Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MPP7	143098	hgsc.bcm.edu;broad.mit.edu	37	10	28414006	28414006	+	Silent	SNP	C	C	T			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	GTTCATCCTTCTTAATGGTAG	0.403	7	125
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	134752146	134752146	+	Silent	SNP	G	G	A			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	GACTCAGCACGTTTATGATTT	0.577	33	77
OR5AN1	390195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	59132063	59132063	+	Silent	SNP	C	C	T			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	CCTGGAACCTCTCCCTCATTG	0.428	49	203
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	76877199	76877199	+	Missense_Mutation	SNP	T	T	A			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TCCAGGCCGATGTCGCCATGG	0.587	13	40
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	85518292	85518292	+	Silent	SNP	A	A	G			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	AGCCTAGTGAAAAAATGTAAG	0.323	50	98
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	118199044	118199044	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	GTGCCGCTGCCGGGGCGATGG	0.716	85	102
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	121790075	121790075	+	Silent	SNP	C	C	G			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TGATGCCGAACACATTGGCGT	0.632	17	90
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	122012481	122012481	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TCGGACTGTGAAATCAGGGTC	0.567	33	88
SOS2	6655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	50655245	50655245	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TATCAGAAAGAAAGGCTTCTC	0.338	11	61
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	81209521	81209521	+	Missense_Mutation	SNP	G	G	C			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	AAATTCCTGAGTTGTTGTCTG	0.418	37	54
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578475	7578475	+	Missense_Mutation	SNP	G	G	T	rs137852790		TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	GGTGCCGGGCGGGGGTGTGGA	0.612	19	66
TMEM104	54868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	72832811	72832811	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TCATCCTCAGCGAGACCAAGC	0.602	14	44
SLC44A5	204962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	75685524	75685524	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	GATTGAGAGCAAAATGAAAGT	0.368	7	39
ST6GALNAC3	256435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	77093225	77093225	+	Missense_Mutation	SNP	A	A	T			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	CTACGGGATGATAAATGACAC	0.413	38	165
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	161967933	161967933	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	GCATGGTTGGCGATGCTGGGA	0.612	54	175
DERL3	91319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	24179853	24179853	+	Silent	SNP	G	G	A			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	CACCCAGCAGGTCCACGAGGA	0.642	8	32
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu	37	2	135180442	135180442	+	Missense_Mutation	SNP	C	C	G			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TTGACCTCAACAATCAGGAGG	0.448	17	81
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179413638	179413638	+	Silent	SNP	G	G	A	rs140576051	by1000genomes	TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	CACAGCTGTCGCCTTTTCCAG	0.423	21	78
DNAJC10	54431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	183593668	183593668	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	AATGCTTTGCCGAATGAAAGG	0.378	17	99
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	ATAAGCATGACGACCTATGAT	0.393	23	82
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	114070216	114070216	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	ACGCTGTGCTGTGGGTGGCTC	0.657	33	95
STK32B	55351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	5461892	5461892	+	Nonsense_Mutation	SNP	C	C	G			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	GCGTGCCCTACTTGGCCGACA	0.562	12	128
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	23815630	23815630	+	Silent	SNP	T	T	C			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TGGAGAATTGTTCATTACTGA	0.458	30	117
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	54784174	54784174	+	Missense_Mutation	SNP	C	C	T			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TGGAGTAACACATTTCACAGT	0.537	29	120
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76890195	76890195	+	Splice_Site	SNP	C	C	G			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	AACTGAACACCTAAAAATAAC	0.353	35	133
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	101970909	101970909	+	Missense_Mutation	SNP	A	A	G			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	AAAGATGTTGACAGTGATAGG	0.483	14	89
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	140995062	140995062	+	Silent	SNP	T	T	C			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TCCAGTCTTCTCTCCAGAGCC	0.567	142	426
TSC2	7249	broad.mit.edu;ucsc.edu	37	16	2122981	2122981	+	Missense_Mutation	SNP	A	A	C			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	ACAAAACCAAACAGGTAGGAG	0.547	12	46
TP53	7157	broad.mit.edu;ucsc.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652		TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	GATGGGCCTCCGGTTCATGCC	0.572	13	73
ACSM2A	123876	broad.mit.edu;ucsc.edu	37	16	20492162	20492162	+	Silent	SNP	G	G	A			TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	TTGGACCCTCGGAGGTAGAGA	0.567	22	98
FAM65A	79567	broad.mit.edu;ucsc.edu	37	16	67578714	67578714	+	Silent	SNP	G	G	A	rs146173403		TCGA-HT-8563-01A-11D-2395-08	TCGA-HT-8563-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	3c1bab17-40da-40e8-9739-c360d082f6bd	fde28c63-fec0-4e41-a02d-54bbb121fbc9	GGGAGATCCCGGCCAGCTCTG	0.652	30	100
