Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	ref_context	gc_content	t_alt_count	t_ref_count
CNNM1	26507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	101124220	101124220	+	Missense_Mutation	SNP	A	A	G			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	CGCTTTGAAAATGGAGCCTTT	0.423	9	17
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	109616926	109616926	+	Missense_Mutation	SNP	C	C	G			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	GCCCATCTTTCTCATGAAGCT	0.562	17	31
ACSF3	197322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	89180794	89180794	+	Missense_Mutation	SNP	A	A	G			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	GTGCTGGAGAAGTGGAAGAAC	0.647	33	104
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	38188968	38188968	+	Missense_Mutation	SNP	G	G	T			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	TGAGCCCCACGAAGCAAGCTT	0.577	23	24
ARRDC5	645432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	4891396	4891396	+	Missense_Mutation	SNP	G	G	C			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	CCCTCGTACTGTATGTGGGCA	0.587	13	39
PPP1R13L	10848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	45895364	45895364	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	CACAGCAGGGGCCTGCTCCAT	0.687	12	59
EXTL1	2134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	26349229	26349229	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	TCCCTTCTCCGCCTGGCATTG	0.657	31	11
G0S2	50486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	209849305	209849305	+	Silent	SNP	C	C	T			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	CGGTCCTCGGCGGCCGGGCCC	0.667	13	28
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	237957283	237957283	+	Silent	SNP	C	C	T			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	GGGATAGACTCGTAATCAACA	0.363	16	21
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	60888747	60888747	+	Silent	SNP	G	G	A			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	AGACGAAGTCGTCTGGCCGCA	0.662	76	96
FZD7	8324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	202900715	202900715	+	Missense_Mutation	SNP	C	C	T			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	GTCCCTCTTCCGTATCCGCAC	0.612	41	103
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	209113112	209113112	+	Missense_Mutation	SNP	C	C	T	rs121913500		TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	ATAAGCATGACGACCTATGAT	0.393	25	39
ECT2	1894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	172501694	172501694	+	Missense_Mutation	SNP	C	C	T			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	TCATGCTTTTCTCAAGGTAAT	0.274	18	23
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	146044497	146044497	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	ATGGCAGCTCGAGTTGTCAAA	0.383	41	33
PHF3	23469	hgsc.bcm.edu;broad.mit.edu	37	6	64423124	64423124	+	Silent	SNP	C	C	G			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	GGTATATAGGCCCGCAGAATT	0.507	12	155
SLC26A4	5172	hgsc.bcm.edu;broad.mit.edu	37	7	107314667	107314667	+	Silent	SNP	C	C	T			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	TGGCCCCCGACGAACACTTTC	0.433	5	85
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	113194246	113194246	+	Missense_Mutation	SNP	A	A	G			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	GAACATATGTAGGATCCATCT	0.378	29	75
XPNPEP2	7512	broad.mit.edu;ucsc.edu	37	X	128879232	128879232	+	Silent	SNP	A	A	T			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	CAGGCTTTACAGGGTCTGCAG	0.488	3	31
TACR3	6870	broad.mit.edu;ucsc.edu	37	4	104510918	104510918	+	Missense_Mutation	SNP	G	G	A			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	ATTCCTGCGAGAGCAGCCATT	0.478	70	107
CREB3	10488	broad.mit.edu;ucsc.edu	37	9	35736644	35736644	+	Missense_Mutation	SNP	A	A	C			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	CTCCCCCTGCAGGCAAATCTC	0.567	75	199
ITSN1	6453	broad.mit.edu;ucsc.edu	37	21	35183494	35183494	+	Silent	SNP	G	G	A			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	AGCCCTCCACGACCCCTAATA	0.547	40	105
SLC1A7	6512	broad.mit.edu;hgsc.bcm.edu	37	1	53553683	53553684	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	CCGCAGGCTCAGACATTGGTCT	0.663	18	20
CTNNB1	1499	broad.mit.edu;hgsc.bcm.edu	37	3	41275294	41275294	+	Frame_Shift_Del	DEL	T	T	-			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	GCAGTTCGCCTTCACTATGGA	0.493	105	164
SGK223	157285	broad.mit.edu;hgsc.bcm.edu	37	8	8234817	8234819	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	GCAGGTTCCTTCATGAGGGAGCA	0.68	15	26
KAT6B	23522	broad.mit.edu;hgsc.bcm.edu	37	10	76784946	76784949	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	GGAAGAAAAGACAAACAGAGGAAG	0.451	14	37
RBBP6	5930	broad.mit.edu;hgsc.bcm.edu	37	16	24567746	24567747	+	Frame_Shift_Ins	INS	-	-	A			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	CACTGGAAAATATGCAATACCA	0.401	14	50
ZACN	353174	broad.mit.edu;hgsc.bcm.edu	37	17	74075804	74075805	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	ATACACAATGTCCTCCATGCTG	0.569	21	55
CIC	23152	broad.mit.edu;hgsc.bcm.edu	37	19	42797776	42797777	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	CTTCAGACTGGCGCGTCCCTGG	0.649	10	7
CIC	23152	broad.mit.edu	37	19	42798989	42798990	+	Frame_Shift_Ins	INS	-	-	A	rs148444899		TCGA-QH-A65Z-01A-11D-A29Q-08	TCGA-QH-A65Z-10A-01D-A29Q-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d0a802c3-cb5f-48d0-b06f-8a526841caf2	d2f44aee-6bf6-4683-a741-75833c96b28c	AGGCCACAGCCGCCTTCCAGGC	0.574	8	71
