Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
SPATA5L1	79029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	45713342	45713342	+	Silent	SNP	C	C	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	CGTTAAGTTGCAAGGACTTGG	0.353	8	24
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	29897045	29897045	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	GGGGATAGGGGGCTGCCCCCT	0.602	18	87
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	10533673	10533673	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	TCATCTAGACGATGCTGCAGG	0.607	21	187
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	62043903	62043903	+	Splice_Site	SNP	C	C	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	AGTAGAAGTTCCCTTTGGGAG	0.582	10	46
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	42798840	42798840	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	GACCAGCGCCGGGCCCTGGTC	0.612	18	82
MAST2	23139	hgsc.bcm.edu;broad.mit.edu	37	1	46497240	46497240	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	ACAGCCCTCTCACTCCTCATT	0.607	3	49
GBP5	115362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	89730624	89730624	+	Silent	SNP	A	A	G			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	TGGCATTGACATAGGTCAGCA	0.448	37	23
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	25972673	25972673	+	Silent	SNP	C	C	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	TGACACGTGGCCTCTTCTCCC	0.532	9	31
OTOF	9381	hgsc.bcm.edu;broad.mit.edu	37	2	26688556	26688556	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	TAGGTCTGGGCGATGCCGCAG	0.582	7	148
ARHGEF4	50649	hgsc.bcm.edu;broad.mit.edu	37	2	131797874	131797874	+	Missense_Mutation	SNP	G	G	A	rs117266463	by1000genomes	TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	GACATGTTCAGCGAGGAGCAG	0.682	4	57
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	ATAAGCATGACGACCTATGAT	0.393	26	61
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52812973	52812973	+	Silent	SNP	C	C	T	rs151186293	byFrequency	TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	CAGATGGAAACGCATTTATCG	0.547	24	81
CNR1	1268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	88854091	88854091	+	Silent	SNP	A	A	G			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	CGTGGCTGTGAGCCTTCCAGA	0.537	11	84
CASP8AP2	9994	hgsc.bcm.edu;ucsc.edu	37	6	90573819	90573819	+	RNA	SNP	G	G	C	rs3799895	by1000genomes	TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	CACTGGTTGAGAGTAAGTCGT	0.408	24	92
CDK19	23097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	110953281	110953281	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	TCTGGAGCCCGATACCAAAAT	0.358	11	105
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	86049720	86049720	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	GCCCAAAATCGTGGAAAATTG	0.333	21	34
CORO2A	7464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	100897160	100897160	+	Silent	SNP	C	C	T	rs147316581	by1000genomes	TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	CTACTCTGCGCGCGTGGCCCA	0.602	31	49
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	134455699	134455699	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	TGCTGCCACCGCTTGGAGAAG	0.632	29	54
FIGF	2277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	15365420	15365420	+	Silent	SNP	A	A	G			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	CACACTCGCAACGATCTTCGT	0.473	14	133
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	65427079	65427079	+	Silent	SNP	T	T	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	GGCTCCTGGGTTCCAGATACA	0.463	9	41
ZCCHC12	170261	hgsc.bcm.edu;broad.mit.edu	37	X	117959418	117959418	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	agtcaatggcgtcctgccaga	0.557	6	106
SLC35G5	83650	broad.mit.edu;ucsc.edu	37	8	11189480	11189480	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	CCTGCATTCCGAGGTGGTTGT	0.582	41	198
RLTPR	146206	broad.mit.edu;ucsc.edu	37	16	67688719	67688719	+	Silent	SNP	A	A	G			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	AACTGGCTCCATCCTTTGAAC	0.622	59	170
SHROOM2	357	broad.mit.edu;ucsc.edu	37	X	9905237	9905237	+	Silent	SNP	G	G	A			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	TCGTGCACTCGGAGAGCCAGC	0.587	4	17
HEATR5B	54497	broad.mit.edu;ucsc.edu	37	2	37268386	37268386	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7695-01A-11D-2253-08	TCGA-HT-7695-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	86386b36-2950-4479-b79f-4b347053c8bc	04911942-c9a9-473f-93d5-79c0c14944ac	AAACAACCAAGAGCCAATGAA	0.418	33	59
