Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	19970369	19970369	+	Silent	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	AAGCAGGAGACGCCCCCTCAA	0.617	11	78
ADAMTS15	170689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	130332501	130332501	+	Silent	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	GCGTGGGCTCCAAGCCCTGTC	0.647	17	129
PRB3	5544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	11420209	11420209	+	RNA	SNP	G	G	A			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	TTTCCAGCGGGAGGTGGCAGA	0.622	36	220
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	86374059	86374059	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	ATGGCATCACGCCAGGAAGAA	0.398	12	78
SLC13A2	9058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	26817446	26817446	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	GTCTTCCCGCCGCTCAGCCAT	0.612	40	264
LRRC37B	114659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	30349672	30349672	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	GGATTCATTGGTGCAGTCTGA	0.507	23	115
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	22805969	22805969	+	Missense_Mutation	SNP	T	T	G			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	AGCACCACATTGATTACAGAT	0.478	23	147
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	9646905	9646905	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	TCAGCAGCTGCCATCCCGCGA	0.463	11	74
EHD2	30846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	48229108	48229108	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	TTCGCGGAGCGCGTGGACCTC	0.637	10	52
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	39876726	39876726	+	Silent	SNP	A	A	G			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	CGAGGGCCACAAAAAGTTTAG	0.512	10	29
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	34059913	34059913	+	Silent	SNP	T	T	C			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	ATGAAGCATCTCTTAGTAGGA	0.423	33	186
YTHDF1	54915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	61833842	61833842	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	TTATTGGGTACATCCTTAACA	0.537	15	82
VAMP5	10791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	85818866	85818866	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	AGAGTTGGAGCGGTGCCAGCA	0.602	20	102
AMER3	205147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	131521800	131521800	+	Nonsense_Mutation	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	CATGCTGGAGCAGAAACAGTC	0.632	12	45
FN1	2335	hgsc.bcm.edu;ucsc.edu	37	2	216288193	216288193	+	Missense_Mutation	SNP	G	G	C			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	TTGTTGTATAGGAAGGGGAAG	0.463	6	55
RARB	5915	hgsc.bcm.edu;ucsc.edu	37	3	25470378	25470378	+	Splice_Site	SNP	A	A	G			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	ACACTGCTCAATGTAGGTTTA	0.433	6	40
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	48678778	48678778	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	CGCTGGGCCCGGCCCAGAGAA	0.652	25	125
COPB2	9276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	139085462	139085462	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	TGGAATGGTAGGAAGGACCTT	0.398	11	45
DNAJB14	79982	hgsc.bcm.edu;ucsc.edu	37	4	100822294	100822294	+	Missense_Mutation	SNP	T	T	C			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	TTTTGCTGCATACTGCATATC	0.373	8	59
ABLIM3	22885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	148617131	148617131	+	Missense_Mutation	SNP	T	T	C			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	CAGATACATGTCCGACGAGAT	0.522	29	117
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	160049524	160049524	+	Silent	SNP	G	G	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	TGTCTGACAAGGTCTCCAACC	0.488	17	89
PKHD1	5314	hgsc.bcm.edu;ucsc.edu	37	6	51897876	51897876	+	Missense_Mutation	SNP	A	A	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	ACTGGATTTAAGGAAGAGACA	0.383	6	56
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	136710581	136710581	+	Nonsense_Mutation	SNP	T	T	A			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	AACCTCTTCTTCCGCTCTTCC	0.542	25	135
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	152651648	152651648	+	Silent	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	CCCCAAGGCCCGCCACCTCGT	0.552	11	60
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	40102644	40102644	+	Missense_Mutation	SNP	A	A	G			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	CGAACTCTTCACTAAAAAACC	0.333	14	73
POM121L12	285877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	53103839	53103839	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	ACAGAGAgcccgccccgcagg	0.721	11	47
VDAC3	7419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	42259491	42259491	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	AATAATTTCGCCCTGGGTTAC	0.463	9	57
GSDMD	79792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144642132	144642132	+	Missense_Mutation	SNP	C	C	T			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	GACTCTGCTCCATGAGAGGTG	0.537	9	55
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	19786146	19786146	+	Missense_Mutation	SNP	C	C	G			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	AGACACATCTCGAAAGAGCGG	0.393	10	86
EXTL1	2134	broad.mit.edu;ucsc.edu	37	1	26360306	26360306	+	Silent	SNP	C	C	T	rs137944707	byFrequency	TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	AGAGGACCAACGAATTCTCCA	0.597	17	78
SPRYD3	84926	broad.mit.edu;ucsc.edu	37	12	53468957	53468957	+	Missense_Mutation	SNP	A	A	C			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	CTGAGGGACCAGCCCCACAGC	0.562	27	173
LZTR1	8216	broad.mit.edu;ucsc.edu	37	22	21347144	21347144	+	Missense_Mutation	SNP	G	G	A			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	TACATCTTCGGGGGCACGGTG	0.652	3	12
GSDMD	79792	broad.mit.edu;ucsc.edu	37	8	144645068	144645068	+	Silent	SNP	C	C	A			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	GCCAGGAGCCCCACTAGCCTG	0.667	5	30
BMPR1B	658	broad.mit.edu;hgsc.bcm.edu	37	4	96046194	96046194	+	Frame_Shift_Del	DEL	C	C	-			TCGA-HW-A5KK-01A-11D-A27K-08	TCGA-HW-A5KK-10A-01D-A27N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	90b22eb7-4e33-40b3-876c-70db5f2803d1	255ac70b-b68b-4384-be0e-057217146e1e	ATGAAACTTACATTCCTCCTG	0.408	15	50
