Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
BRAP	8315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	112110475	112110475	+	Missense_Mutation	SNP	T	T	C	rs150096881		TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	ATCTTCAGATTTGAGCACTTC	0.363	27	47
REC8	9985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	24642224	24642224	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	ATCCGCGTCTATTCTCAACAA	0.617	58	85
ADSSL1	122622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	105209429	105209429	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	CTGCAGACCCGCGGCCACGAG	0.612	46	77
RBFOX1	54715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	7629894	7629894	+	Missense_Mutation	SNP	G	G	T			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	TTCAGGTTCCGGGATCCGGAC	0.542	24	50
METTL16	79066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	2371168	2371168	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	GGCACTTTCACCACTAGGAGA	0.398	12	71
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	11143994	11143994	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	CGAGCCCACCGCATCGGGCAG	0.612	38	79
GIPC1	10755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	14591417	14591417	+	Silent	SNP	G	G	A			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	TGATGAAGGCGTAGCCAGCCC	0.657	57	63
TFPT	29844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	54611508	54611508	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	CTCATTCTCCGCATTGCCTGG	0.677	11	9
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	196250118	196250118	+	Splice_Site	SNP	T	T	C			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	GTGATTTTCATCTATAACACA	0.348	9	16
C1orf186	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	206243208	206243208	+	Silent	SNP	G	G	A			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	GCAGGAAGAGGGACACCACCG	0.527	35	54
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	222805521	222805521	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	GCAACCACTGCATGAAGATAA	0.498	17	106
APOL1	8542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	36661324	36661324	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	TCCTCGGTTGAAAAGTGAGCT	0.478	63	97
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	ATAAGCATGACGACCTATGAT	0.393	32	53
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	78685111	78685111	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	ATTGACAAAACGCCCATCCTT	0.473	60	77
RAD17	5884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	68689027	68689027	+	Missense_Mutation	SNP	T	T	C			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	CCCTCTCATTTATCAGAATAT	0.313	13	27
KCNN2	3781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	113698887	113698887	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	CGACTACGCGCTCATCTTCGG	0.597	18	58
SERPINE1	5054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	100779018	100779018	+	Silent	SNP	G	G	A			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	TCCACGTCGCGCAGGCGCTGC	0.587	36	118
TAS1R3	83756	broad.mit.edu;hgsc.bcm.edu	37	1	1267913	1267913	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	TGCACGAGTTCCCCCAGTACG	0.692	15	29
NEU2	4759	broad.mit.edu;hgsc.bcm.edu	37	2	233898908	233898909	+	Frame_Shift_Ins	INS	-	-	G			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	GACGCGCAGACGGGGACCCTCT	0.619	32	161
NOTCH1	4851	broad.mit.edu	37	9	139399848	139399848	+	Frame_Shift_Del	DEL	G	G	-			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	GGCCGTCACTGAAGTACTTCC	0.617	18	21
NOTCH1	4851	broad.mit.edu	37	9	139395301	139395301	+	Splice_Site	SNP	T	T	G			TCGA-HW-8322-01A-11D-2395-08	TCGA-HW-8322-10A-01D-2396-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fbb7361c-879c-4964-b6c8-07b5d8d4da46	088c5f2e-ee43-4263-9962-ef89954380a7	TGAAGCCATCTGCAGAGGCAG	0.701	3	30
