Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	55587452	55587452	+	Nonsense_Mutation	SNP	T	T	G			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	TCCTTTTTATTAGCTGTGATG	0.443	71	118
PDE2A	5138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	72292936	72292936	+	Missense_Mutation	SNP	C	C	A			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CAGGGTCGGGCAGTCAATTTT	0.577	10	79
ANO2	57101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	5708718	5708718	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CCACTGCTCTGGATGTTTCGA	0.473	25	129
SLCO1B3	28234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	21028269	21028269	+	Silent	SNP	T	T	C			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CCATACCATTTTTTTTCTTGC	0.358	32	65
KRT73	319101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	53010008	53010008	+	Missense_Mutation	SNP	C	C	G			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	TCCAGCCTCACCCTGTCCCCA	0.612	27	130
ITGA5	3678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	54795993	54795993	+	Missense_Mutation	SNP	C	C	G			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CCTGAGTACTCAGCCTCTGGA	0.587	20	62
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	70949900	70949900	+	Silent	SNP	G	G	A			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	TCTGAGGCCGGCAATGCAGGT	0.458	9	29
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	58831983	58831983	+	Missense_Mutation	SNP	G	G	C			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GGTACCTGTAGTATAATTGTA	0.378	27	50
FLYWCH1	84256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	2983273	2983273	+	Silent	SNP	G	G	A			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	ACGGCTGCCGGAGCCGGGCCA	0.667	6	24
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	A	rs28934576	by1000genomes	TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GGCACAAACACGCACCTCAAA	0.542	28	3
KRT15	3866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	39673186	39673186	+	Silent	SNP	G	G	A			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CAGCCTCAACGCCCTGGCGCA	0.612	24	118
TMC8	147138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	76134132	76134132	+	Missense_Mutation	SNP	C	C	T	rs149327841	by1000genomes	TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CTGGCTGGAACGGGAGGAGTT	0.647	17	130
RNF126	55658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	651708	651708	+	Missense_Mutation	SNP	G	G	C			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CGGGACGGATGGTCTCTCTCC	0.721	14	24
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	21216300	21216300	+	Silent	SNP	T	T	C			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	TAGAATTTTCTCTGGAGGAGT	0.438	21	113
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	9389339	9389339	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	TGGCTACTTGAAGACACATGC	0.373	6	15
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	33670458	33670458	+	Silent	SNP	G	G	A			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CAGCAAAGCCGTAGCGGCGGG	0.542	29	165
PRR5	55615	hgsc.bcm.edu;ucsc.edu	37	22	45132730	45132730	+	Missense_Mutation	SNP	C	C	T			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	AGCTACAACACGCCTCTGCTG	0.692	33	127
DQX1	165545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	74750021	74750021	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	TGGCTCTGCAATCTGTCTCCT	0.522	53	83
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499		TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	TAAGCATGACGACCTATGATG	0.398	22	48
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	160122126	160122126	+	Missense_Mutation	SNP	A	A	C			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GAAGGGGATGATTATGAAGTC	0.338	6	19
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	23213883	23213883	+	Missense_Mutation	SNP	C	C	G			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GTTGTCGATACTTGTGGAGCA	0.408	17	72
ZNF117	51351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	64441776	64441776	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	TAAATGTTTAGCTACCATCTC	0.423	21	120
ZKSCAN1	7586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	99631511	99631511	+	Silent	SNP	T	T	C			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	AGAAACCTTATGAATGTAATG	0.502	106	164
GATA4	2626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	11606556	11606556	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CAAGATGAACGGCATCAACCG	0.637	12	73
C8orf47	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	99102249	99102249	+	Missense_Mutation	SNP	G	G	A			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GAGGACCAACGCATTGAAGGT	0.483	24	65
PALM2-AKAP2	445815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	112918731	112918731	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	ATGGAAGACTATGAGACACAC	0.537	15	78
DHRSX	207063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	2161263	2161263	+	Missense_Mutation	SNP	T	T	C			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GTGGGGTGAGTAGCAGGCACT	0.642	8	31
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	83116196	83116196	+	Silent	SNP	T	T	C			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GGGAAATGTCTCTTCCAAGGT	0.313	10	41
BTK	695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	100615678	100615678	+	Silent	SNP	C	C	T			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GGGCCACAACCTTTTTCAGCT	0.448	17	115
MUM1L1	139221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	105449981	105449981	+	Missense_Mutation	SNP	T	T	C			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GGAAACAAAGTCATTACAAAA	0.383	12	14
IFT52	51098	broad.mit.edu;ucsc.edu	37	20	42264576	42264576	+	Missense_Mutation	SNP	C	C	G			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GGCTCACGAGCAGCTAAATGT	0.488	8	58
PEX5	5830	broad.mit.edu;ucsc.edu	37	12	7362771	7362771	+	Silent	SNP	C	C	T	rs148914171	byFrequency	TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	GGGCAGCCGACGCGCGGGATC	0.627	16	118
PRDM11	56981	broad.mit.edu;ucsc.edu	37	11	45117366	45117366	+	Missense_Mutation	SNP	A	A	G			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	aatgttgaagatggcagagcc	0.507	27	53
PKP3	11187	broad.mit.edu;ucsc.edu	37	11	397651	397651	+	Missense_Mutation	SNP	G	G	A	rs148819261		TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CGATGCAGCCGCCAAGAAGCA	0.637	8	57
KRTAP10-7	386675	broad.mit.edu;ucsc.edu	37	21	46021254	46021254	+	Missense_Mutation	SNP	G	G	T			TCGA-P5-A5F4-01A-11D-A289-08	TCGA-P5-A5F4-10A-01D-A289-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	58cdd54d-f0d7-4f7a-8467-d83fec67b803	d867db6f-d0aa-468c-8f1e-6397da80ea18	CGTCTGCTGTGTGCCCACCTG	0.652	44	222
