Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MYOF	26509	hgsc.bcm.edu;broad.mit.edu	37	10	95072807	95072807	+	Silent	SNP	G	G	A			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	CTTTCTCTGCGTAGCATGGCC	0.473	30	471
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	132466834	132466834	+	Silent	SNP	G	G	A			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	TTGCACAGCAGCCGCAAGTGG	0.657	20	101
CCDC97	90324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	41826329	41826329	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	CACCAGCCGCATGCACCAGCG	0.637	10	47
CLCA2	9635	hgsc.bcm.edu;broad.mit.edu	37	1	86919122	86919122	+	Silent	SNP	C	C	T			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	GGGGCTTTAGCCGAGTCAGCT	0.463	4	52
BTG3	10950	hgsc.bcm.edu;broad.mit.edu	37	21	18966541	18966541	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	ATAACCAAATGGAACAGGAGG	0.458	5	71
SAMM50	25813	hgsc.bcm.edu;broad.mit.edu	37	22	44377307	44377307	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	AATGTTGGTACCCATTGGTGA	0.388	6	84
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	ATAAGCATGACGACCTATGAT	0.393	17	85
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178952073	178952073	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	ATGAAACAAATGAATGATGCA	0.368	19	87
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	55960997	55960997	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	CACTGAGGGACTTCTCCTCCA	0.522	27	128
UGT2B11	10720	hgsc.bcm.edu;broad.mit.edu	37	4	70070265	70070265	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	ATCAGGTTGATCAAAAAACAA	0.448	14	233
GAR1	54433	hgsc.bcm.edu;broad.mit.edu	37	4	110745576	110745576	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	TTAATCAGGGAGAGGACATTA	0.328	4	72
MROH2B	133558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	41015559	41015559	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	ACCCTGCAGTCTTTCCACTTC	0.413	10	39
HNRNPA0	10949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	137089402	137089402	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	CAAACTGCGAGAAGTGCTCGA	0.587	31	75
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	140181778	140181778	+	Missense_Mutation	SNP	T	T	G	rs140096953	by1000genomes	TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	CAATGTCAGATCACTGCACAG	0.378	21	114
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu	37	5	141035828	141035828	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	GGCCACTCCCGTTCTGGTTTA	0.522	7	117
HFE	3077	hgsc.bcm.edu;ucsc.edu	37	6	26094421	26094421	+	Silent	SNP	C	C	T			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	CAGGAGGAGCCATGGGGCACT	0.502	10	61
IP6K3	117283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	33690730	33690730	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	TCTGGTGGTTCCTGCCCATCA	0.602	12	74
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	72925148	72925148	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	GTCCAAATGCGCTCACTGTAC	0.463	34	96
LIMK1	3984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	73513495	73513495	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	GCGTGGACTTTCAGTCTCCAT	0.677	33	150
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	77913195	77913195	+	Silent	SNP	A	A	T			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	TGAAGGTTAAAGTGTATTGCA	0.502	9	33
PCDH19	57526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	99662610	99662610	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	GACCTTGCAGTGTGCCGGGAT	0.592	18	68
PRKCG	5582	broad.mit.edu;ucsc.edu	37	19	54395814	54395814	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	AGGTGTGGGACTGGGACCGGA	0.672	4	19
ZNF645	158506	broad.mit.edu;ucsc.edu	37	X	22291314	22291314	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	ATCTATGGGCGAATAATTCCG	0.383	23	93
DGKK	139189	broad.mit.edu;ucsc.edu	37	X	50127815	50127815	+	RNA	SNP	A	A	C			TCGA-HT-7874-01A-11D-2395-08	TCGA-HT-7874-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0c6a82e9-3ef8-4f1f-89ba-b936f1ebe17b	159201aa-9f74-4b4a-ba23-b6863a698317	TGCTTTCCTCATCCAGAGCTA	0.453	12	93
