Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
ZNF33B	7582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	43088769	43088769	+	Silent	SNP	A	A	G			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	GCGTTCTCTGATGTATTGTGA	0.428	26	119
MRPL43	84545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	102739072	102739072	+	Missense_Mutation	SNP	T	T	C			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	GCGGACAGCATAGGGGCTGGA	0.502	55	63
PACSIN3	29763	hgsc.bcm.edu;broad.mit.edu	37	11	47202192	47202192	+	Silent	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	GCCGCTCAGCCGCCGTGAAAA	0.677	7	79
DDX51	317781	hgsc.bcm.edu;broad.mit.edu	37	12	132625414	132625414	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	CCCGAATCCCCGTCCCCATCT	0.617	8	131
ITGAE	3682	hgsc.bcm.edu;broad.mit.edu	37	17	3664729	3664729	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	AGCCTGGGGACGGAGGTCAGG	0.557	8	106
RNF112	7732	hgsc.bcm.edu;broad.mit.edu	37	17	19316087	19316087	+	Silent	SNP	T	T	A	rs68012060		TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	CGCTGCCCCCTGCACTGCAGG	0.627	4	44
CNTD1	124817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	40956252	40956252	+	Silent	SNP	A	A	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	GGTTTATGGTAAAACAGGCAG	0.438	29	36
CNTD1	124817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	40956254	40956254	+	Missense_Mutation	SNP	A	A	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TTTATGGTAAAACAGGCAGAG	0.438	28	37
CARD14	79092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	78169012	78169012	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TCGGACCTGAGTGCCACGTCC	0.677	16	66
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	186056428	186056428	+	Silent	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	ATCAAGCTGGCGAAAGCAAGA	0.348	42	44
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	216062131	216062131	+	Silent	SNP	G	G	A			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	GTGCCCCTGGGAGTGTCCATA	0.502	21	47
CTNNBL1	56259	hgsc.bcm.edu;broad.mit.edu	37	20	36431347	36431347	+	Nonsense_Mutation	SNP	C	C	A			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	CAGACAACTGCCATAAGTTTG	0.478	5	85
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	ATAAGCATGACGACCTATGAT	0.393	32	46
ALPPL2	251	hgsc.bcm.edu;broad.mit.edu	37	2	233274354	233274354	+	Silent	SNP	G	G	A			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	AGGACGTGGCGGTGTTCGCGC	0.667	15	18
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu	37	3	48699299	48699299	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	GAACCTGATGCAGGAGCTGTC	0.701	10	111
VPS8	23355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	184714255	184714255	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	GTACAAGAGACGCCAAGAAAT	0.413	9	47
TBC1D19	55296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	26640408	26640408	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	AGTTGGAGAACAGAAAGAACT	0.308	26	38
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	111397908	111397908	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TTGGAGGAGGACACCTACACG	0.622	25	191
NPY2R	4887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	156135956	156135956	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TGCCTTCCAGCTTGCCGTTGA	0.517	11	40
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	24193003	24193003	+	Silent	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	AAGATGAGTGCGACCTGCCTG	0.433	8	35
ANGPT1	284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	108306212	108306212	+	Silent	SNP	A	A	G			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TTCCATCTTCACGATGTTGTA	0.343	18	82
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144940776	144940776	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TAGCGCTTGACGCGGTCGTCC	0.627	41	211
SPAG8	26206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	35811425	35811425	+	Silent	SNP	G	G	A			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TGAGCTCAGAGTCAGGGCCAG	0.627	32	140
PALM2-AKAP2	445815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	112898643	112898643	+	Silent	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	CTGATCACCACGAATCCCTGG	0.493	92	108
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	117695460	117695460	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	CTACTTGGACGCCTGCATTGA	0.378	19	35
ZFPL1	7542	broad.mit.edu;ucsc.edu	37	11	64855533	64855533	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	AGCTGACAGCGATCCCAACCT	0.662	21	171
MGARP	84709	broad.mit.edu;ucsc.edu	37	4	140187905	140187905	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TTATCATTATCGATGGTGACA	0.468	44	182
CLCA1	1179	broad.mit.edu;ucsc.edu	37	1	86957002	86957002	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	CTCATTGATGCTTTTGGGGCC	0.383	6	44
ZFHX4	79776	broad.mit.edu;hgsc.bcm.edu	37	8	77616608	77616608	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TACAGAAATACATGGAACACC	0.498	94	163
TP53	7157	broad.mit.edu;hgsc.bcm.edu	37	17	7577576	7577582	+	Frame_Shift_Del	DEL	GTTGTAG	GTTGTAG	-	rs144340710		TCGA-HW-8320-01A-11D-2395-08	TCGA-HW-8320-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	25810971-a72b-4635-a466-98bfda6e656a	e934d4ae-b158-4ffd-8151-ee7d7ded6e56	TACACATGTAGTTGTAGTGGATGGTGG	0.57	51	10
