Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
RSF1	51773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	77386296	77386296	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	AAACTCATCTTGAGATCTGTC	0.393	20	21
AMOTL1	154810	hgsc.bcm.edu;broad.mit.edu	37	11	94554698	94554698	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CCTTGCAGCCGCCCATGCCAA	0.602	3	46
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	22069947	22069947	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GATGCAGAAACGCAGGTTTGA	0.418	35	192
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	75692508	75692508	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CCTTTTCTTCGTCCACACTGA	0.353	13	30
DDX51	317781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	132626153	132626153	+	Splice_Site	SNP	T	T	C			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CCATCAGCTCTACAGACCAGA	0.622	21	36
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu	37	13	88329500	88329500	+	Silent	SNP	A	A	G			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CAGATGTAGTAGTTTCCACGC	0.592	19	219
TMTC4	84899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	101294549	101294549	+	Silent	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TGGAAGAATGCGCTCCCTCCT	0.468	53	124
CCDC33	80125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	74623086	74623086	+	Silent	SNP	G	G	A			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	AGAATGAGCTGATTCGAGTGA	0.567	32	51
MYH11	4629	hgsc.bcm.edu;broad.mit.edu	37	16	15820745	15820745	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CGCCCGGGCCCGCTCCCCATC	0.647	89	111
KCNG4	93107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	84270707	84270707	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	AGCTTCCCGGCCGCCAGGAAG	0.637	28	62
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343		TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GCACAAACACGCACCTCAAAG	0.542	14	27
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu	37	17	17717650	17717650	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GGCTGGACCAGACTCTGCCTT	0.642	6	5
RPL23	9349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	37006642	37006642	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TTGTTCACTATGACTCCTGCA	0.423	43	70
NAGLU	4669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	40695939	40695939	+	Nonsense_Mutation	SNP	G	G	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CGATTTCTACGAGCAGAACAG	0.617	5	12
G6PC	2538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	41063361	41063361	+	Missense_Mutation	SNP	C	C	T	rs149486847		TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TGCAAGAGTGCGGTAGTGCCC	0.572	92	121
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	42949920	42949920	+	Missense_Mutation	SNP	C	C	A			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GGATCAGGTTCTCATCAGTGG	0.562	107	165
AADACL4	343066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	12726312	12726312	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CCTCTCCTGGCGTGACGCCAT	0.502	19	110
SIRPD	128646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	1517874	1517874	+	Silent	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CAGGCAGGGCCGAGAGGCAGG	0.592	60	110
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	ATAAGCATGACGACCTATGAT	0.393	25	37
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	226446836	226446836	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GGGCAGCCCCGCGGGAGACCC	0.597	104	107
GRM7	2917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	7503380	7503380	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CCGTCTGATCGGGCAGTGGAC	0.468	70	118
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	97868537	97868537	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CAGTTGTTTTCGTTTGCAATC	0.393	84	46
PLCH1	23007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	155200026	155200026	+	Silent	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	AAACTGTGTTCGTTGCATGTT	0.468	76	96
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	1409222	1409222	+	Missense_Mutation	SNP	T	T	G			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TCCAGGAGCGTGAAGACGTAG	0.582	12	14
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	26056630	26056630	+	Silent	SNP	G	G	C			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GCGCGGCAGCGGGAGCGGCAG	0.617	36	64
SIM1	6492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	100898211	100898211	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GGGGCTACCACGAAGATGAAG	0.527	61	118
AGAP3	116988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	150840954	150840954	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TGTGGCTTAGCGCCTACCCCC	0.647	79	99
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	131512920	131512920	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GGATTCCATGCCATTCAGCAC	0.627	38	32
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	135211887	135211887	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GCAGTCAAGATAGCCCAACGC	0.348	37	66
ARMC9	80210	broad.mit.edu;ucsc.edu	37	2	232079592	232079592	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GGTGTTCTTCGATCTGTGGGA	0.453	20	54
SREBF1	6720	broad.mit.edu;ucsc.edu	37	17	17717630	17717630	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TTCTCACAGATGGTCAGGCTG	0.657	6	5
GOLGA4	2803	broad.mit.edu;ucsc.edu	37	3	37402755	37402755	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TCGCAGTGGTATCTTCTGAGT	0.353	9	60
CNGB1	1258	broad.mit.edu;ucsc.edu	37	16	57918281	57918281	+	Silent	SNP	G	G	A			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CGGGTGGGTCGGTGGCGGCCT	0.716	7	62
CRLF2	64109	broad.mit.edu;ucsc.edu	37	X	1317467	1317467	+	Missense_Mutation	SNP	G	G	T			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CAGTCGCTTGGGTATGTGTCT	0.532	70	111
ANGPTL3	27329	broad.mit.edu;hgsc.bcm.edu	37	1	63063515	63063517	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	AGTGAAATCAAAGAAGAAGAAAA	0.325	24	14
FUBP1	8880	broad.mit.edu;hgsc.bcm.edu	37	1	78428470	78428471	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TCTTTTCTTCTATGAGTTGCCG	0.337	30	9
SCYL3	57147	broad.mit.edu;hgsc.bcm.edu	37	1	169845143	169845146	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GAGAAACTTTACAAACAGTTTCCA	0.441	17	45
CELSR3	1951	broad.mit.edu;hgsc.bcm.edu	37	3	48699364	48699365	+	Frame_Shift_Ins	INS	-	-	G			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GGCCCCTGGAAGACAGTTCCGC	0.658	69	119
LAMA2	3908	broad.mit.edu;hgsc.bcm.edu	37	6	129762070	129762072	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TCGATGGCCTGAAGAAGAATTAC	0.438	21	41
C1GALT1	56913	broad.mit.edu;hgsc.bcm.edu	37	7	7278106	7278109	+	Frame_Shift_Del	DEL	AATT	AATT	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	ACTGGAAAACAATTAAAGCTTTTC	0.358	23	55
CREB3	10488	broad.mit.edu;hgsc.bcm.edu	37	9	35736657	35736660	+	Frame_Shift_Del	DEL	AAGG	AAGG	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CAAATCTCACAAGGAAGGGAGGAT	0.583	65	223
MEGF9	1955	broad.mit.edu;hgsc.bcm.edu	37	9	123374758	123374760	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TGATAAAATCCTTCTTTACATTC	0.374	13	26
NOTCH1	4851	broad.mit.edu;hgsc.bcm.edu	37	9	139412725	139412727	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TGCATGCGTCGTTGAGGTGGCAC	0.67	13	23
KAT6B	23522	broad.mit.edu;hgsc.bcm.edu	37	10	76784946	76784949	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GGAAGAAAAGACAAACAGAGGAAG	0.451	13	34
PLEKHB1	58473	broad.mit.edu;hgsc.bcm.edu	37	11	73362876	73362877	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GCCTGCTGACTGTGAACCTACG	0.624	22	35
TCF12	6938	broad.mit.edu;hgsc.bcm.edu	37	15	57484478	57484479	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	CACTCCATGACTCTGCAGCGCT	0.46	40	83
KCNG4	93107	broad.mit.edu;hgsc.bcm.edu	37	16	84270753	84270755	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	GGCTCCTGTCGAAGAAGAACTCC	0.626	28	72
C3P1	388503	broad.mit.edu;hgsc.bcm.edu	37	19	10157411	10157413	+	RNA	DEL	GAA	GAA	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	TCCAGCGGATGAAGAAGAGGACT	0.527	14	31
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42794910	42794911	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-HT-8105-01A-11D-2395-08	TCGA-HT-8105-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	04366e06-f986-4c65-8fbb-36d1dd3f6521	029fdf74-3d3a-48a6-b2b0-76d10fe7fd59	AGCAGCTCCCCTGTCCCGTCCT	0.688	17	9
