Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR4C16	219428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55339961	55339961	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	GGCTGTTGACCGCTATGTGGA	0.517	106	138
OR4D6	219983	hgsc.bcm.edu;broad.mit.edu	37	11	59224594	59224594	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TGTGAGTCCCGCCTACACACT	0.458	7	115
ZNF259	8882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	116657243	116657243	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TGCAGGCTGGTCCTGCTCCAG	0.478	23	56
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	2910516	2910516	+	Silent	SNP	G	G	A			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	CTGAGGAGGAGAACAAGGTGA	0.557	35	206
TESPA1	9840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	55356531	55356531	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	CTTGGGGTTCGAATCCAGAGT	0.507	33	37
SLC39A9	55334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	69908908	69908908	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	CTATATTGGTGTTTCCCTCGT	0.483	31	205
LTK	4058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	41796600	41796600	+	Silent	SNP	G	G	A			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	GCTCAGGCTCGTGCTGCCAAC	0.592	7	71
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	2816330	2816330	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	ACCCGCCGTCGTTCAAGGTCT	0.582	64	77
RTN4RL1	146760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	1840572	1840572	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	AGCTTGTTGCCGTGGAGAAAC	0.602	8	66
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	GCACAAACACGCACCTCAAAG	0.542	14	18
LRRC37A3	374819	hgsc.bcm.edu;broad.mit.edu	37	17	62856443	62856443	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	GTGGGTTAAGTCTTTCCATCT	0.458	22	186
USH1G	124590	hgsc.bcm.edu;broad.mit.edu	37	17	72916511	72916511	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	CCGCCTCGCGGAAGGCCTTGT	0.672	4	72
CNDP1	84735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	72201914	72201914	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TGGATCCCAAACTCGGGAGAA	0.537	13	39
MAST3	23031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	18260436	18260436	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TTCGATGAGCCGCAGGAGGAG	0.667	8	33
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	27875777	27875777	+	Silent	SNP	C	C	T	rs151218177		TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TGGCTGAGGGCGGGGGCACCA	0.672	60	65
YIPF1	54432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	54331952	54331952	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	GTTATCCTCACGAACAGCTGG	0.483	44	69
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu	37	20	61511961	61511961	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	ATATTCTCTTCTGGAAACGGA	0.612	17	209
USP16	10600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	30419419	30419419	+	Silent	SNP	T	T	C			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	AGATTCTGAATGATAGTCATA	0.378	25	135
REG1A	5967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	79348733	79348733	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	ATCAGCTGCCCAGAAGGCACC	0.527	63	281
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	ATAAGCATGACGACCTATGAT	0.393	49	64
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu	37	4	96761529	96761529	+	Silent	SNP	A	A	G			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	AATTGAAGGCAGATCAGCTGT	0.537	7	136
NEUROG2	63973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	113436146	113436146	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	CGGTGAGTGCCCAGATGTAGT	0.711	9	39
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	147484546	147484546	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	AGCAAAGGCTAAAAGAGAAGC	0.328	4	34
UBE3D	90025	hgsc.bcm.edu;ucsc.edu	37	6	83754360	83754360	+	Silent	SNP	G	G	C	rs76697527	byFrequency	TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TCGGCAGTGGGAGCACCCTGA	0.403	52	89
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	152697565	152697565	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TTGAGGTATATCAAAACACTT	0.358	45	46
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu	37	7	20441726	20441726	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TCTTGTCCATATCACCATGGA	0.363	10	139
AVL9	23080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	32599062	32599062	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	CATGCCCCTGGCCATCTTCAC	0.388	29	44
PPP1R3F	89801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	49142309	49142309	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TCTGACGTTCCGATGACTGGC	0.577	23	44
SCN2A	6326	broad.mit.edu;ucsc.edu	37	2	166179921	166179921	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	CATGAATGGGAAGATGCATAG	0.617	6	46
ZNF319	57567	broad.mit.edu;ucsc.edu	37	16	58030901	58030901	+	Silent	SNP	C	C	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	GCCGCTCGGCCGCGCCGGGCA	0.657	14	41
STXBP5L	9515	broad.mit.edu;hgsc.bcm.edu	37	3	120628568	120628569	+	In_Frame_Ins	INS	-	-	CGC			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	GTTCTCAGAGAGGAAATTCAGG	0.48	17	30
PLCH1	23007	broad.mit.edu;hgsc.bcm.edu	37	3	155215187	155215187	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	AGCTTCATGGTTTTCCTTCGG	0.468	56	81
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7577076	7577077	+	Frame_Shift_Ins	INS	-	-	C			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	TTGCGGAGATTCTCTTCCTCTG	0.569	33	43
ATRX	546	broad.mit.edu;hgsc.bcm.edu	37	X	76939673	76939674	+	Frame_Shift_Ins	INS	-	-	T			TCGA-HT-7884-01B-11D-2395-08	TCGA-HT-7884-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	e8c13d36-7c29-4e40-8f16-98ea5d746d85	3dc318b4-b8f0-4bc3-87b8-6b29b91f13bf	GTCTCAATCAGTTTTTTTGCCT	0.366	71	136
