silent	SNP	G	G	A	rs114104425	byFrequency	TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	AATTAAAAGCGCAGAATCAAG	0.343	20	96
FAM217B	63939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	58520040	58520040	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	ACAAGCACATGCACATCCTAG	0.458	22	93
RNF144A	9781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	7164513	7164513	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	TGCTTTCAAAATGGAAGAAGA	0.567	21	81
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	15523366	15523366	+	Silent	SNP	T	T	C			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	AATCTAGACATGTGTATACAT	0.348	40	121
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	21230343	21230343	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CGCATTTCAGGAATTGTTAAA	0.373	37	152
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	ATAAGCATGACGACCTATGAT	0.393	33	114
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	230723871	230723871	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	GGTAGGTTTCGCAGATCTCTC	0.507	24	49
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu	37	3	13679124	13679124	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	GCGCGCATCACGCACTACCAG	0.657	8	95
C3orf35	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	37458938	37458938	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CCTGCAGGGCAGTGCTCAGCA	0.463	30	98
RFT1	91869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	53126463	53126463	+	Silent	SNP	C	C	T			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CAGCCAGGGGCCTGTGGGGGC	0.592	7	12
TMEM14E	645843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	152058574	152058574	+	Silent	SNP	A	A	G			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	AGAATCCAGCAGAAGGGGACT	0.488	30	99
GNRHR	2798	hgsc.bcm.edu;broad.mit.edu	37	4	68606313	68606313	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	AGGATCAAACCAATACCAAAT	0.403	20	309
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	67589138	67589138	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CAGGAAAGGGGGAAATAACAA	0.308	11	72
TREML2	79865	hgsc.bcm.edu;broad.mit.edu	37	6	41165998	41165998	+	Silent	SNP	G	G	A			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	GCAAGTAGCGGGGCCCTTTCA	0.572	12	214
SLC35A1	10559	hgsc.bcm.edu;broad.mit.edu	37	6	88187186	88187186	+	Silent	SNP	C	C	G			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	ACAAAGAACTCTACTTTTCAA	0.358	8	130
COQ3	51805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	99817516	99817516	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	ATTGGTGCAGGCATTAGCTTG	0.403	52	234
FUCA2	2519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	143823670	143823670	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	AGCTCCCCAACGATCATTGGT	0.403	16	160
MYL10	93408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	101267513	101267513	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	GCTGGCGGTGCCTTCTGCTCT	0.587	28	84
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	127572530	127572530	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CCAGGTCGCCTACGCTTTCGA	0.637	21	71
VDAC2	7417	broad.mit.edu;ucsc.edu	37	10	76980618	76980618	+	Silent	SNP	G	G	A			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	TTGGTTATGAGGGCTGGCTTG	0.468	12	45
HAUS4	54930	broad.mit.edu;ucsc.edu	37	14	23416936	23416936	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	GCAGCGGAGAAGCACCTGAGC	0.507	28	92
TSC22D4	81628	broad.mit.edu;ucsc.edu	37	7	100064672	100064672	+	Silent	SNP	G	G	T			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	TGGCCAGGGCGCGCAGCAGCC	0.697	3	23
KIAA1024	23251	broad.mit.edu;ucsc.edu	37	15	79748620	79748620	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	TCGCAGCTTGCCAAACTGAGA	0.468	37	118
AGO1	26523	broad.mit.edu;hgsc.bcm.edu	37	1	36359738	36359739	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CCCTCACGGACTCTCAGCGCGT	0.55	11	49
FUBP1	8880	broad.mit.edu;hgsc.bcm.edu	37	1	78422330	78422331	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	GCTGTTGATAATAGTGAGCGTA	0.431	36	72
CFH	3075	broad.mit.edu;hgsc.bcm.edu	37	1	196694339	196694341	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	TGTTGAAATTCTCCTGCAAACCA	0.394	24	98
ANKRD17	26057	broad.mit.edu;hgsc.bcm.edu	37	4	73963819	73963820	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	AAACAGATTTTCTCTCTTCCTT	0.361	34	182
CLIP2	7461	broad.mit.edu;hgsc.bcm.edu	37	7	73795186	73795187	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CGAAGGAAACTGTGGAGGGTGA	0.579	63	198
OTUB1	55611	broad.mit.edu;hgsc.bcm.edu	37	11	63764577	63764579	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	GACCTGCTGGCCTCCTTCAATGA	0.591	50	254
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42793443	42793444	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HT-7694-01A-11D-2253-08	TCGA-HT-7694-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d44bae99-4be5-4d02-a261-f341afb1ebff	83cb6500-9764-4d02-b833-e3c72c7d880a	CCACTGGGCGGCCCCCGCTGCT	0.644	14	45
