Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	24832988	24832988	+	Nonsense_Mutation	SNP	A	A	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TAAAACAGGGAAGAAGACTTT	0.463	13	122
AGAP5	729092	hgsc.bcm.edu;broad.mit.edu	37	10	75457306	75457306	+	Nonsense_Mutation	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GGCATCTCCTGGTCACGAATG	0.592	15	197
HELLS	3070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	96352241	96352241	+	Silent	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GGCTTGATGGGTCCATGTCTT	0.343	12	44
SLIT1	6585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	98764460	98764460	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CTGTAGATGGCAGAGCTGGGG	0.602	15	65
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	53877509	53877509	+	Splice_Site	SNP	T	T	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	AGGGCGTGTCTGCAACGGGCA	0.507	8	64
SMUG1	23583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	54577582	54577582	+	Missense_Mutation	SNP	G	G	A	rs149806805	byFrequency	TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CACAGGCTCCGAAAACTGCAG	0.597	6	55
TBX5	6910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	114793348	114793348	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TAGCTATTGTCGCTCCACTCT	0.517	8	56
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	31359319	31359319	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GGAGCAATTCCTATAGCACAA	0.453	50	74
SPPL2A	84888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	51017471	51017471	+	Missense_Mutation	SNP	C	C	G			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GAGGCACACACTCATTACTGA	0.313	52	120
TPM1	7168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	63336271	63336271	+	Missense_Mutation	SNP	G	G	A	rs104894505		TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CAAGGGCACCGAAGATGAACT	0.562	9	25
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	73428355	73428355	+	Missense_Mutation	SNP	G	G	C			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CTCAAGCAGAGCTTACAGTGC	0.373	17	32
SMAD2	4087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	45422914	45422914	+	Missense_Mutation	SNP	T	T	C			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	ACACATTTAGTATTACAGTTT	0.368	9	86
DAPK3	1613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	3964722	3964722	+	Silent	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CCTCCGTCAGCGACTCCTTCT	0.592	17	133
C3	718	hgsc.bcm.edu;broad.mit.edu	37	19	6718386	6718386	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GAACTTGTTGCGCCCCTTTTC	0.607	10	148
ZNF878	729747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	12154973	12154973	+	Nonsense_Mutation	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GTGTGAGTTCGTATGTGCTTT	0.433	13	34
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	15299837	15299837	+	Silent	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CTATGCGGTCGAGGCACGTGG	0.667	9	32
TEAD2	8463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	49845721	49845721	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TTTTCCAGGACGCTGTTCATC	0.572	27	35
U2AF2	11338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56175034	56175034	+	Missense_Mutation	SNP	G	G	C			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TCCAGGGCCAGTCACTAAAGA	0.567	10	106
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu	37	1	171511013	171511013	+	Missense_Mutation	SNP	C	C	G			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GGCTCAAGAACCAGTTAATAC	0.428	5	61
BPIFB3	359710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	31659936	31659936	+	Silent	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	AATGGCTCAGCCATGTGGTCG	0.532	15	87
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu	37	21	46909433	46909433	+	Missense_Mutation	SNP	A	A	G			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GCCGGGGGCGAAGGTAAGCGC	0.706	10	12
PARVB	29780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	44489821	44489821	+	Silent	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GTGACCTGCAGGAAGAAGGCA	0.547	49	104
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179634978	179634978	+	Missense_Mutation	SNP	C	C	G			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	ATGGGAAACACTAACTTCAAA	0.408	8	95
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	ATAAGCATGACGACCTATGAT	0.393	20	65
NGEF	25791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	233759484	233759484	+	Missense_Mutation	SNP	A	A	G			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GACAGCCAGCACGTCCAGGAC	0.602	31	82
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	58097875	58097875	+	Splice_Site	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TATCTTTCCAGGTGTGGAAAA	0.522	83	137
CRYBG3	131544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	97596597	97596597	+	Nonsense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CCCTGATGACCAGGAGAGCGT	0.468	12	22
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	71508741	71508741	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GAATCAGAAACTAATCAGTCA	0.413	32	63
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	164050323	164050323	+	Missense_Mutation	SNP	T	T	C			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TGAAGTCTCCTGAGATACCAT	0.458	10	50
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	187521295	187521295	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CGGATGTGGCCACCAAAAAAC	0.483	6	46
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	179192669	179192669	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GAAGCAGGAGCCTGTCGAAGA	0.517	5	46
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	32166813	32166813	+	Silent	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CATGCTCTCGGCGTCGACGCC	0.677	32	46
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu	37	6	32190325	32190325	+	Silent	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GTGGGCGGCCCGAGGCCTGGA	0.647	8	69
PNPLA1	285848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	36262065	36262065	+	Silent	SNP	C	C	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	ACATCTGTCCCCGGGACTGCC	0.607	24	138
PPP2R5D	5528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	42974286	42974286	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	AATAGCACGCCGCCCCCCACG	0.622	76	130
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	43251409	43251409	+	Silent	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GGGCCCGAGCGCCCCTGGAGA	0.697	26	32
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	87943087	87943087	+	Missense_Mutation	SNP	A	A	G			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GTTGGATATGAGAATTAAACA	0.308	9	22
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	92972658	92972658	+	Missense_Mutation	SNP	C	C	G			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TTCTCCCAGTCTTTGTGCTGG	0.567	10	40
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	144995732	144995732	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TCCTTCACAGCCTCGTTGACG	0.687	30	44
GNE	10020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	36249251	36249251	+	Silent	SNP	G	G	A	rs147290887		TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	ACTCAGGTTCGGTTTTAATGC	0.408	9	65
ALDH1A1	216	hgsc.bcm.edu;ucsc.edu	37	9	75520933	75520933	+	Silent	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CACTTACCACGCCATAGCAAT	0.348	6	37
FPGS	2356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	130570869	130570869	+	Silent	SNP	C	C	G			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TGCTGGAGGCCCTCGAGGAAG	0.687	20	29
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	139412597	139412597	+	Missense_Mutation	SNP	C	C	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	ACCCAGCGAGCACTCATCCAC	0.672	9	10
FTSJ1	24140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	48339829	48339829	+	Missense_Mutation	SNP	G	G	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CCGAGGCCGGGATGTGACGCT	0.602	30	11
LHFPL1	340596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	111914414	111914414	+	Missense_Mutation	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CTGGCATAGCGCCCACATTCT	0.592	36	69
NSDHL	50814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	152037637	152037637	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GCAGAGCTTTCGCCACCTGCG	0.552	11	29
ABI3BP	25890	broad.mit.edu;ucsc.edu	37	3	100523693	100523693	+	Missense_Mutation	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GCAGTAACACGCTGGGGCACC	0.398	13	40
CRIP3	401262	broad.mit.edu;ucsc.edu	37	6	43275627	43275627	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GTATGGCCTCCCATTGTGCTG	0.607	4	35
KPRP	448834	broad.mit.edu;ucsc.edu	37	1	152733157	152733157	+	Missense_Mutation	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CTCCTGGGGCGCCTCCTGCCC	0.662	13	84
TTC12	54970	broad.mit.edu;ucsc.edu	37	11	113215006	113215006	+	Missense_Mutation	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GAAAACCAGCGTGTGCTAGTG	0.532	73	126
THSD7B	80731	broad.mit.edu;ucsc.edu	37	2	137814593	137814593	+	Nonsense_Mutation	SNP	G	G	A			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GTTGGACCATGGAGTAAATGC	0.413	39	59
DIXDC1	85458	broad.mit.edu;ucsc.edu	37	11	111835363	111835363	+	Missense_Mutation	SNP	C	C	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	ACAAGATCTCCGGGATGGGGT	0.517	7	9
HFM1	164045	broad.mit.edu;hgsc.bcm.edu	37	1	91781979	91781980	+	Frame_Shift_Ins	INS	-	-	T			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	TGTCTCTTCTATTTTTTTAAAG	0.292	29	20
KIAA1147	57189	broad.mit.edu;hgsc.bcm.edu	37	7	141362626	141362626	+	Frame_Shift_Del	DEL	T	T	-			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	GTCTGAAATATCCGGTTGTTT	0.502	10	2
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42797750	42797750	+	Frame_Shift_Del	DEL	A	A	-			TCGA-IK-8125-01A-11D-2253-08	TCGA-IK-8125-10A-01D-2253-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	1a94ffa8-b014-46c2-b0fc-e2ec18aa0d03	572ef2b3-0fb8-450b-9850-765fa3c1e051	CCAGGCCAGCAAATTCCCCAG	0.637	25	21
