Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
NTN4	59277	hgsc.bcm.edu;broad.mit.edu	37	12	96181099	96181099	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	AGTCAGATCCGTGTTCTCACT	0.537	11	42
ACADS	35	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	121176335	121176335	+	Splice_Site	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GGTCCCCACAGCAAACCCTGG	0.682	10	36
F7	2155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	113770051	113770051	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GGGCACCAAGCGCTCCTGTCG	0.617	8	27
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	88652226	88652226	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	CCCTTCAGGCGCAGGTTGTTG	0.607	19	42
CACNG3	10368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	24373167	24373167	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GGCCAACAGGCGCACCACGCC	0.562	13	43
ADCY7	113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	50325794	50325794	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	ACCCAGTGTCCGGGTGGGGCT	0.652	12	35
CBFA2T3	863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	88967963	88967963	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GATGCGGCAGGCGGTGGGGGC	0.701	17	38
GSDMB	55876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	38073447	38073447	+	Silent	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	TTCTCTTCTCCCCCACCAGAT	0.483	31	84
SHD	56961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	4284902	4284902	+	Splice_Site	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	AGAAACAGCCGTGAGTGGGGA	0.587	26	43
IQGAP3	128239	hgsc.bcm.edu;broad.mit.edu	37	1	156499981	156499981	+	Silent	SNP	G	G	C			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GGTTCCGCAGGACGCGCCGCT	0.647	6	11
RXRG	6258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	165389159	165389159	+	Silent	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GAGATCCGGGGCTGGTGGATG	0.522	12	39
H3F3A	3020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	226252059	226252059	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	TACCATGGCTCGTACAAAGCA	0.498	13	21
SPATA2	9825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	48522793	48522793	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	AAGCACATCCGGGCTGCCGTG	0.637	32	69
CBLN4	140689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	54579018	54579018	+	Silent	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	AGAAGGCGACCTTGGAGTTGG	0.637	36	109
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	45620175	45620175	+	Silent	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	CTGCAATTTTCTCCATTCCTT	0.403	26	40
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179443857	179443857	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GAGATAGTTCCTTCCTTGGTG	0.443	13	34
ACKR2	1238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	42907140	42907140	+	Silent	SNP	A	A	G			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	TGGGGAATAAATCAGCCTGAG	0.502	14	24
IMPDH2	3615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	49065256	49065256	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GGGATACCGCAGAAACCATGC	0.542	15	45
FAIM	55179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	138341217	138341217	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	ACCAATACTTGGGTATTACAC	0.333	14	26
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	13600828	13600828	+	Missense_Mutation	SNP	T	T	C			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	TTGGTGGTACTGGTTTTCAAG	0.468	8	12
HHIP	64399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	145636526	145636526	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GGCACTAGTGGGTCCTGTAGA	0.428	16	34
PRICKLE4	29964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	41753227	41753227	+	Silent	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	AACTCTACTGCGGCCGTCATC	0.622	19	46
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	138601169	138601169	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GACCAGCGGCGTGCTGATGGT	0.547	18	29
CDCA7L	55536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	21956473	21956473	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	TCTTCATCATCACTGGGGGCG	0.463	30	143
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	55211080	55211080	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	CAGATCATCAGAGGAAATATG	0.423	692	45
LEP	3952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	127892092	127892092	+	Silent	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GAACCCTGTGCGGATTCTTGT	0.488	23	87
B4GALT1	2683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	33135343	33135343	+	Silent	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	CATAGCGGCCGCCCATCTTCA	0.557	12	36
C5	727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	123812513	123812513	+	Silent	SNP	C	C	T	rs35352264	byFrequency	TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	AAAGTATTCCCAAAAGGCCCA	0.373	23	51
CREBBP	1387	broad.mit.edu;ucsc.edu	37	16	3781375	3781375	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	AAGGCGTCGCGCCCATCCATG	0.642	6	16
RNF175	285533	broad.mit.edu;ucsc.edu	37	4	154636798	154636798	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	TGTAGGCAACCGGCTGACACT	0.502	10	19
PRDM9	56979	broad.mit.edu;ucsc.edu	37	5	23522989	23522989	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	TGGATACTCCTGGCTGGTAAG	0.493	20	51
CALN1	83698	broad.mit.edu;ucsc.edu	37	7	71571179	71571179	+	Silent	SNP	G	G	A	rs139754746		TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	GCTCCACCTCGCTTGGCATGT	0.592	10	31
CRYBB2P1	1416	broad.mit.edu;ucsc.edu	37	22	25855471	25855471	+	RNA	SNP	C	C	T			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	CTTTGGGGCCCGTCACCCTCA	0.627	12	37
NLRP1	22861	broad.mit.edu;ucsc.edu	37	17	5462410	5462410	+	Missense_Mutation	SNP	G	G	A			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	TTTTCCTTCCGCTTCATCTGC	0.547	28	69
RABEPK	10244	broad.mit.edu;hgsc.bcm.edu	37	9	127996226	127996226	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	AAGGGGAAATCTATGACGATT	0.388	32	89
PLCE1	51196	broad.mit.edu;hgsc.bcm.edu	37	10	96053387	96053387	+	Frame_Shift_Del	DEL	T	T	-			TCGA-HT-8110-01A-11D-2395-08	TCGA-HT-8110-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	6dbc06d4-1ab9-42f1-afd6-dd23af867c55	b325a96a-ae13-4143-a715-7e57b29f83ad	TAACAAAACATCTGGAAAAAG	0.388	11	24
