Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
MPP7	143098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	28345529	28345529	+	Silent	SNP	T	T	C			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	GCTTAAATTCTAGTGTCCTTA	0.333	50	49
OR52I2	143502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	4608789	4608789	+	Missense_Mutation	SNP	C	C	G			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CCTCCTATATCTTAATTCTCA	0.488	64	46
OR51L1	119682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	5021019	5021019	+	Silent	SNP	T	T	C			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	TTGGGAAGCATCTGTCTCCCA	0.463	5	34
MRGPRX3	117195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	18159642	18159642	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CTGCAGGACACGCCTGAGGTG	0.562	28	11
OR9G4	283189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	56510829	56510829	+	Silent	SNP	G	G	A	rs149257582		TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	TACAGAGGGCGGTGGACATGG	0.478	15	191
PTGR2	145482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	74347933	74347933	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	ATTAAATTATAAAGACAAATT	0.358	51	66
ISLR	3671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	74467824	74467824	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	GGACAACATCGCCTGCACCTC	0.652	14	52
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	1706072	1706072	+	Silent	SNP	C	C	T			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	GTGCCAAGGACGCCCACGTGC	0.706	10	16
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652		TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	GATGGGCCTCCGGTTCATGCC	0.572	26	41
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CCTTCCACTCGGATAAGATGC	0.552	25	22
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	47570840	47570840	+	Silent	SNP	G	G	A			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	AGGTGGGCAGGGCGCGAGCCA	0.701	13	19
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	41978828	41978828	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	GGGAGAGCGCCCATGCCCCTT	0.632	31	39
CD1E	913	hgsc.bcm.edu;ucsc.edu	37	1	158325319	158325319	+	Silent	SNP	G	G	A			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	GATTTCTAGCGGGGCTCATGG	0.478	4	33
OR2T1	26696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	248570030	248570030	+	Silent	SNP	C	C	T	rs148427102		TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CAGCCCTCTACGAGACAGTGA	0.493	36	49
MYH7B	57644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	33581234	33581234	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	AGCCGTGGCCGCCTCATGCGC	0.672	14	19
DGCR2	9993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	19026633	19026633	+	Splice_Site	SNP	G	G	A	rs146027196		TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	AAGCATCATCGTCTGCAGGAA	0.622	14	33
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	21226157	21226157	+	Missense_Mutation	SNP	C	C	T	rs149273387		TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	ATCAGATTCCCGGACCCTCAA	0.408	122	242
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	166211024	166211024	+	Missense_Mutation	SNP	G	G	C			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	ATAGGCAGCAGTGTAGAAAAA	0.388	30	52
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	ATAAGCATGACGACCTATGAT	0.393	28	50
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	15719776	15719776	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CCTGTAGAGTCCACAGAATTG	0.398	17	17
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	18435971	18435971	+	Missense_Mutation	SNP	C	C	A			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CTGTTAAAAGCCACACGTGCA	0.433	47	104
SLC4A7	9497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	27439832	27439832	+	Missense_Mutation	SNP	G	G	C			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	ACACCACGAAGTTTTTTACAT	0.363	50	48
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	108195254	108195254	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CTGTTCTATAGTTTGACCTCT	0.338	28	26
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	45262407	45262407	+	Silent	SNP	C	C	T			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CTTCATTTTTCGGCGTGGAGC	0.652	33	35
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	96215430	96215430	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CACAGAAAACCAATGTTTAAC	0.373	8	92
LIMK1	3984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	73511062	73511062	+	Missense_Mutation	SNP	C	C	G			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CATGGGTGCTCTGAGCAAATC	0.597	18	40
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	86021973	86021973	+	Missense_Mutation	SNP	T	T	G			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	ATTGAAGGACTAAACACACTG	0.323	9	12
RASEF	158158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	85607825	85607825	+	Missense_Mutation	SNP	G	G	C			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	TCTTACCATGGCCAGTTTCTC	0.473	82	184
ZNF189	7743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	104170609	104170609	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	AAGTTTTAGTCGCAGTTCATT	0.413	37	112
CAMSAP1	157922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	138713009	138713009	+	Silent	SNP	G	G	A			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	TGTAACTGTCGAAGAGACACT	0.567	107	112
PBDC1	51260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	75396760	75396760	+	Missense_Mutation	SNP	C	C	G			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	TTGTTGAAGACTTCAACTATG	0.423	34	88
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	76940431	76940431	+	Splice_Site	SNP	C	C	T			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	TATTACCTACCTACATTGTTC	0.328	36	71
PLS3	5358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	114882253	114882253	+	Missense_Mutation	SNP	T	T	G			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	GTGGATTTAATTGATGCCATC	0.403	66	108
ZNF275	10838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	152612569	152612569	+	Silent	SNP	G	G	A			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	GGGGGGTGGCGGAGTTTAATG	0.607	19	19
CANT1	124583	broad.mit.edu;ucsc.edu	37	17	76991172	76991172	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	TCCACGCTGCCCTTGTAGCCC	0.652	3	3
AKAP5	9495	broad.mit.edu;hgsc.bcm.edu	37	14	64936370	64936374	+	Frame_Shift_Del	DEL	AATAA	AATAA	-			TCGA-HW-8319-01A-11D-2395-08	TCGA-HW-8319-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fb65935e-13c0-445a-aa77-e8dde888957e	cc240084-66ac-4c53-a3ee-12444b168db2	CTCTGATGATAATAAAATAAACAAT	0.341	21	86
