Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MMEL1	79258	broad.mit.edu	37	1	2524404	2524404	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:2524404G>T	uc001ajy.2	-	20	2083	c.1869C>A	c.(1867-1869)GGC>GGA	p.G623G	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	623	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		CGAAGTTCCGGCCTGGGCAGG	0.632			NA											9	66					0.00185496	0.00224548	0.001855	1	0
PHF13	148479	broad.mit.edu	37	1	6680330	6680331	+	Nonsense_Mutation	DNP	GG	GG	TT			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:6680330_6680331GG>TT	uc001aob.3	+	3	980_981	c.609_610GG>TT	c.(607-612)CAGGGA>CATTGA	p.203_204QG>H*		NM_153812	NP_722519	Q86YI8	PHF13_HUMAN	PHD finger protein 13	203_204					cell division|chromatin modification|mitotic chromosome condensation	nucleoplasm	chromatin binding|methylated histone residue binding|zinc ion binding				0	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;1.46e-33)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.19e-07)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|STAD - Stomach adenocarcinoma(132;0.0165)|READ - Rectum adenocarcinoma(331;0.0642)		TCGTCCGGCAGGGAAAGCAGGT	0.525			NA											4	43					0	0	0.004672	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001343	13001343	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:13001343T>C	uc001auq.2	-	3	426	c.340A>G	c.(340-342)ATG>GTG	p.M114V	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	114											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GACCAAACCATCCAGAAGTTC	0.483			NA											27	385					0	0	0.00361	0	0
HSPB7	27129	broad.mit.edu	37	1	16342123	16342123	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:16342123C>A	uc001axo.2	-	3	1292	c.465G>T	c.(463-465)CCG>CCT	p.P155P	HSPB7_uc001axp.2_Silent_p.P238P|HSPB7_uc001axq.2_Silent_p.P247P|HSPB7_uc001axr.2_Silent_p.P248P|HSPB7_uc001axs.2_Silent_p.P230P	NM_014424	NP_055239	Q9UBY9	HSPB7_HUMAN	cardiovascular heat shock protein	155					regulation of heart contraction|response to heat|response to unfolded protein	Cajal body	protein C-terminus binding				0		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.21e-08)|COAD - Colon adenocarcinoma(227;5.5e-06)|BRCA - Breast invasive adenocarcinoma(304;9.08e-05)|Kidney(64;0.000162)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00656)|READ - Rectum adenocarcinoma(331;0.0649)		GTTCTGTATGCGGGTGACGCC	0.652			NA											19	32					8.34094e-07	1.17797e-06	0.008871	1	0
EPHA8	2046	broad.mit.edu	37	1	22920043	22920043	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:22920043C>A	uc001bfx.1	+	7	1592	c.1467C>A	c.(1465-1467)ACC>ACA	p.T489T		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	489	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GCTACTCCACCCTCAAGGCCG	0.697			NA											7	23					2.7689e-08	4.25916e-08	0.001984	1	0
RCAN3	11123	broad.mit.edu	37	1	24840900	24840900	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:24840900A>T	uc001bjj.2	+	2	351	c.38A>T	c.(37-39)CAG>CTG	p.Q13L	RCAN3_uc009vrd.2_Missense_Mutation_p.Q13L|RCAN3_uc009vre.2_Missense_Mutation_p.Q13L|RCAN3_uc009vrf.2_Missense_Mutation_p.Q13L|RCAN3_uc009vrg.2_Missense_Mutation_p.Q13L	NM_013441	NP_038469	Q9UKA8	RCAN3_HUMAN	Down syndrome critical region gene 1-like 2	13					anatomical structure morphogenesis|calcium-mediated signaling		nucleotide binding|RNA binding|troponin I binding				0		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000946)|all_lung(284;0.00125)|Ovarian(437;0.00473)|Breast(348;0.0148)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.19)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0427)|OV - Ovarian serous cystadenocarcinoma(117;1.13e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;0.000923)|BRCA - Breast invasive adenocarcinoma(304;0.0018)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.00493)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.14)		AATGATAGCCAGTCAGATCTG	0.428			NA											12	76					0	0	0.00245	0	0
LAPTM5	7805	broad.mit.edu	37	1	31230519	31230519	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:31230519G>T	uc001bsc.2	-	1	165	c.74C>A	c.(73-75)GCC>GAC	p.A25D		NM_006762	NP_006753	Q13571	LAPM5_HUMAN	lysosomal protein transmembrane 5	25	Helical; (Potential).				transport	integral to plasma membrane|lysosomal membrane					0		Colorectal(325;0.0199)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0966)|Medulloblastoma(700;0.151)|Ovarian(437;0.192)		STAD - Stomach adenocarcinoma(196;0.0196)|READ - Rectum adenocarcinoma(331;0.0649)		ATGGTAGATGGCCAGGGCGGT	0.632			NA											11	59					0.00829132	0.00981546	0.008291	1	0
PODN	127435	broad.mit.edu	37	1	53542969	53542969	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:53542969G>T	uc001cuv.2	+	6	840	c.833G>T	c.(832-834)CGC>CTC	p.R278L	PODN_uc001cuw.2_Missense_Mutation_p.R259L|PODN_uc010onr.1_Missense_Mutation_p.R259L|PODN_uc010ons.1_Intron	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	230	LRR 6.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding	p.R278H(1)		ovary(1)|pancreas(1)	2						AACTTCCTGCGCCACGTGCCC	0.637			NA											27	147					8.24728e-16	1.60623e-15	0.004656	1	0
C1orf87	127795	broad.mit.edu	37	1	60505798	60505798	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:60505798G>A	uc001czs.1	-	5	630	c.538C>T	c.(538-540)CTG>TTG	p.L180L		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	180							calcium ion binding			ovary(1)|breast(1)	2						CTTCTGACCAGGGCAAGAAGA	0.433	NSCLC(75;811 1386 4923 13371 51772)		NA											36	123					0	0	0.005524	0	0
INADL	10207	broad.mit.edu	37	1	62626589	62626589	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:62626589G>T	uc001dab.2	+	43	5502	c.5388G>T	c.(5386-5388)CTG>CTT	p.L1796L	INADL_uc001dac.2_RNA|INADL_uc009wag.2_Intron	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1796					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GGGAGCAGCTGCAGATGACGG	0.408			NA											16	66					1.67942e-08	2.59986e-08	0.006122	1	0
LPHN2	23266	broad.mit.edu	37	1	82432281	82432281	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:82432281G>T	uc001dit.3	+	12	2467	c.2286G>T	c.(2284-2286)CTG>CTT	p.L762L	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Silent_p.L762L|LPHN2_uc001div.2_Silent_p.L762L|LPHN2_uc009wcd.2_Silent_p.L762L|LPHN2_uc001diw.2_Silent_p.L346L	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	775	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TTTTTACCCTGCCACACATTG	0.418			NA											24	141					2.32416e-17	4.73657e-17	0.002299	1	0
BTBD8	284697	broad.mit.edu	37	1	92554451	92554451	+	Nonsense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:92554451C>T	uc001doo.2	+	2	613	c.346C>T	c.(346-348)CAG>TAG	p.Q116*	BTBD8_uc010otc.1_RNA	NM_183242	NP_899065	Q5XKL5	BTBD8_HUMAN	BTB (POZ) domain containing 8	116	BTB 1.					nucleus				ovary(1)	1		all_lung(203;0.0484)|Lung NSC(277;0.126)|Glioma(108;0.222)		all cancers(265;0.0153)|Epithelial(280;0.0982)		AACGTTTTTACAGTAAGTGCT	0.274			NA											7	49					0	0	0.001984	0	0
CHI3L2	1117	broad.mit.edu	37	1	111773424	111773424	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:111773424G>A	uc001eam.2	+	3	202	c.131G>A	c.(130-132)GGA>GAA	p.G44E	CHI3L2_uc001ean.2_Missense_Mutation_p.G34E|CHI3L2_uc001eao.2_5'UTR|CHI3L2_uc009wga.2_5'UTR	NM_004000	NP_003991	Q15782	CH3L2_HUMAN	chitinase 3-like 2 isoform a	44					chitin catabolic process	extracellular space	cation binding|chitinase activity			central_nervous_system(1)	1		all_cancers(81;1.89e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0171)|Colorectal(144;0.0387)|all cancers(265;0.0464)|LUSC - Lung squamous cell carcinoma(189;0.0872)|Epithelial(280;0.0994)|COAD - Colon adenocarcinoma(174;0.141)		CAGGAACCAGGAAAATTCACC	0.478			NA											13	52					0	0	0.001855	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145473875	145473875	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:145473875T>A	uc001enq.1	+	4	1840	c.547T>A	c.(547-549)TCG>ACG	p.S183T	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	183											0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GTTCTGCACGTCGCCTTCGGA	0.612			NA											21	99					0	0	0.001882	0	0
FLG	2312	broad.mit.edu	37	1	152283761	152283761	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:152283761G>T	uc001ezu.1	-	3	3637	c.3601C>A	c.(3601-3603)CAG>AAG	p.Q1201K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1201	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GACCTTCCCTGGGATGTGGTG	0.567			NA							Ichthyosis				146	550					1.25085e-53	2.90463e-53	0.00361	1	0
LCE2C	353140	broad.mit.edu	37	1	152648743	152648743	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:152648743C>A	uc001fah.2	+	2	307	c.252C>A	c.(250-252)CGC>CGA	p.R84R		NM_178429	NP_848516	Q5TA81	LCE2C_HUMAN	late cornified envelope 2C	84	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCACCGGCGCCGGCACCAGA	0.682			NA											28	95					7.41945e-09	1.15228e-08	0.005443	1	0
IL6R	3570	broad.mit.edu	37	1	154422457	154422457	+	Splice_Site	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:154422457G>A	uc001fez.1	+	8	1503	c.1066_splice	c.e8+1	p.V356_splice	IL6R_uc001ffa.1_Splice_Site_p.G356_splice	NM_000565	NP_000556	P08887	IL6RA_HUMAN	interleukin 6 receptor isoform 1 precursor						acute-phase response|ciliary neurotrophic factor-mediated signaling pathway|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|endocrine pancreas development|hepatic immune response|negative regulation of collagen biosynthetic process|negative regulation of interleukin-8 production|positive regulation of activation of Janus kinase activity|positive regulation of anti-apoptosis|positive regulation of chemokine production|positive regulation of chemokine production|positive regulation of interleukin-6 production|positive regulation of leukocyte chemotaxis|positive regulation of MAPKKK cascade|positive regulation of osteoblast differentiation|positive regulation of smooth muscle cell proliferation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of apoptosis	apical plasma membrane|basolateral plasma membrane|extracellular space|interleukin-6 receptor complex	ciliary neurotrophic factor binding|enzyme binding|protein homodimerization activity			ovary(3)|breast(1)	4	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			AGCCTCCCAGGTAAGGACTGG	0.433			NA											4	83					0	0	0.000248	0	0
RXRG	6258	broad.mit.edu	37	1	165370562	165370562	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:165370562C>A	uc001gda.2	-	10	1630	c.1330G>T	c.(1330-1332)GGG>TGG	p.G444W		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	444	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	GGGGTGTCCCCGATGAGCTTG	0.602			NA											41	114					4.01765e-15	7.63987e-15	0.002222	1	0
F5	2153	broad.mit.edu	37	1	169510755	169510755	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:169510755G>T	uc001ggg.1	-	13	3718	c.3573C>A	c.(3571-3573)AGC>AGA	p.S1191R		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1191	2-1.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GGGTCACCTGGCTGAGGTCTG	0.512			NA											102	313					8.27256e-43	1.91179e-42	0.00361	1	0
TNN	63923	broad.mit.edu	37	1	175096160	175096160	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:175096160C>A	uc001gkl.1	+	13	3097	c.2984C>A	c.(2983-2985)CCC>CAC	p.P995H		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	995	Fibronectin type-III 9.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		ACCTGGACGCCCCCCTCTGCT	0.502			NA											13	124					7.03913e-09	1.09674e-08	0.001368	1	0
ASTN1	460	broad.mit.edu	37	1	176915238	176915238	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:176915238C>A	uc001glc.2	-	13	2285	c.2073G>T	c.(2071-2073)AAG>AAT	p.K691N	ASTN1_uc001glb.1_Missense_Mutation_p.K691N|ASTN1_uc001gld.1_Missense_Mutation_p.K691N|ASTN1_uc009wwx.1_Missense_Mutation_p.K691N	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	699	EGF-like 3.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CCACACCAAGCTTGTAGTCCT	0.517			NA											20	97					0.00121646	0.00148372	0.008871	1	0
FAM5C	339479	broad.mit.edu	37	1	190068080	190068080	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:190068080G>C	uc001gse.1	-	8	1601	c.1369C>G	c.(1369-1371)CGC>GGC	p.R457G	FAM5C_uc010pot.1_Missense_Mutation_p.R355G	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	457						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CAGCGGGTGCGGTTGTCTGGT	0.622			NA											24	113					0	0	0.002299	0	0
CR1	1378	broad.mit.edu	37	1	207739213	207739213	+	Silent	SNP	T	T	C	rs56229517		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:207739213T>C	uc001hfy.2	+	16	2687	c.2547T>C	c.(2545-2547)TAT>TAC	p.Y849Y	CR1_uc009xcl.1_Intron|CR1_uc001hfx.2_Silent_p.Y1299Y|CR1_uc009xck.1_Intron	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	849	Extracellular (Potential).|Sushi 13.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						CTGCTAGTTATTGTGTCTTGG	0.423			NA											13	166					0	0	0.001855	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220406195	220406195	+	Silent	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:220406195T>C	uc010puk.1	-	2	290	c.126A>G	c.(124-126)ACA>ACG	p.T42T	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_5'UTR|RAB3GAP2_uc010pum.1_Silent_p.T42T	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	42					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		CTTCCCAGTCTGTTGATTTAC	0.338			NA											13	94					0	0	0.001855	0	0
TAF1A	9015	broad.mit.edu	37	1	222736579	222736579	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:222736579C>A	uc009xdz.1	-	9	1210	c.1021G>T	c.(1021-1023)GGA>TGA	p.G341*	TAF1A_uc009xdy.1_Nonsense_Mutation_p.G32*|TAF1A_uc001hni.1_Nonsense_Mutation_p.G227*|TAF1A_uc001hnj.2_Nonsense_Mutation_p.G341*|TAF1A_uc001hnk.2_Nonsense_Mutation_p.G227*	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	341					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		TTAGTGCATCCGGCAAAATCT	0.333			NA											12	58					1.08611e-07	1.62412e-07	0.000978	1	0
RYR2	6262	broad.mit.edu	37	1	237656342	237656342	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:237656342G>T	uc001hyl.1	+	19	2036	c.1916G>T	c.(1915-1917)GGA>GTA	p.G639V		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	639	Cytoplasmic (By similarity).|B30.2/SPRY 1.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTCCTACCAGGAAGAGACTTG	0.438			NA											8	31					0.00307968	0.00370021	0.00308	1	0
OR2M7	391196	broad.mit.edu	37	1	248486947	248486947	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:248486947G>T	uc010pzk.1	-	1	924	c.924C>A	c.(922-924)GGC>GGA	p.G308G		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTCCAGACTTGCCCTTTCCTA	0.378			NA											14	53					4.7546e-09	7.50482e-09	0.004007	1	0
OR2M7	391196	broad.mit.edu	37	1	248487446	248487446	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:248487446C>A	uc010pzk.1	-	1	425	c.425G>T	c.(424-426)GGA>GTA	p.G142V		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGTCATAAGTCCACAAATTTT	0.478			NA											74	297					1.8615e-32	4.24106e-32	0.00361	1	0
ARMC3	219681	broad.mit.edu	37	10	23244787	23244787	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:23244787C>A	uc001irm.3	+	4	301	c.218C>A	c.(217-219)ACT>AAT	p.T73N	ARMC3_uc010qcv.1_Missense_Mutation_p.T73N|ARMC3_uc010qcw.1_5'UTR|ARMC3_uc001irn.1_5'UTR	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	73	ARM 2.						binding				0						GAACCTTTAACTAAGCTACTC	0.348			NA											8	49					1.12685e-05	1.52456e-05	0.004482	1	0
ARMC3	219681	broad.mit.edu	37	10	23287230	23287230	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:23287230C>A	uc001irm.3	+	11	1412	c.1329C>A	c.(1327-1329)GCC>GCA	p.A443A	ARMC3_uc010qcv.1_Silent_p.A443A|ARMC3_uc010qcw.1_Silent_p.A180A	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	443	ARM 11.						binding				0						TCATGCATGCCATCATCAGCC	0.542			NA											5	16					0.000602214	0.000749664	0.000602	1	0
Unknown	0	broad.mit.edu	37	10	49218470	49218470	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:49218470C>T	uc001jgd.2	-	8	1828	c.1669G>A	c.(1669-1671)GCT>ACT	p.A557T	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;												NA						TCCTCATCAGCGGTGGCCCGC	0.617			NA											8	91					0	0	0.00308	0	0
HKDC1	80201	broad.mit.edu	37	10	71010090	71010090	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:71010090C>T	uc001jpf.3	+	11	1748	c.1615C>T	c.(1615-1617)CGG>TGG	p.R539W	HKDC1_uc010qje.1_Missense_Mutation_p.R402W	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	539					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						AACCAACTTCCGGGTCCTCCT	0.542			NA											22	208					0	0	0.001882	0	0
MYOF	26509	broad.mit.edu	37	10	95066741	95066741	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:95066741C>A	uc001kin.2	-	54	6288	c.6165G>T	c.(6163-6165)AAG>AAT	p.K2055N	MYOF_uc001kio.2_Missense_Mutation_p.K2042N|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	2055	Extracellular (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						GCTTTACAATCTTCATTGACA	0.308			NA											25	135					1.42536e-11	2.46755e-11	0.004656	1	0
MYOF	26509	broad.mit.edu	37	10	95126285	95126285	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:95126285T>C	uc001kin.2	-	26	2740	c.2617A>G	c.(2617-2619)AAA>GAA	p.K873E	MYOF_uc001kio.2_Missense_Mutation_p.K860E|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	873	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						GTACCCCATTTTCCAAACATG	0.348			NA											18	61					0	0	0.006122	0	0
TMEM20	159371	broad.mit.edu	37	10	95661109	95661109	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:95661109G>T	uc001kjg.1	+	3	1021	c.960G>T	c.(958-960)ATG>ATT	p.M320I	TMEM20_uc001kji.2_Intron|TMEM20_uc001kjf.1_Missense_Mutation_p.M319I|TMEM20_uc001kjh.2_Intron|TMEM20_uc010qnw.1_Missense_Mutation_p.M303I|TMEM20_uc001kjj.2_Intron	NM_001134658	NP_001128130	Q2M3R5	TMM20_HUMAN	transmembrane protein 20 isoform 1	320	Helical; (Potential).|DUF6 2.					integral to membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;3.46e-05)|Renal(717;0.018)|Ovarian(717;0.0228)|all_hematologic(284;0.189)		STAD - Stomach adenocarcinoma(243;0.00345)		TGAAGACAATGGATGTGGTCT	0.403			NA											8	76					1.12685e-05	1.52456e-05	0.004482	1	0
HELLS	3070	broad.mit.edu	37	10	96333850	96333850	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:96333850A>G	uc001kjt.2	+	8	716	c.611A>G	c.(610-612)AAG>AGG	p.K204R	HELLS_uc001kjs.2_Missense_Mutation_p.K188R|HELLS_uc009xul.2_Missense_Mutation_p.K204R|HELLS_uc009xum.2_Missense_Mutation_p.K204R|HELLS_uc009xun.2_Missense_Mutation_p.K80R|HELLS_uc009xuo.2_Missense_Mutation_p.K204R|HELLS_uc001kju.2_5'UTR|HELLS_uc009xup.2_RNA|HELLS_uc009xuq.2_Missense_Mutation_p.K66R|HELLS_uc009xur.2_RNA	NM_018063	NP_060533	Q9NRZ9	HELLS_HUMAN	helicase, lymphoid-specific	204					cell division|centromeric heterochromatin formation|lymphocyte proliferation|maintenance of DNA methylation|methylation-dependent chromatin silencing|mitosis|transcription, DNA-dependent	centromeric heterochromatin|nucleus	ATP binding|DNA binding|helicase activity			ovary(1)|kidney(1)	2		Colorectal(252;0.0429)		all cancers(201;2.13e-05)		CCAGTCCGGAAGTGTAATGGT	0.393			NA											32	170					0	0	0.002836	0	0
FAM45A	404636	broad.mit.edu	37	10	120877099	120877099	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:120877099T>A	uc001ldw.2	+	4	445	c.401T>A	c.(400-402)ATA>AAA	p.I134K	FAM45A_uc010qsv.1_Missense_Mutation_p.I126K|FAM45A_uc010qsw.1_Intron|FAM45A_uc010qsx.1_RNA|FAM45A_uc010qsy.1_Missense_Mutation_p.I61K|FAM45A_uc010qsz.1_Missense_Mutation_p.I23K	NM_207009	NP_996892	Q8TCE6	FA45A_HUMAN	hypothetical protein LOC404636	134										ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0293)		ACAAAGGGGATATGCCAGAGT	0.423			NA											26	137					0	0	0.004656	0	0
PAOX	196743	broad.mit.edu	37	10	135203244	135203244	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr10:135203244G>T	uc001lmv.2	+	6	1465	c.1385G>T	c.(1384-1386)GGC>GTC	p.G462V	PAOX_uc001lmw.2_Intron|PAOX_uc001lmx.2_Intron|PAOX_uc001lmy.2_Intron|PAOX_uc001lmz.2_RNA|PAOX_uc001lna.2_RNA|PAOX_uc001lnb.2_RNA|PAOX_uc001lnc.2_RNA	NM_152911	NP_690875	Q6QHF9	PAOX_HUMAN	polyamine oxidase isoform 1	600					polyamine biosynthetic process|xenobiotic metabolic process	peroxisomal matrix	polyamine oxidase activity				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;4.39e-07)|OV - Ovarian serous cystadenocarcinoma(35;1.21e-06)|Epithelial(32;1.94e-06)		GACGGCGCCGGCGCCCAGGTA	0.736			NA											4	30					0.000602214	0.000749664	0.000602	1	0
OR51E2	81285	broad.mit.edu	37	11	4703764	4703764	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:4703764G>A	uc001lzk.2	-	2	422	c.178C>T	c.(178-180)CTC>TTC	p.L60F		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		CAGAGAAAGAGGTACATCGGA	0.507			NA											18	73					0	0	0.00499	0	0
CNGA4	1262	broad.mit.edu	37	11	6260974	6260974	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:6260974G>T	uc001mco.2	+	3	332	c.225G>T	c.(223-225)ACG>ACT	p.T75T	CNGA4_uc010raa.1_Silent_p.T35T|CNGA4_uc001mcn.2_Silent_p.T35T	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	75	Helical; Name=H2; (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGGACTACACGAGTGACCTGC	0.537			NA											6	20					2.0095e-06	2.79708e-06	0.001984	1	0
NLRP10	338322	broad.mit.edu	37	11	7981773	7981773	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:7981773G>T	uc001mfv.1	-	2	1403	c.1386C>A	c.(1384-1386)TAC>TAA	p.Y462*		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	462	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GGCGGAAGCTGTAGAACTTCT	0.507			NA											24	146					3.7963e-18	7.86959e-18	0.00333	1	0
IPO7	10527	broad.mit.edu	37	11	9438673	9438673	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:9438673T>C	uc001mho.2	+	6	846	c.704T>C	c.(703-705)GTT>GCT	p.V235A		NM_006391	NP_006382	O95373	IPO7_HUMAN	importin 7	235					interspecies interaction between organisms|signal transduction	Golgi apparatus|nuclear pore|soluble fraction	protein transporter activity|Ran GTPase binding|small GTPase regulator activity			lung(1)|breast(1)	2				all cancers(16;8.29e-09)|Epithelial(150;4.76e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0217)		TTAAAGACTGTTGTGAACAGG	0.294			NA											18	87					0	0	0.001523	0	0
IGSF22	283284	broad.mit.edu	37	11	18745745	18745745	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:18745745G>T	uc009yht.2	-	2	229	c.39C>A	c.(37-39)CAC>CAA	p.H13Q	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	13										ovary(4)|large_intestine(2)|kidney(1)	7						CCATGGACACGTGCTCCTGCA	0.597			NA											27	120					1.17739e-12	2.12194e-12	0.005443	1	0
NAV2	89797	broad.mit.edu	37	11	19735466	19735466	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:19735466G>T	uc010rdm.1	+	1	586	c.225G>T	c.(223-225)CCG>CCT	p.P75P	NAV2_uc001mpp.2_Intron|NAV2_uc001mpr.3_Silent_p.P75P|LOC100126784_uc010rdl.1_3'UTR	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	75						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						AGGGGCTCCCGCTGCGGAAGA	0.602			NA											10	48					2.74318e-10	4.60054e-10	0.006214	1	0
ANO3	63982	broad.mit.edu	37	11	26664731	26664731	+	Silent	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:26664731T>C	uc001mqt.3	+	23	2423	c.2278T>C	c.(2278-2280)TTG>CTG	p.L760L	ANO3_uc010rdr.1_Silent_p.L744L|ANO3_uc010rds.1_Silent_p.L599L|ANO3_uc010rdt.1_Silent_p.L614L	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	760	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TTTTGCAGTTTTGCAATTTGG	0.284			NA											24	86					0	0	0.003954	0	0
SYT13	57586	broad.mit.edu	37	11	45275883	45275883	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:45275883T>C	uc001myq.2	-	3	608	c.482A>G	c.(481-483)AAA>AGA	p.K161R	SYT13_uc009yku.1_Missense_Mutation_p.K17R	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	161	Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						GTAGTGGAGTTTGGGGGCCTG	0.517			NA											15	42					0	0	0.003163	0	0
MAPK8IP1	9479	broad.mit.edu	37	11	45924235	45924235	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:45924235G>T	uc001nbr.2	+	5	1087	c.917G>T	c.(916-918)CGG>CTG	p.R306L		NM_005456	NP_005447	Q9UQF2	JIP1_HUMAN	mitogen-activated protein kinase 8 interacting	306					vesicle-mediated transport	nucleus|perinuclear region of cytoplasm	kinesin binding|MAP-kinase scaffold activity|protein kinase inhibitor activity			ovary(2)|breast(1)|skin(1)	4				GBM - Glioblastoma multiforme(35;0.231)		ACTGAGAGCCGGATGTCAGTC	0.667			NA											5	36					1.23904e-05	1.66701e-05	0.000602	1	0
OR4A47	403253	broad.mit.edu	37	11	48510784	48510785	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:48510784_48510785GG>TT	uc010rhx.1	+	1	440_441	c.440_441GG>TT	c.(439-441)TGG>TTT	p.W147F		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTAGTGTCCTGGGTTGGAGGAT	0.441			NA											22	98					0	0	0.004672	0	0
FOLH1	2346	broad.mit.edu	37	11	49175441	49175441	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:49175441C>A	uc001ngy.2	-	17	2188	c.1927G>T	c.(1927-1929)GCT>TCT	p.A643S	FOLH1_uc001ngx.2_Missense_Mutation_p.A75S|FOLH1_uc001ngz.2_Missense_Mutation_p.A643S|FOLH1_uc009yly.2_Missense_Mutation_p.A628S|FOLH1_uc009ylz.2_Missense_Mutation_p.A628S|FOLH1_uc009yma.2_Missense_Mutation_p.A335S	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	643	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	AACTTGGAAGCAATTTCTGTA	0.259			NA											10	66					7.48243e-07	1.06608e-06	0.006214	1	0
OR5L1	219437	broad.mit.edu	37	11	55579627	55579627	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:55579627G>T	uc001nhw.1	+	1	685	c.685G>T	c.(685-687)GGC>TGC	p.G229C		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	229	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				CCTGAAGATGGGCTCTGCAGA	0.512			NA											30	117					3.1745e-13	5.82997e-13	0.008361	1	0
HNRNPUL2	221092	broad.mit.edu	37	11	62490080	62490080	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:62490080C>A	uc001nuw.2	-	6	1281	c.1088G>T	c.(1087-1089)TGC>TTC	p.C363F	HNRNPUL2_uc001nuu.1_RNA	NM_001079559	NP_001073027	Q1KMD3	HNRL2_HUMAN	heterogeneous nuclear ribonucleoprotein U-like	363	B30.2/SPRY.				cell killing	nucleus	ATP binding|nucleic acid binding				0						TACAGCAAAGCAGCCAATAAC	0.453			NA											8	64					5.4927e-09	8.61356e-09	0.004482	1	0
PC	5091	broad.mit.edu	37	11	66631269	66631269	+	Silent	SNP	C	C	A	rs148281644	byFrequency	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:66631269C>A	uc001ojn.1	-	10	1393	c.1344G>T	c.(1342-1344)GCG>GCT	p.A448A	PC_uc001ojo.1_Silent_p.A448A|PC_uc001ojp.1_Silent_p.A448A	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	448	Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	CGCGGAACTCCGCAAGGGCCC	0.662			NA											31	177					1.88708e-17	3.86213e-17	0.008361	1	0
LRRC32	2615	broad.mit.edu	37	11	76372209	76372209	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:76372209C>A	uc001oxq.3	-	3	671	c.428G>T	c.(427-429)CGG>CTG	p.R143L	LRRC32_uc001oxr.3_Missense_Mutation_p.R143L|LRRC32_uc010rsf.1_Missense_Mutation_p.R143L	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	143	Extracellular (Potential).|LRR 4.					integral to plasma membrane					0						CCCCAGCAGCCGCTCCAGCAG	0.687			NA											14	55					0.000219431	0.000278909	0.00245	1	0
ODZ4	26011	broad.mit.edu	37	11	78387379	78387379	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:78387379G>A	uc001ozl.3	-	30	5777	c.5314C>T	c.(5314-5316)CTG>TTG	p.L1772L	ODZ4_uc001ozk.3_5'UTR|ODZ4_uc009yvb.1_Silent_p.L356L	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1772	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CCGTTGGCCAGCAGCAGCCGC	0.622			NA											3	61					0	0	0.004672	0	0
BIRC2	329	broad.mit.edu	37	11	102239138	102239138	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:102239138G>T	uc001pgy.2	+	6	2624	c.1225G>T	c.(1225-1227)GTG>TTG	p.V409L	BIRC2_uc010ruq.1_Missense_Mutation_p.V360L|BIRC2_uc010rur.1_Missense_Mutation_p.V409L	NM_001166	NP_001157	Q13490	BIRC2_HUMAN	baculoviral IAP repeat-containing protein 2	409					cell surface receptor linked signaling pathway|cellular component disassembly involved in apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	CD40 receptor complex|cytosol|internal side of plasma membrane	protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|Epithelial(9;0.11)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0144)		TAGAGACCTGGTGAAACAAAC	0.363			NA											17	103					4.14922e-12	7.34092e-12	0.004007	1	0
GRIA4	2893	broad.mit.edu	37	11	105795225	105795225	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:105795225T>C	uc001pix.2	+	12	2023	c.1577T>C	c.(1576-1578)ATC>ACC	p.I526T	GRIA4_uc001piw.2_Missense_Mutation_p.I526T	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	526	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	TCTATCATGATCAAAAAGCCT	0.438			NA											4	229					0	0	0.000248	0	0
CHEK1	1111	broad.mit.edu	37	11	125497573	125497573	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:125497573T>C	uc009zbo.2	+	3	1029	c.137T>C	c.(136-138)GTA>GCA	p.V46A	CHEK1_uc010sbh.1_Intron|CHEK1_uc010sbi.1_Missense_Mutation_p.V46A|CHEK1_uc001qcf.3_Missense_Mutation_p.V46A|CHEK1_uc009zbp.2_Missense_Mutation_p.V46A|CHEK1_uc001qcg.3_Missense_Mutation_p.V46A|CHEK1_uc009zbq.2_Missense_Mutation_p.V46A|CHEK1_uc001qci.1_RNA	NM_001114122	NP_001107594	O14757	CHK1_HUMAN	checkpoint kinase 1	46	Protein kinase.				cellular response to mechanical stimulus|DNA repair|DNA replication|gamete generation|negative regulation of cell proliferation|reciprocal meiotic recombination|regulation of cyclin-dependent protein kinase activity|replicative senescence	condensed nuclear chromosome|microtubule organizing center|nucleoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|skin(1)	6	all_hematologic(175;0.228)	Breast(109;0.0021)|Lung NSC(97;0.0126)|all_lung(97;0.0132)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0748)		AAGCGTGCCGTAGACTGTCCA	0.343			NA						Other_conserved_DNA_damage_response_genes					3	89					0	0	0.004672	0	0
NCAPD3	23310	broad.mit.edu	37	11	134051057	134051057	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:134051057C>A	uc001qhd.1	-	20	3080	c.2474G>T	c.(2473-2475)GGG>GTG	p.G825V	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	825					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		GAGTACATCCCCACACACCTG	0.522			NA											16	37					2.32078e-09	3.72405e-09	0.003163	1	0
CACNA1C	775	broad.mit.edu	37	12	2714893	2714893	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:2714893G>T	uc009zdu.1	+	25	3470	c.3157G>T	c.(3157-3159)GTG>TTG	p.V1053L	CACNA1C_uc009zdv.1_Missense_Mutation_p.V1030L|CACNA1C_uc001qkb.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qkc.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qke.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qkf.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qjz.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qkd.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qkg.2_Missense_Mutation_p.V1033L|CACNA1C_uc009zdw.1_Missense_Mutation_p.V1033L|CACNA1C_uc001qkh.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qkl.2_Missense_Mutation_p.V1053L|CACNA1C_uc001qkn.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qko.2_Missense_Mutation_p.V1053L|CACNA1C_uc001qkp.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qkr.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qku.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qkq.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qks.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qkt.2_Missense_Mutation_p.V1033L|CACNA1C_uc001qka.1_Missense_Mutation_p.V568L|CACNA1C_uc001qki.1_Missense_Mutation_p.V769L|CACNA1C_uc001qkj.1_Missense_Mutation_p.V769L|CACNA1C_uc001qkk.1_Missense_Mutation_p.V769L|CACNA1C_uc001qkm.1_Missense_Mutation_p.V769L	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1053	III.|Helical; Name=S5 of repeat III; (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CGGGAACATCGTGATTGTCAC	0.587			NA											9	52					6.40141e-05	8.33391e-05	0.000978	1	0
NTF3	4908	broad.mit.edu	37	12	5603979	5603979	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:5603979C>A	uc001qnl.3	+	1	682	c.599C>A	c.(598-600)CCG>CAG	p.P200Q	NTF3_uc001qnk.3_Missense_Mutation_p.P213Q	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	200					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						GAAGCCAGGCCGGTCAAAAAC	0.483	GBM(194;1104 2182 8339 9578 18493)		NA											14	63					1.5739e-10	2.69572e-10	0.004007	1	0
CLEC1A	51267	broad.mit.edu	37	12	10241744	10241744	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:10241744G>C	uc001qxb.2	-	2	277	c.193C>G	c.(193-195)CTG>GTG	p.L65V	CLEC1A_uc009zhf.2_5'UTR|CLEC1A_uc001qxc.2_5'UTR|CLEC1A_uc001qxd.2_Intron|CLEC1A_uc010sgx.1_Intron	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	65	Helical; Signal-anchor for type II membrane protein; (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						AGGGCTGCCAGCCCTATCAGC	0.552			NA											5	52					0	0	0.001168	0	0
LRP6	4040	broad.mit.edu	37	12	12311984	12311984	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:12311984C>A	uc001rah.3	-	12	2712	c.2570G>T	c.(2569-2571)CGT>CTT	p.R857L	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.R857L	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	857	Extracellular (Potential).|Beta-propeller 3.|LDL-receptor class B 15.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				TTTGTTGGCACGCTCAATGCT	0.488			NA											14	72					1.3612e-06	1.91122e-06	0.003163	1	0
TMTC1	83857	broad.mit.edu	37	12	29669312	29669312	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:29669312G>T	uc001rjb.2	-	15	2427	c.1953C>A	c.(1951-1953)GCC>GCA	p.A651A	TMTC1_uc001riz.2_Silent_p.A408A|TMTC1_uc001rja.2_Silent_p.A495A|TMTC1_uc001riy.2_Silent_p.A104A	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	759	TPR 8.					integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					TGCTATAGATGGCTGACAAGA	0.448			NA											27	119					2.44723e-14	4.58144e-14	0.004656	1	0
DENND5B	160518	broad.mit.edu	37	12	31633191	31633191	+	Splice_Site	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:31633191T>A	uc001rki.1	-	3	424	c.238_splice	c.e3-1	p.L80_splice	DENND5B_uc001rkh.1_Splice_Site_p.L115_splice|DENND5B_uc009zjq.1_Splice_Site|DENND5B_uc001rkj.2_Splice_Site_p.L102_splice|DENND5B_uc001rkk.1_Splice_Site_p.L2_splice	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B							integral to membrane				ovary(1)|central_nervous_system(1)	2						CATGCACAACTGTGAAAGAAA	0.363			NA											3	5					0	0	0.004672	0	0
CSRNP2	81566	broad.mit.edu	37	12	51458343	51458343	+	Missense_Mutation	SNP	A	A	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:51458343A>C	uc001rxu.1	-	5	1116	c.818T>G	c.(817-819)ATT>AGT	p.I273S		NM_030809	NP_110436	Q9H175	CSRN2_HUMAN	TGF-beta induced apoptosis protein 12	273					apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGCTTCATAATGGTGTGGAG	0.592			NA											25	88					0	0	0.00632	0	0
TFCP2	7024	broad.mit.edu	37	12	51495784	51495784	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:51495784C>G	uc001rxw.2	-	11	1544	c.1085G>C	c.(1084-1086)AGA>ACA	p.R362T	TFCP2_uc001rxv.1_Missense_Mutation_p.R362T|TFCP2_uc009zlx.1_Missense_Mutation_p.R311T|TFCP2_uc001rxx.2_Intron|TFCP2_uc009zly.1_Missense_Mutation_p.R264T	NM_005653	NP_005644	Q12800	TFCP2_HUMAN	transcription factor CP2	362	DNA-binding.				regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CACATCATCTCTAGTTAATTT	0.323			NA											3	85					0	0	0.004672	0	0
PTPRB	5787	broad.mit.edu	37	12	70948941	70948941	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:70948941A>T	uc001swb.3	-	18	4518	c.4488T>A	c.(4486-4488)GAT>GAA	p.D1496E	PTPRB_uc010sto.1_Missense_Mutation_p.D1406E|PTPRB_uc010stp.1_Missense_Mutation_p.D1406E|PTPRB_uc001swc.3_Missense_Mutation_p.D1714E|PTPRB_uc001swa.3_Missense_Mutation_p.D1626E	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1496	Fibronectin type-III 17.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			ATAACTTACCATCAGCCTCTC	0.423			NA											4	77					0	0	0.000248	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72056983	72056983	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:72056983C>A	uc001swo.2	-	1	767	c.408G>T	c.(406-408)CGG>CGT	p.R136R	ZFC3H1_uc010sts.1_Silent_p.R136R|ZFC3H1_uc001swp.2_Silent_p.R136R|THAP2_uc001swq.2_5'Flank	NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	136					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						CGAGGTGGCTCCGCTCCCAGA	0.647			NA											12	86					0.00010058	0.000129202	0.001368	1	0
NAV3	89795	broad.mit.edu	37	12	78444565	78444565	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:78444565C>A	uc001syp.2	+	11	2327	c.2154C>A	c.(2152-2154)GAC>GAA	p.D718E	NAV3_uc001syo.2_Missense_Mutation_p.D718E|NAV3_uc010sub.1_Missense_Mutation_p.D218E	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	718						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CAACATTTGACAGCACTGTGA	0.473			NA								HNSCC(70;0.22)			16	82					2.4624e-09	3.92521e-09	0.008871	1	0
ATP2B1	490	broad.mit.edu	37	12	90028574	90028574	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:90028574C>A	uc001tbh.2	-	4	949	c.768G>T	c.(766-768)AAG>AAT	p.K256N	ATP2B1_uc001tbg.2_Missense_Mutation_p.K256N	NM_001682	NP_001673	P20020	AT2B1_HUMAN	plasma membrane calcium ATPase 1 isoform 1b	256	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						GTAAGGGATCCTTATCTAAAG	0.348			NA											8	38					7.48243e-07	1.06608e-06	0.006214	1	0
DNAH10	196385	broad.mit.edu	37	12	124362333	124362333	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:124362333G>T	uc001uft.3	+	47	7921	c.7896G>T	c.(7894-7896)ACG>ACT	p.T2632T		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2632	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CATTCTGCACGCTAGCACTTT	0.413			NA											18	111					6.49762e-13	1.17983e-12	0.006122	1	0
RIMBP2	23504	broad.mit.edu	37	12	130921572	130921572	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:130921572C>A	uc001uil.2	-	10	2034	c.1870G>T	c.(1870-1872)GCC>TCC	p.A624S	RIMBP2_uc001uim.2_Missense_Mutation_p.A532S|RIMBP2_uc001uin.1_Missense_Mutation_p.A283S	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	624	Pro-rich.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TGCTCCCAGGCCTCATCCATC	0.672			NA											5	30					0.000602214	0.000749664	0.000602	1	0
STX2	2054	broad.mit.edu	37	12	131293251	131293251	+	Splice_Site	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr12:131293251T>A	uc001uio.2	-	5	448	c.281_splice	c.e5-1	p.A94_splice	STX2_uc001uip.2_Splice_Site_p.A94_splice|STX2_uc010tbj.1_Splice_Site_p.A94_splice	NM_194356	NP_919337	P32856	STX2_HUMAN	syntaxin 2 isoform 2						acrosome reaction|ectoderm development|intracellular protein transport|organ morphogenesis|signal transduction	basolateral plasma membrane|integral to membrane|microsome|soluble fraction	calcium-dependent protein binding|SNAP receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.79e-06)|all cancers(50;5.27e-05)|Epithelial(86;5.29e-05)		GTTCAATAGCTAGGAACAAAT	0.353			NA											51	226					0	0	0.00361	0	0
LATS2	26524	broad.mit.edu	37	13	21557438	21557438	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr13:21557438C>A	uc009zzs.2	-	5	2772	c.2407G>T	c.(2407-2409)GGT>TGT	p.G803C	LATS2_uc001unr.3_Missense_Mutation_p.G803C	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	803	Protein kinase.				cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		TTAATGTGACCATCCAGATCT	0.458			NA											13	58					1.61879e-10	2.74343e-10	0.001368	1	0
SGCG	6445	broad.mit.edu	37	13	23853548	23853548	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr13:23853548G>T	uc001uom.2	+	5	591	c.436G>T	c.(436-438)GAC>TAC	p.D146Y	SGCG_uc009zzv.2_Missense_Mutation_p.D146Y|SGCG_uc009zzw.2_Missense_Mutation_p.D146Y	NM_000231	NP_000222	Q13326	SGCG_HUMAN	gamma sarcoglycan	146	Extracellular (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0		all_cancers(29;4.34e-23)|all_epithelial(30;4.4e-19)|all_lung(29;2.45e-18)|Lung SC(185;0.0228)|Breast(139;0.188)		all cancers(112;0.00255)|Epithelial(112;0.0129)|OV - Ovarian serous cystadenocarcinoma(117;0.0365)|Lung(94;0.205)		CAACTCCAACGACGGCAAGCC	0.383			NA											10	39					0.000978159	0.00120216	0.000978	1	0
SIAH3	283514	broad.mit.edu	37	13	46425646	46425646	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr13:46425646G>T	uc001vap.2	-	1	201	c.119C>A	c.(118-120)CCC>CAC	p.P40H		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	40					multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						GTTGTGTGTGGGGTTGACGAC	0.537			NA											11	76					0.00010058	0.000129202	0.001368	1	0
HTR2A	3356	broad.mit.edu	37	13	47466725	47466725	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr13:47466725C>A	uc001vbq.2	-	2	547	c.413G>T	c.(412-414)GGG>GTG	p.G138V	HTR2A_uc001vbr.2_Missense_Mutation_p.W38L|HTR2A_uc010acr.2_Missense_Mutation_p.G138V	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	138	Extracellular (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CCACCGGTACCCTATGAGGCA	0.567			NA											16	58					6.94344e-10	1.14071e-09	0.006122	1	0
LECT1	11061	broad.mit.edu	37	13	53286963	53286963	+	Silent	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr13:53286963A>T	uc001vhf.2	-	5	621	c.510T>A	c.(508-510)CTT>CTA	p.L170L	LECT1_uc001vhg.2_Silent_p.L170L|LECT1_uc001vhh.2_Silent_p.L159L	NM_007015	NP_008946	O75829	LECT1_HUMAN	leukocyte cell derived chemotaxin 1 isoform 1	170	BRICHOS.				cartilage development|proteoglycan metabolic process	endomembrane system|extracellular region|integral to membrane				ovary(2)	2		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.38e-08)		CCACCCAGATAAGAGAATTTT	0.398			NA											30	94					0	0	0.008361	0	0
GPR18	2841	broad.mit.edu	37	13	99908075	99908075	+	Missense_Mutation	SNP	G	G	T	rs138394107		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr13:99908075G>T	uc001voe.3	-	3	553	c.52C>A	c.(52-54)CCA>ACA	p.P18T	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Missense_Mutation_p.P18T	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	18	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	TATTCATCTGGATGTGAGCTG	0.358			NA											30	112					8.88839e-20	1.90804e-19	0.002096	1	0
NALCN	259232	broad.mit.edu	37	13	102047695	102047695	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr13:102047695T>A	uc001vox.1	-	3	319	c.130A>T	c.(130-132)ATC>TTC	p.I44F	NALCN_uc001voy.2_5'UTR|NALCN_uc001voz.2_Missense_Mutation_p.I44F|NALCN_uc001vpa.2_Missense_Mutation_p.I44F	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	44	Helical; Name=S1 of repeat I; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ATGGCACAGATGCGCAGCAAA	0.433			NA											9	54					0	0	0.004482	0	0
OR4M1	441670	broad.mit.edu	37	14	20248962	20248962	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:20248962G>T	uc010tku.1	+	1	481	c.481G>T	c.(481-483)GCT>TCT	p.A161S		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AATACAGGTGGCTCTCATTGT	0.512			NA											31	244					8.16721e-17	1.63007e-16	0.002096	1	0
DHRS4	10901	broad.mit.edu	37	14	24435560	24435560	+	Silent	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:24435560G>C	uc001wla.2	+	6	633	c.600G>C	c.(598-600)CTG>CTC	p.L200L	DHRS4_uc010aky.2_Intron|DHRS4_uc001wlb.2_Silent_p.L166L|DHRS4_uc010akz.2_Intron|DHRS4_uc001wlc.3_Silent_p.L200L|DHRS4L2_uc001wld.3_Intron|DHRS4L2_uc001wle.3_Intron	NM_021004	NP_066284	Q9BTZ2	DHRS4_HUMAN	peroxisomal short-chain alcohol dehydrogenase	200						mitochondrion|nuclear membrane|peroxisome	binding|carbonyl reductase (NADPH) activity			ovary(1)	1				GBM - Glioblastoma multiforme(265;0.00962)	Vitamin A(DB00162)	CCATAGAGCTGGCCCCAAGGA	0.507			NA											14	180					0	0	0.003163	0	0
LRFN5	145581	broad.mit.edu	37	14	42355863	42355863	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:42355863G>A	uc001wvm.2	+	3	1233	c.35G>A	c.(34-36)GGC>GAC	p.G12D	LRFN5_uc010ana.2_Missense_Mutation_p.G12D	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	12						integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TTTCTCATTGGCATAGCAGTG	0.373			NA								HNSCC(30;0.082)			11	52					0	0	0.000978	0	0
FSCB	84075	broad.mit.edu	37	14	44975985	44975985	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:44975985G>T	uc001wvn.2	-	1	515	c.206C>A	c.(205-207)ACT>AAT	p.T69N		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	69						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		AGACTTACTAGTCATTTCCTG	0.423			NA											27	129					7.92952e-12	1.38767e-11	0.003954	1	0
RPL10L	140801	broad.mit.edu	37	14	47120853	47120853	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:47120853G>T	uc001wwg.2	-	1	176	c.87C>A	c.(85-87)GCC>GCA	p.A29A		NM_080746	NP_542784	Q96L21	RL10L_HUMAN	ribosomal protein L10-like protein	29					spermatogenesis|translation	cytosolic large ribosomal subunit|nucleus	structural constituent of ribosome			ovary(1)	1						TGCGGATCTTGGCATCAGGAA	0.527			NA											18	148					4.75885e-15	9.01382e-15	0.00499	1	0
KCNH5	27133	broad.mit.edu	37	14	63447817	63447817	+	Nonsense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:63447817T>A	uc001xfx.2	-	6	766	c.715A>T	c.(715-717)AAA>TAA	p.K239*	KCNH5_uc001xfy.2_Nonsense_Mutation_p.K239*|KCNH5_uc001xfz.1_Nonsense_Mutation_p.K181*|KCNH5_uc001xga.2_Nonsense_Mutation_p.K181*	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	239	Extracellular (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TGCTTTGTTTTGAAGGAAACA	0.368			NA											7	48					0	0	0.001984	0	0
GPHB5	122876	broad.mit.edu	37	14	63784422	63784422	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:63784422G>T	uc010apu.2	-	1	142	c.142C>A	c.(142-144)CCA>ACA	p.P48T	GPHB5_uc001xgc.2_Missense_Mutation_p.P38T	NM_145171	NP_660154	Q86YW7	GPHB5_HUMAN	glycoprotein beta 5	48						extracellular region	hormone activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00372)|all cancers(60;0.0226)|BRCA - Breast invasive adenocarcinoma(234;0.0978)		CTGCAGCCTGGCTTCTTGGCC	0.597			NA											8	40					5.18039e-06	7.14894e-06	0.00308	1	0
SYNE2	23224	broad.mit.edu	37	14	64516346	64516346	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:64516346G>C	uc001xgm.2	+	47	7625	c.7395G>C	c.(7393-7395)TTG>TTC	p.L2465F	SYNE2_uc001xgl.2_Missense_Mutation_p.L2465F	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	2465	Potential.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		ATACCCAGTTGGAAGCAAAGA	0.358			NA											7	43					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	14	66480164	66480164	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:66480164C>T	uc001xit.2	-	1	469	c.344G>A	c.(343-345)GGT>GAT	p.G115D						SubName: Full=Nuclease sensitive element binding protein-1;												NA						TGCCTTCGCACCCTTTTCTCC	0.483			NA											32	147					0	0	0.003271	0	0
SERPINA6	866	broad.mit.edu	37	14	94770786	94770786	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:94770786A>G	uc001ycv.2	-	5	1291	c.1187T>C	c.(1186-1188)CTT>CCT	p.L396P	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	396					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CGCCAGGAAAAGGCTGCTCCA	0.527			NA											3	107					0	0	0.000248	0	0
EVL	51466	broad.mit.edu	37	14	100604129	100604129	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:100604129C>G	uc001ygt.2	+	11	1317	c.1078C>G	c.(1078-1080)CCT>GCT	p.P360A	EVL_uc001ygv.2_Missense_Mutation_p.P366A|EVL_uc001ygu.2_Missense_Mutation_p.P362A|EVL_uc010avu.2_Missense_Mutation_p.P219A	NM_016337	NP_057421	Q9UI08	EVL_HUMAN	Enah/Vasp-like	360	EVH2.				actin polymerization or depolymerization|axon guidance|cell surface receptor linked signaling pathway|organ morphogenesis	cytoskeleton|cytosol|focal adhesion|lamellipodium	actin binding|profilin binding|SH3 domain binding			large_intestine(2)|ovary(1)	3		Melanoma(154;0.152)				TCAGTCGCAGCCTCACTCTAG	0.607			NA											16	91					0	0	0.004007	0	0
DLK1	8788	broad.mit.edu	37	14	101200835	101200835	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:101200835C>T	uc001yhs.3	+	5	907	c.754C>T	c.(754-756)CCC>TCC	p.P252S	DLK1_uc001yhu.3_Intron	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	252	Extracellular (Potential).				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				CGCGCTGAGCCCCCAGCAGGT	0.677			NA											12	58					0	0	0.001855	0	0
AHNAK2	113146	broad.mit.edu	37	14	105419467	105419467	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:105419467T>C	uc010axc.1	-	7	2441	c.2321A>G	c.(2320-2322)AAG>AGG	p.K774R	AHNAK2_uc001ypx.2_Missense_Mutation_p.K674R	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	774						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CTTGGGGCCCTTGAGGTCCAC	0.632			NA											46	275					0	0	0.00361	0	0
PLCB2	5330	broad.mit.edu	37	15	40586546	40586546	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr15:40586546A>G	uc001zld.2	-	19	2283	c.1982T>C	c.(1981-1983)ATG>ACG	p.M661T	PLCB2_uc010bbo.2_Missense_Mutation_p.M657T|PLCB2_uc010ucm.1_Missense_Mutation_p.M661T	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	661	PI-PLC Y-box.				activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		CGGCCGGCGCATGAACTCATG	0.582			NA											15	56					0	0	0.00245	0	0
TRIM69	140691	broad.mit.edu	37	15	45059693	45059693	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr15:45059693C>T	uc001zuf.2	+	8	2121	c.1226C>T	c.(1225-1227)CCT>CTT	p.P409L	TRIM69_uc001zui.1_Missense_Mutation_p.P205L|TRIM69_uc010bdy.1_Missense_Mutation_p.P188L|TRIM69_uc001zug.1_Missense_Mutation_p.P409L|TRIM69_uc001zuh.1_Missense_Mutation_p.P250L	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	409	B30.2/SPRY.				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		CCTCTAACTCCTGAGCAAGGA	0.448	Pancreas(84;519 1450 1802 20427 34706)		NA											5	84					0	0	0.000602	0	0
SCG3	29106	broad.mit.edu	37	15	51991556	51991556	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr15:51991556G>C	uc002abh.2	+	9	1434	c.1026G>C	c.(1024-1026)AAG>AAC	p.K342N	SCG3_uc010ufz.1_Missense_Mutation_p.K110N	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	342					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		CCAAAAACAAGCTAGAAAAAA	0.313			NA											12	128					0	0	0.00245	0	0
PTPLAD1	51495	broad.mit.edu	37	15	65847232	65847232	+	Silent	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr15:65847232A>T	uc002apc.2	+	3	286	c.138A>T	c.(136-138)GGA>GGT	p.G46G	PTPLAD1_uc002apb.1_RNA|PTPLAD1_uc010uiw.1_Silent_p.G46G	NM_016395	NP_057479	Q9P035	HACD3_HUMAN	protein tyrosine phosphatase-like A domain	46	CS.|Cytoplasmic (Potential).				activation of JUN kinase activity|fatty acid biosynthetic process|I-kappaB kinase/NF-kappaB cascade|Rac protein signal transduction	endoplasmic reticulum membrane|integral to membrane	GTPase activator activity|lyase activity|protein binding				0						TAGCTCAAGGACATGGTGCCA	0.438			NA											27	198					0	0	0.005443	0	0
CCDC33	80125	broad.mit.edu	37	15	74573106	74573106	+	Silent	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr15:74573106C>T	uc002axo.2	+	9	1381	c.987C>T	c.(985-987)GGC>GGT	p.G329G	CCDC33_uc002axp.2_Silent_p.G151G	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	532							protein binding			ovary(3)|skin(2)	5						CAGGGAAAGGCTTGGACGGGC	0.532			NA											10	56					0	0	0.001855	0	0
SGK269	79834	broad.mit.edu	37	15	77471208	77471208	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr15:77471208C>A	uc002bcm.2	-	3	3369	c.3061G>T	c.(3061-3063)GAG>TAG	p.E1021*	SGK269_uc002bcn.2_Nonsense_Mutation_p.E1021*	NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1021					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		AATGCATTCTCTGCTCTACCC	0.468			NA											9	63					0.00448238	0.00534565	0.004482	1	0
SLC28A1	9154	broad.mit.edu	37	15	85448795	85448795	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr15:85448795G>T	uc002blg.2	+	8	831	c.629G>T	c.(628-630)GGA>GTA	p.G210V	SLC28A1_uc010upd.1_Missense_Mutation_p.G132V|SLC28A1_uc010bnb.2_Missense_Mutation_p.G210V|SLC28A1_uc010upe.1_Missense_Mutation_p.G210V|SLC28A1_uc010upf.1_Missense_Mutation_p.G210V|SLC28A1_uc010upg.1_Missense_Mutation_p.G210V	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	210	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GTGTCTTGGGGACTTGGACTG	0.582			NA											15	54					1.02788e-11	1.78586e-11	0.00499	1	0
SLC28A1	9154	broad.mit.edu	37	15	85487830	85487830	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr15:85487830C>T	uc002blg.2	+	17	1899	c.1697C>T	c.(1696-1698)TCC>TTC	p.S566F	SLC28A1_uc010bnb.2_Missense_Mutation_p.S566F|SLC28A1_uc010upe.1_Missense_Mutation_p.S400F|SLC28A1_uc010upf.1_Missense_Mutation_p.S566F|SLC28A1_uc010upg.1_Intron	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	566					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			AGCGACTTCTCCCAGATAGTG	0.637			NA											3	35					0	0	0.004672	0	0
LINS1	55180	broad.mit.edu	37	15	101114229	101114229	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr15:101114229C>A	uc002bwe.2	-	6	1140	c.849G>T	c.(847-849)ATG>ATT	p.M283I	LINS1_uc002bwd.2_5'Flank|LINS1_uc002bwf.2_Missense_Mutation_p.M283I|LINS1_uc002bwg.2_Missense_Mutation_p.M283I|LINS1_uc002bwh.2_Missense_Mutation_p.M283I|LINS1_uc010usa.1_Missense_Mutation_p.M164I|LINS1_uc002bwi.2_Missense_Mutation_p.M283I	NM_001040614	NP_001035704	Q8NG48	LINES_HUMAN	lines homolog 1	283											0	Lung NSC(78;0.0018)|all_lung(78;0.00223)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.00095)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)			TAACTTCTAGCATGCAAGATG	0.413			NA											8	50					1.26484e-09	2.04321e-09	0.00308	1	0
OR1F1	4992	broad.mit.edu	37	16	3255074	3255074	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:3255074G>T	uc010uwu.1	+	1	828	c.828G>T	c.(826-828)GTG>GTT	p.V276V		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGCTACTGTGTTGTATACAG	0.478			NA											27	167					1.75199e-13	3.24218e-13	0.007291	1	0
UBN1	29855	broad.mit.edu	37	16	4910738	4910738	+	Silent	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:4910738C>T	uc002cyb.2	+	7	1084	c.745C>T	c.(745-747)CTA>TTA	p.L249L	UBN1_uc010uxw.1_Silent_p.L249L|UBN1_uc002cyc.2_Silent_p.L249L	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	249	Lys-rich.				chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						TAAAGAGATGCTAAAGAAATT	0.478			NA											38	171					0	0	0.003755	0	0
PPL	5493	broad.mit.edu	37	16	4940293	4940293	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:4940293G>C	uc002cyd.1	-	18	2295	c.2205C>G	c.(2203-2205)TTC>TTG	p.F735L		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	735	Spectrin 4.|Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						GGCCGCGGTGGAAGTGCTCGT	0.607			NA											6	50					0	0	0.001984	0	0
USP7	7874	broad.mit.edu	37	16	8995984	8995984	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:8995984C>A	uc002czl.2	-	18	2201	c.2002G>T	c.(2002-2004)GAG>TAG	p.E668*	USP7_uc010uyk.1_Nonsense_Mutation_p.E569*|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Nonsense_Mutation_p.E569*|USP7_uc002czk.2_Nonsense_Mutation_p.E652*|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	668	Interaction with ICP0/VMW110.				interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						GCAGCCAGCTCGGGATCAACT	0.463			NA											8	84					0.000442599	0.000556707	0.006214	1	0
GRIN2A	2903	broad.mit.edu	37	16	10031860	10031860	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:10031860G>A	uc002czo.3	-	3	1511	c.963C>T	c.(961-963)TAC>TAT	p.Y321Y	GRIN2A_uc010uym.1_Silent_p.Y321Y|GRIN2A_uc010uyn.1_Silent_p.Y164Y|GRIN2A_uc002czr.3_Silent_p.Y321Y	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	321	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCATCTGCCCGTAGCAGCTGG	0.562			NA											8	50					0	0	0.00308	0	0
ABCC6P1	653190	broad.mit.edu	37	16	18602624	18602625	+	Missense_Mutation	DNP	GC	GC	AT			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	GC	GC	-	-	GC	GC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:18602624_18602625GC>AT	uc002dfg.2	+	8	1022_1023	c.822_823GC>AT	c.(820-825)CTGCTC>CTATTC	p.L275F	ABCC6P1_uc010vam.1_Missense_Mutation_p.L218F	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						TCCCCAAGCTGCTCAGGTGAGT	0.584			NA											13	85					0	0	0.004672	0	0
ARMC5	79798	broad.mit.edu	37	16	31476036	31476036	+	Silent	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:31476036A>T	uc002ecc.2	+	4	2221	c.1692A>T	c.(1690-1692)CCA>CCT	p.P564P	ARMC5_uc010vfn.1_Silent_p.P659P|ARMC5_uc010vfo.1_Silent_p.P596P|ARMC5_uc002eca.3_Silent_p.P564P|ARMC5_uc010vfp.1_Silent_p.P372P|ARMC5_uc002ecb.2_Silent_p.P564P	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	564							binding			pancreas(1)	1						CGCCCAGCCCACGTGCACTGC	0.706			NA											3	14					0	0	0.004672	0	0
BBS2	583	broad.mit.edu	37	16	56519510	56519510	+	Missense_Mutation	SNP	C	C	T	rs138913160	byFrequency	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:56519510C>T	uc002ejd.2	-	16	2285	c.2051G>A	c.(2050-2052)CGT>CAT	p.R684H		NM_031885	NP_114091	Q9BXC9	BBS2_HUMAN	Bardet-Biedl syndrome 2 protein	684					adult behavior|brain morphogenesis|cerebral cortex development|cilium morphogenesis|fat cell differentiation|hippocampus development|melanosome transport|negative regulation of multicellular organism growth|photoreceptor cell maintenance|protein localization to organelle|regulation of cilium beat frequency involved in ciliary motility|sperm axoneme assembly|striatum development	BBSome|cilium membrane|microtubule basal body|motile cilium	protein binding			ovary(1)	1						ACCCCGCAGACGACCTGCTCT	0.388			NA							Bardet-Biedl_syndrome				5	184					0	0	0.000602	0	0
SMPD3	55512	broad.mit.edu	37	16	68405827	68405827	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:68405827G>T	uc002ewa.2	-	3	680	c.258C>A	c.(256-258)TCC>TCA	p.S86S	SMPD3_uc010cfe.2_Silent_p.S86S|SMPD3_uc010vlh.1_Silent_p.S86S	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	86	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	ACTGCAGTGGGGACCAGAAGA	0.657			NA											5	63					0.000602214	0.000749664	0.000602	1	0
PDPR	55066	broad.mit.edu	37	16	70190519	70190519	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:70190519G>T	uc002eyf.1	+	19	3334	c.2377G>T	c.(2377-2379)GGG>TGG	p.G793W	CLEC18C_uc002exy.2_Intron|PDPR_uc010vlr.1_Missense_Mutation_p.G693W|PDPR_uc002eyg.1_Missense_Mutation_p.G460W|PDPR_uc002eyh.2_Missense_Mutation_p.G138W|PDPR_uc010vls.1_Missense_Mutation_p.G138W	NM_017990	NP_060460	Q8NCN5	PDPR_HUMAN	pyruvate dehydrogenase phosphatase regulatory	793					glycine catabolic process|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	aminomethyltransferase activity|oxidoreductase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.124)		TTACCGGAATGGGCAGTATGT	0.542			NA											51	267					7.91745e-34	1.81238e-33	0.00361	1	0
SF3B3	23450	broad.mit.edu	37	16	70599102	70599102	+	Silent	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:70599102C>T	uc002ezf.2	+	19	2809	c.2598C>T	c.(2596-2598)ATC>ATT	p.I866I		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	866					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				CCTCTGTGATCCGAGTGATGA	0.542			NA											26	71					0	0	0.00333	0	0
CHST4	10164	broad.mit.edu	37	16	71570875	71570875	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr16:71570875C>A	uc002fan.2	+	2	476	c.295C>A	c.(295-297)CGG>AGG	p.R99R	CHST4_uc002fao.2_Silent_p.R99R	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	99	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						GGATCTGATACGGGCCGTCTT	0.592			NA											28	69					4.59853e-10	7.60647e-10	0.005443	1	0
OR1A1	8383	broad.mit.edu	37	17	3119679	3119679	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:3119679G>T	uc010vrc.1	+	1	765	c.765G>T	c.(763-765)ATG>ATT	p.M255I		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GTACAGTCATGGGCACGTATT	0.488			NA											29	156					3.1745e-13	5.82997e-13	0.008361	1	0
TEKT1	83659	broad.mit.edu	37	17	6703489	6703489	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:6703489G>A	uc002gdt.2	-	8	1224	c.1114C>T	c.(1114-1116)CTG>TTG	p.L372L	TEKT1_uc010vth.1_Silent_p.L226L	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	372	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				TCCTCCTGCAGGGCAAGCTGT	0.483			NA											13	105					0	0	0.001855	0	0
TP53	7157	broad.mit.edu	37	17	7577548	7577548	+	Missense_Mutation	SNP	C	C	A	rs28934575		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:7577548C>A	uc002gim.2	-	7	927	c.733G>T	c.(733-735)GGC>TGC	p.G245C	TP53_uc002gig.1_Missense_Mutation_p.G245C|TP53_uc002gih.2_Missense_Mutation_p.G245C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.G113C|TP53_uc010cng.1_Missense_Mutation_p.G113C|TP53_uc002gii.1_Missense_Mutation_p.G113C|TP53_uc010cnh.1_Missense_Mutation_p.G245C|TP53_uc010cni.1_Missense_Mutation_p.G245C|TP53_uc002gij.2_Missense_Mutation_p.G245C|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.G152C|TP53_uc002gio.2_Missense_Mutation_p.G113C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	245	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		G -> N (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> A (in sporadic cancers; somatic mutation).|G -> V (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> F (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> R (in sporadic cancers; somatic mutation).|G -> E (in a sporadic cancer; somatic mutation).|G -> D (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> H (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|G -> L (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G245S(274)|p.G245D(93)|p.G245V(50)|p.G245C(47)|p.G245R(10)|p.G245A(8)|p.0?(7)|p.G245G(3)|p.G245fs*2(3)|p.G245N(2)|p.G245H(1)|p.G245L(1)|p.G244fs*17(1)|p.G245F(1)|p.G245E(1)|p.C242_M246>L(1)|p.C238_M246delCNSSCMGGM(1)|p.S241_G245delSCMGG(1)|p.C242fs*98(1)|p.G245fs*22(1)|p.M243fs*18(1)|p.G245del(1)|p.G245fs*14(1)|p.G245fs*17(1)|p.G245fs*16(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CGGTTCATGCCGCCCATGCAG	0.577	Pancreas(47;798 1329 9957 10801)	G245S(SKLMS1_SOFT_TISSUE)|G245S(LS1034_LARGE_INTESTINE)|G245S(NUGC2_STOMACH)|G245S(PANC0403_PANCREAS)|G245S(SKMEL2_SKIN)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumensyndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			38	63					2.75727e-19	5.84106e-19	0.004878	1	0
ARHGEF15	22899	broad.mit.edu	37	17	8221720	8221720	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:8221720A>T	uc002glc.2	+	10	1841	c.1720A>T	c.(1720-1722)ACA>TCA	p.T574S	ARHGEF15_uc002gld.2_Missense_Mutation_p.T574S|ARHGEF15_uc010vuw.1_Missense_Mutation_p.T463S	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	574	DH.				negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCTGCGCCAGACAGAAGAGGG	0.632			NA											15	141					0	0	0.00499	0	0
MYH8	4626	broad.mit.edu	37	17	10296216	10296216	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:10296216G>A	uc002gmm.2	-	37	5490	c.5395C>T	c.(5395-5397)CGT>TGT	p.R1799C	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1799	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TCATCTAGACGATGCTGCAGG	0.572			NA							Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				54	175					0	0	0.00361	0	0
MYH2	4620	broad.mit.edu	37	17	10443964	10443964	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:10443964C>A	uc010coi.2	-	11	1083	c.955G>T	c.(955-957)GGG>TGG	p.G319W	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G319W|MYH2_uc010coj.2_Missense_Mutation_p.G319W	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	319	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTGATCTCCCCTTGACTGACA	0.383			NA											13	54					0.00400662	0.00480198	0.004007	1	0
DNAH9	1770	broad.mit.edu	37	17	11592912	11592912	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:11592912T>A	uc002gne.2	+	20	3841	c.3773T>A	c.(3772-3774)CTG>CAG	p.L1258Q	DNAH9_uc010coo.2_Missense_Mutation_p.L552Q	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1258	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CATCAAATGCTGGATGCCAGG	0.483			NA											42	83					0	0	0.002522	0	0
FAM83G	644815	broad.mit.edu	37	17	18907267	18907267	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:18907267C>T	uc002guw.2	-	2	255	c.88G>A	c.(88-90)GAG>AAG	p.E30K	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	30										ovary(1)|central_nervous_system(1)	2						AGCCGCTGCTCCTCGCTGTAG	0.652			NA											18	46					0	0	0.00499	0	0
WSB1	26118	broad.mit.edu	37	17	25630509	25630509	+	Missense_Mutation	SNP	T	T	C	rs142114425		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:25630509T>C	uc002gzd.1	+	3	642	c.326T>C	c.(325-327)ATA>ACA	p.I109T	WSB1_uc010vzy.1_Missense_Mutation_p.I109T|WSB1_uc010vzz.1_Missense_Mutation_p.I78T|WSB1_uc010crf.1_Intron|WSB1_uc002gze.1_Intron|WSB1_uc002gzf.1_RNA	NM_015626	NP_056441	Q9Y6I7	WSB1_HUMAN	WD repeat and SOCS box-containing 1 isoform 1	109					intracellular signal transduction	intracellular	protein binding				0	all_cancers(1;2e-13)|all_epithelial(1;4.8e-15)|Lung NSC(42;0.00152)		BRCA - Breast invasive adenocarcinoma(3;0.0152)	UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		TGTGGAGATATAGTCTGGAGT	0.383			NA											32	123					0	0	0.002445	0	0
WSB1	26118	broad.mit.edu	37	17	25631888	25631888	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:25631888G>T	uc002gzd.1	+	4	877	c.561G>T	c.(559-561)GTG>GTT	p.V187V	WSB1_uc010vzy.1_Silent_p.V187V|WSB1_uc010vzz.1_Silent_p.V156V|WSB1_uc010crf.1_Silent_p.V41V|WSB1_uc002gze.1_Silent_p.V41V|WSB1_uc002gzf.1_RNA	NM_015626	NP_056441	Q9Y6I7	WSB1_HUMAN	WD repeat and SOCS box-containing 1 isoform 1	187	WD 3.				intracellular signal transduction	intracellular	protein binding				0	all_cancers(1;2e-13)|all_epithelial(1;4.8e-15)|Lung NSC(42;0.00152)		BRCA - Breast invasive adenocarcinoma(3;0.0152)	UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		TGATCCTGGTGTCAGCTTCAA	0.378			NA											28	117					6.38683e-12	1.12176e-11	0.008361	1	0
OMG	4974	broad.mit.edu	37	17	29622582	29622582	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:29622582G>T	uc002hgj.2	-	2	981	c.768C>A	c.(766-768)ACC>ACA	p.T256T	NF1_uc002hgg.2_Intron|NF1_uc002hgh.2_Intron|NF1_uc002hgi.1_Intron|NF1_uc010cso.2_Intron	NM_002544	NP_002535	P23515	OMGP_HUMAN	oligodendrocyte myelin glycoprotein precursor	256	Ser/Thr-rich.				cell adhesion|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	anchored to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2		all_cancers(10;6.97e-11)|all_epithelial(10;0.0051)|all_hematologic(16;0.0149)|Breast(31;0.0155)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|all_lung(9;0.0468)|Lung NSC(157;0.094)		UCEC - Uterine corpus endometrioid carcinoma (4;6.64e-05)|all cancers(4;1.81e-13)|Epithelial(4;4.04e-12)|OV - Ovarian serous cystadenocarcinoma(4;9.49e-12)|GBM - Glioblastoma multiforme(4;0.121)		ATGATATTTGGGTAGAACATG	0.398			NA											15	112					3.27435e-08	5.00479e-08	0.00245	1	0
AMAC1	146861	broad.mit.edu	37	17	33520803	33520803	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:33520803G>T	uc002hjd.2	-	1	610	c.524C>A	c.(523-525)CCT>CAT	p.P175H		NM_152462	NP_689675	Q8N808	AMAC1_HUMAN	acyl-malonyl condensing enzyme 1	175	Helical; (Potential).					integral to membrane					0				BRCA - Breast invasive adenocarcinoma(366;0.0917)		CCAGAGTCCAGGTCCCACAAT	0.607			NA											51	218					2.81731e-22	6.15728e-22	0.00361	1	0
CCL4	6351	broad.mit.edu	37	17	34432678	34432678	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:34432678G>T	uc002hkw.1	+	3	331	c.252G>T	c.(250-252)GAG>GAT	p.E84D	CCL4_uc002hkx.1_RNA	NM_002984	NP_002975	P13236	CCL4_HUMAN	chemokine C-C motif ligand 4 isoform 1	84					cell adhesion|cell-cell signaling|cellular component movement|chemotaxis|establishment or maintenance of cell polarity|immune response|inflammatory response|response to virus|viral genome replication	extracellular space	chemokine activity|receptor signaling protein tyrosine kinase activity				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGGTCCAGGAGTACGTGTATG	0.502	Colon(139;824 1752 21188 21615 24765)		NA											17	122					1.56452e-12	2.78843e-12	0.007413	1	0
MEOX1	4222	broad.mit.edu	37	17	41738726	41738726	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:41738726G>T	uc002idz.2	-	1	206	c.177C>A	c.(175-177)TAC>TAA	p.Y59*	MEOX1_uc002iea.2_Nonsense_Mutation_p.Y59*|MEOX1_uc002ieb.2_5'UTR	NM_004527	NP_004518	P50221	MEOX1_HUMAN	mesenchyme homeobox 1 isoform 1	59						nucleus	sequence-specific DNA binding				0		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0753)		AGAAGTCAGGGTACGCTGCCG	0.647			NA											11	72					3.86212e-05	5.08284e-05	0.008291	1	0
LRRC37A	9884	broad.mit.edu	37	17	44408380	44408380	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:44408380C>A	uc002ikg.2	+	9	3740	c.3737C>A	c.(3736-3738)TCT>TAT	p.S1246Y	ARL17A_uc002iki.3_Intron|ARL17A_uc002ikh.3_Intron|ARL17B_uc002ikf.2_Intron|LRRC37A_uc002ikj.2_Missense_Mutation_p.S207Y|LRRC37A_uc010daw.1_Missense_Mutation_p.S176Y	NM_014834	NP_055649	A6NMS7	L37A1_HUMAN	leucine rich repeat containing 37A precursor	1246	Extracellular (Potential).					integral to membrane					0		Melanoma(429;0.211)		BRCA - Breast invasive adenocarcinoma(366;0.232)		GCAGCAGTCTCTGTGCTGAAA	0.557			NA											11	18					0.00074312	0.000920326	0.006122	1	0
KIF2B	84643	broad.mit.edu	37	17	51901012	51901012	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:51901012G>T	uc002iua.2	+	1	774	c.618G>T	c.(616-618)CTG>CTT	p.L206L	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	206					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TCTCAGTCCTGGAGCCCCCGC	0.552			NA											10	64					1.58986e-06	2.21938e-06	0.008291	1	0
C17orf71	55181	broad.mit.edu	37	17	57288024	57288024	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:57288024C>G	uc002ixi.2	+	1	654	c.612C>G	c.(610-612)TTC>TTG	p.F204L		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	204					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					TTTACCTATTCTCTGTCTGTC	0.498			NA											13	64					0	0	0.001855	0	0
SCN4A	6329	broad.mit.edu	37	17	62018615	62018615	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:62018615C>A	uc002jds.1	-	24	5104	c.5027G>T	c.(5026-5028)TGC>TTC	p.C1676F		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1676					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GATGTCCAGGCAGTGGATCTT	0.567			NA											23	89					1.85244e-09	2.98243e-09	0.00333	1	0
GPR142	350383	broad.mit.edu	37	17	72368403	72368403	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:72368403G>T	uc010wqy.1	+	4	1053	c.1053G>T	c.(1051-1053)CGG>CGT	p.R351R	GPR142_uc010wqx.1_Silent_p.R263R	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	351	Cytoplasmic (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TGCAGCCCCGGGTGGGCAAGA	0.632			NA											14	43					2.61681e-11	4.51401e-11	0.00245	1	0
CD300LB	124599	broad.mit.edu	37	17	72527477	72527477	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:72527477G>T	uc002jkx.2	-	1	137	c.124C>A	c.(124-126)CCT>ACT	p.P42T	CD300LB_uc010wqz.1_Missense_Mutation_p.P42T	NM_174892	NP_777552	A8K4G0	CLM7_HUMAN	CD300 molecule-like family member b	5						integral to membrane|plasma membrane	receptor activity			ovary(1)	1						AGCAGAGCAGGGGGCAGCCAC	0.627			NA											13	47					9.04627e-18	1.8593e-17	0.001855	1	0
CCDC40	55036	broad.mit.edu	37	17	78023992	78023992	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr17:78023992A>T	uc010dht.2	+	7	1096	c.1069A>T	c.(1069-1071)AGC>TGC	p.S357C	CCDC40_uc010wub.1_Missense_Mutation_p.S357C|CCDC40_uc002jxm.3_Missense_Mutation_p.S140C	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	357	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			AATGGCCTCGAGCGAGCGCAG	0.632			NA											8	22					0	0	0.00308	0	0
ASXL3	80816	broad.mit.edu	37	18	31323602	31323602	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr18:31323602C>G	uc010dmg.1	+	12	3845	c.3790C>G	c.(3790-3792)CTA>GTA	p.L1264V	ASXL3_uc002kxq.2_Missense_Mutation_p.L971V	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1264	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATCCTCTGTCCTAATGTCTGT	0.378			NA											19	76					0	0	0.007413	0	0
ZNF397	84307	broad.mit.edu	37	18	32822650	32822650	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr18:32822650G>C	uc010dmp.2	+	2	372	c.216G>C	c.(214-216)CAG>CAC	p.Q72H	ZNF397_uc002kyi.2_Missense_Mutation_p.Q72H|ZNF397_uc010dmq.2_Missense_Mutation_p.Q72H|ZNF397_uc010dmr.2_Intron|ZNF397_uc002kyj.2_Missense_Mutation_p.Q72H|ZNF397_uc002kyk.1_Missense_Mutation_p.Q72H	NM_001135178	NP_001128650	Q8NF99	ZN397_HUMAN	zinc finger protein 397 isoform 1	72	SCAN box.				viral reproduction	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GCCGACTCCAGGAACTTTGCT	0.512			NA											13	71					0	0	0.001855	0	0
SYT4	6860	broad.mit.edu	37	18	40853633	40853633	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr18:40853633A>T	uc002law.2	-	2	1130	c.761T>A	c.(760-762)ATT>AAT	p.I254N	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Missense_Mutation_p.I236N|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	254	Phospholipid binding (Probable).|C2 1.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						AACTTCCCCAATGATATCATC	0.353	NSCLC(85;81 1419 2855 22820 35912)		NA											8	53					0	0	0.00308	0	0
SERPINB5	5268	broad.mit.edu	37	18	61166417	61166417	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr18:61166417G>A	uc002liz.3	+	6	774	c.632G>A	c.(631-633)AGT>AAT	p.S211N		NM_002639	NP_002630	P36952	SPB5_HUMAN	serine (or cysteine) proteinase inhibitor, clade	211					cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			ovary(1)	1						AACATTGACAGTATCAATTGT	0.423			NA											9	60					0	0	0.006214	0	0
SERPINB13	5275	broad.mit.edu	37	18	61259614	61259614	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr18:61259614C>A	uc002ljc.2	+	4	426	c.258C>A	c.(256-258)TTC>TTA	p.F86L	SERPINB13_uc002ljd.2_5'UTR|SERPINB13_uc010xep.1_Missense_Mutation_p.F95L|SERPINB13_uc010xeq.1_Intron|SERPINB13_uc010xer.1_Intron	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	86					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						ATCAACAATTCCAAAAGTTTT	0.353			NA											12	62					0.000151284	0.000193821	0.001855	1	0
SOCS6	9306	broad.mit.edu	37	18	67992886	67992886	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr18:67992886G>T	uc002lkr.1	+	2	1298	c.982G>T	c.(982-984)GGA>TGA	p.G328*	SOCS6_uc010dqq.2_Nonsense_Mutation_p.G328*	NM_004232	NP_004223	O14544	SOCS6_HUMAN	suppressor of cytokine signaling 6	328					defense response|JAK-STAT cascade|negative regulation of signal transduction|regulation of growth	cytoplasm				large_intestine(1)|lung(1)	2		Esophageal squamous(42;0.129)|Colorectal(73;0.152)				GAACTTCAGTGGACTCACTGG	0.493	Melanoma(84;1024 1361 24382 36583 42651)		NA											12	53					6.40141e-05	8.33391e-05	0.000978	1	0
ZNF555	148254	broad.mit.edu	37	19	2852695	2852695	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:2852695G>T	uc002lwo.2	+	4	721	c.632G>T	c.(631-633)CGT>CTT	p.R211L	ZNF555_uc002lwn.3_Missense_Mutation_p.R210L	NM_152791	NP_690004	Q8NEP9	ZN555_HUMAN	zinc finger protein 555	211	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCTTTCCTCGTACTTCCTCC	0.448			NA											24	75					2.27525e-19	4.8626e-19	0.003954	1	0
MUC16	94025	broad.mit.edu	37	19	9061138	9061138	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:9061138T>C	uc002mkp.2	-	3	26512	c.26308A>G	c.(26308-26310)ATC>GTC	p.I8770V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8772	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATTCTAGTGATGGTTTCCGTG	0.493			NA											26	96					0	0	0.00632	0	0
MUC16	94025	broad.mit.edu	37	19	9074617	9074617	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:9074617T>A	uc002mkp.2	-	3	13033	c.12829A>T	c.(12829-12831)ACC>TCC	p.T4277S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4279	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGTGGGAGGTAACCAATGGA	0.493			NA											17	66					0	0	0.00499	0	0
RAVER1	125950	broad.mit.edu	37	19	10444193	10444193	+	Silent	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:10444193C>T	uc002moa.2	-	1	122	c.42G>A	c.(40-42)GGG>GGA	p.G14G		NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	Error:Variant_position_missing_in_Q8IY67_after_alignment						cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			TCTTGGGAAACCCGGCGCCTT	0.716			NA											3	22					0	0	0.004672	0	0
ZNF260	339324	broad.mit.edu	37	19	37005408	37005408	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:37005408C>A	uc002oee.1	-	4	1577	c.733G>T	c.(733-735)GAG>TAG	p.E245*	ZNF260_uc002oed.1_Nonsense_Mutation_p.E242*|ZNF260_uc010eey.1_Nonsense_Mutation_p.E242*|ZNF260_uc002oef.1_Nonsense_Mutation_p.E242*	NM_001012756	NP_001012774	Q3ZCT1	ZN260_HUMAN	zinc finger protein 260	245					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TAAGGTTTCTCTCCTGTGTGA	0.418			NA											30	129					5.90632e-09	9.23221e-09	0.002445	1	0
ZFP36	7538	broad.mit.edu	37	19	39898874	39898874	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:39898874G>A	uc002olh.1	+	2	574	c.516G>A	c.(514-516)CTG>CTA	p.L172L	ZFP36_uc010egn.1_Nonsense_Mutation_p.W45*	NM_003407	NP_003398	P26651	TTP_HUMAN	zinc finger protein 36, C3H type, homolog	172					positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	cytosol|nucleus	AU-rich element binding|DNA binding|mRNA binding|protein binding|single-stranded RNA binding|zinc ion binding			pancreas(1)	1	all_cancers(60;6.54e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.53e-06)|Ovarian(47;0.0512)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GCGAAGACCTGGCGGCCCCGG	0.662	NSCLC(67;1164 1324 12056 21056 30097)		NA											27	122					0	0	0.004656	0	0
ZNF546	339327	broad.mit.edu	37	19	40520110	40520110	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:40520110T>A	uc002oms.2	+	7	1189	c.933T>A	c.(931-933)AGT>AGA	p.S311R	ZNF546_uc002omt.2_Missense_Mutation_p.S285R	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	311	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					AAGCCTTTAGTCGTGTTAGAG	0.408			NA											18	109					0	0	0.006122	0	0
APOC4	346	broad.mit.edu	37	19	45448463	45448463	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:45448463G>A	uc002pag.1	+	3	325	c.285G>A	c.(283-285)CCG>CCA	p.P95P	APOC2_uc002pah.2_5'Flank	NM_001646	NP_001637	P55056	APOC4_HUMAN	apolipoprotein C-IV precursor	95					lipid metabolic process|positive regulation of sequestering of triglyceride|triglyceride homeostasis	high-density lipoprotein particle|very-low-density lipoprotein particle	lipid transporter activity			breast(1)	1	Lung NSC(12;0.00858)|all_lung(12;0.0197)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00334)|Epithelial(262;0.178)		ACCTGGGTCCGCTCACCAAGG	0.592			NA											6	298					0	0	0.001984	0	0
FUZ	80199	broad.mit.edu	37	19	50314895	50314895	+	Missense_Mutation	SNP	T	T	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:50314895T>G	uc002ppq.1	-	4	485	c.380A>C	c.(379-381)GAC>GCC	p.D127A	FUZ_uc002ppr.1_Missense_Mutation_p.D27A|FUZ_uc002pps.1_RNA|FUZ_uc002ppt.1_RNA|FUZ_uc002ppu.1_Missense_Mutation_p.D91A|FUZ_uc002ppv.1_Missense_Mutation_p.D77A|FUZ_uc010ybd.1_Missense_Mutation_p.D127A	NM_025129	NP_079405	Q9BT04	FUZZY_HUMAN	fuzzy homolog	127					cilium assembly|embryonic body morphogenesis|embryonic skeletal system morphogenesis|establishment of planar polarity|hair follicle development|neural tube closure|protein transport|regulation of smoothened signaling pathway	cytoplasm|cytoskeleton					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00793)|GBM - Glioblastoma multiforme(134;0.0116)		CACCCTCAAGTCCTTCTTCAG	0.547			NA											13	495					0	0	0.004007	0	0
BIRC8	112401	broad.mit.edu	37	19	53793473	53793473	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:53793473T>A	uc002qbk.2	-	1	1403	c.155A>T	c.(154-156)AAG>ATG	p.K52M		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	52	BIR.				apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		AGGATCTTCCTTGGGCTTCCA	0.428			NA											19	80					0	0	0.006122	0	0
NLRP12	91662	broad.mit.edu	37	19	54310879	54310879	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:54310879G>C	uc002qch.3	-	4	2333	c.2113C>G	c.(2113-2115)CTG>GTG	p.L705V	NLRP12_uc010eqw.2_Translation_Start_Site|NLRP12_uc002qci.3_Missense_Mutation_p.L705V|NLRP12_uc002qcj.3_Missense_Mutation_p.L706V|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.L706V	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	705					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GCCGCTGCCAGATGTTCACTG	0.562			NA											11	35					0	0	0.001855	0	0
CNOT3	4849	broad.mit.edu	37	19	54647235	54647235	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:54647235G>A	uc002qdj.1	+	4	462	c.151G>A	c.(151-153)GAG>AAG	p.E51K	CNOT3_uc010yel.1_Missense_Mutation_p.E51K|CNOT3_uc002qdi.2_5'UTR|CNOT3_uc002qdk.1_Missense_Mutation_p.E51K|CNOT3_uc010ere.1_5'Flank	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	51					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CCTAAAGAAGGAGATTAAGAA	0.393			NA											18	77					0	0	0.007413	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56704299	56704299	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:56704299C>A	uc010ygh.1	-	1	123	c.123G>T	c.(121-123)GAG>GAT	p.E41D		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	41					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TGTGCCAAGTCTCAGGGTTCC	0.577			NA											9	16					3.09899e-07	4.54957e-07	0.004482	1	0
USP29	57663	broad.mit.edu	37	19	57641649	57641649	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:57641649A>G	uc002qny.2	+	4	1962	c.1606A>G	c.(1606-1608)AGT>GGT	p.S536G		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	536					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CAAATCTTTAAGTTTATCTTC	0.423			NA											3	247					0	0	0.004672	0	0
GREB1	9687	broad.mit.edu	37	2	11732998	11732998	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:11732998C>T	uc002rbk.1	+	11	1742	c.1442C>T	c.(1441-1443)GCG>GTG	p.A481V	GREB1_uc002rbo.1_Missense_Mutation_p.A115V	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	481						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		TACCAGCAGGCGCCGCCGCAG	0.731	Ovarian(39;850 945 2785 23371 33093)		NA											4	14					0	0	0.000602	0	0
ACTG2	72	broad.mit.edu	37	2	74146648	74146648	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:74146648C>A	uc002sjw.2	+	9	1199	c.1077C>A	c.(1075-1077)AGC>AGA	p.S359R	ACTG2_uc010fey.2_Missense_Mutation_p.S359R|ACTG2_uc010yrn.1_Missense_Mutation_p.S316R	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	359					muscle contraction	cytoskeleton|cytosol	ATP binding				0						TGTGGATCAGCAAGCCTGAGT	0.532			NA											27	80					8.24728e-16	1.60623e-15	0.004656	1	0
C2orf89	129293	broad.mit.edu	37	2	85051250	85051250	+	Silent	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:85051250C>T	uc010ysl.1	-	6	1250	c.1161G>A	c.(1159-1161)CCG>CCA	p.P387P	C2orf89_uc002sou.3_Silent_p.P338P	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	387	Extracellular (Potential).					integral to membrane				ovary(1)	1						CTTCTGGTGCCGGTACTTCCA	0.587			NA											7	27					0	0	0.004482	0	0
GPAT2	150763	broad.mit.edu	37	2	96687911	96687911	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:96687911C>A	uc002svf.2	-	22	2607	c.2384G>T	c.(2383-2385)AGC>ATC	p.S795I	LOC729234_uc010fht.2_Intron|GPAT2_uc002svd.2_Missense_Mutation_p.S614I|GPAT2_uc002sve.2_Missense_Mutation_p.S597I|GPAT2_uc002svg.2_Missense_Mutation_p.S674I|GPAT2_uc010yuh.1_Missense_Mutation_p.S724I|GPAT2_uc002svh.2_3'UTR	NM_207328	NP_997211	Q6NUI2	GPAT2_HUMAN	glycerol-3-phosphate acyltransferase 2,	795					glycerol-3-phosphate metabolic process|phospholipid biosynthetic process|triglyceride biosynthetic process	integral to membrane|mitochondrial outer membrane	glycerol-3-phosphate O-acyltransferase activity				0						ACAGTTCTAGCTACAAATGAA	0.552			NA											9	38					0.00829132	0.00981546	0.008291	1	0
SLC5A7	60482	broad.mit.edu	37	2	108604753	108604753	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:108604753G>T	uc002tdv.2	+	2	418	c.142G>T	c.(142-144)GAT>TAT	p.D48Y	SLC5A7_uc010ywm.1_5'UTR|SLC5A7_uc010fjj.2_Missense_Mutation_p.D48Y|SLC5A7_uc010ywn.1_Intron	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	48	Extracellular (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TGGTGGCCGAGATATTGGTTT	0.527			NA											11	60					1.58986e-06	2.21938e-06	0.008291	1	0
RANBP2	5903	broad.mit.edu	37	2	109383771	109383771	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:109383771G>T	uc002tem.3	+	20	6902	c.6776G>T	c.(6775-6777)CGT>CTT	p.R2259L		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	2259					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						AATCTTTTCCGTTTTGGTGAG	0.408			NA											80	507					4.21487e-37	9.69421e-37	0.00361	1	0
CNTNAP5	129684	broad.mit.edu	37	2	125232346	125232346	+	Nonsense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:125232346A>T	uc002tno.2	+	7	1313	c.949A>T	c.(949-951)AAA>TAA	p.K317*	CNTNAP5_uc010flu.2_Nonsense_Mutation_p.K317*	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	317	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		AGTACCAGGAAAACCTGGGAC	0.368			NA											7	22					0	0	0.001984	0	0
YSK4	80122	broad.mit.edu	37	2	135779380	135779380	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:135779380G>T	uc002tue.1	-	2	74	c.43C>A	c.(43-45)CTT>ATT	p.L15I	YSK4_uc010fne.1_5'UTR|YSK4_uc002tuf.1_Missense_Mutation_p.L15I|YSK4_uc010fnc.1_Missense_Mutation_p.L15I|YSK4_uc010fnd.1_Missense_Mutation_p.L15I|YSK4_uc010zbg.1_Missense_Mutation_p.L15I|YSK4_uc002tui.3_Missense_Mutation_p.L32I	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	15							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CAAATGTCAAGCAATGACTCA	0.338			NA											10	63					1.08611e-07	1.62412e-07	0.000978	1	0
LRP1B	53353	broad.mit.edu	37	2	141093256	141093256	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:141093256C>T	uc002tvj.1	-	78	13016	c.12044G>A	c.(12043-12045)GGC>GAC	p.G4015D		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4015	Extracellular (Potential).|LDL-receptor class B 34.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCAGTTGGGGCCATTCAGCTG	0.418	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			51	149					0	0	0.00361	0	0
KIF5C	3800	broad.mit.edu	37	2	149840154	149840154	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:149840154G>T	uc010zbu.1	+	15	1958	c.1590G>T	c.(1588-1590)CAG>CAT	p.Q530H	KIF5C_uc002tws.1_RNA|KIF5C_uc002twt.2_Missense_Mutation_p.Q82H	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	530					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		CAACCACACAGAGAGAGCTGA	0.413			NA											9	50					7.48243e-07	1.06608e-06	0.006214	1	0
C2orf77	129881	broad.mit.edu	37	2	170502572	170502572	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:170502572C>T	uc002ufe.2	-	9	1532	c.1438G>A	c.(1438-1440)GAA>AAA	p.E480K		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	480	Potential.										0						GATTCAAGTTCAATTACCTCT	0.413			NA											9	397					0	0	0.004482	0	0
ATP5G3	518	broad.mit.edu	37	2	176043042	176043042	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:176043042C>G	uc002ujz.3	-	4	673	c.403G>C	c.(403-405)GCT>CCT	p.A135P	ATP5G3_uc002uka.3_Missense_Mutation_p.A135P|ATP5G3_uc002ukb.1_3'UTR	NM_001002258	NP_001002258	P48201	AT5G3_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	135	Helical; (Potential).				ATP hydrolysis coupled proton transport|ATP synthesis coupled proton transport	integral to membrane|mitochondrial proton-transporting ATP synthase complex|proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity|lipid binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.147)			ATCAAGAAAGCAACCATCAAA	0.398	GBM(30;387 605 18606 28805 47989)		NA											15	110					0	0	0.003163	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801850	185801850	+	Missense_Mutation	SNP	A	A	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:185801850A>C	uc002uph.2	+	4	2321	c.1727A>C	c.(1726-1728)AAA>ACA	p.K576T		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	576						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CTAGATGAAAAATACAACAAA	0.303			NA											3	80					0	0	0.004672	0	0
COL3A1	1281	broad.mit.edu	37	2	189859522	189859522	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:189859522G>T	uc002uqj.1	+	20	1537	c.1420G>T	c.(1420-1422)GGT>TGT	p.G474C		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	474	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TGGAGAACCTGGTGCAAATGG	0.448			NA											12	93					7.93312e-07	1.12697e-06	0.00245	1	0
COL3A1	1281	broad.mit.edu	37	2	189873907	189873907	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:189873907C>G	uc002uqj.1	+	48	3900	c.3783C>G	c.(3781-3783)AAC>AAG	p.N1261K		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1261	Fibrillar collagen NC1.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CCGCTAGAAACTGCAGAGACC	0.403			NA											4	136					0	0	0.000248	0	0
SF3B1	23451	broad.mit.edu	37	2	198265462	198265462	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:198265462C>A	uc002uue.2	-	18	2743	c.2695G>T	c.(2695-2697)GCT>TCT	p.A899S		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	899					nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			TCTTGGAAAGCATAAAGAATA	0.313			NA											11	78					4.36969e-10	7.25279e-10	0.001855	1	0
ADAM23	8745	broad.mit.edu	37	2	207460798	207460798	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:207460798C>A	uc002vbq.2	+	24	2494	c.2271C>A	c.(2269-2271)TGC>TGA	p.C757*	ADAM23_uc010ziv.1_Intron	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	757	EGF-like.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		AAGCCACCTGCATTTGTGATT	0.433	Melanoma(194;1127 2130 19620 24042 27855)		NA											8	49					3.09899e-07	4.54957e-07	0.004482	1	0
PIKFYVE	200576	broad.mit.edu	37	2	209142361	209142361	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:209142361G>T	uc002vcz.2	+	5	700	c.542G>T	c.(541-543)CGA>CTA	p.R181L	PIKFYVE_uc010fun.1_Intron|PIKFYVE_uc002vcy.1_Missense_Mutation_p.R181L|PIKFYVE_uc002vcv.2_Intron|PIKFYVE_uc002vcw.2_Missense_Mutation_p.R181L|PIKFYVE_uc002vcx.2_Intron	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	181	FYVE-type.				cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						CACCATTGCCGACTATGTGGG	0.403			NA											34	121					2.42023e-17	4.8911e-17	0.003271	1	0
CPS1	1373	broad.mit.edu	37	2	211513216	211513216	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:211513216C>T	uc002vee.3	+	27	3488	c.3356C>T	c.(3355-3357)GCA>GTA	p.A1119V	CPS1_uc010fur.2_Missense_Mutation_p.A1125V|CPS1_uc010fus.2_Missense_Mutation_p.A668V	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1119	ATP-grasp 2.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		CTGGAATTTGCAAAGTCTGTG	0.323			NA											24	140					0	0	0.004656	0	0
OBSL1	23363	broad.mit.edu	37	2	220422763	220422763	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:220422763A>G	uc010fwk.2	-	11	3629	c.3572T>C	c.(3571-3573)GTG>GCG	p.V1191A	OBSL1_uc002vmh.1_Missense_Mutation_p.V182A|OBSL1_uc010zli.1_Missense_Mutation_p.V90A|OBSL1_uc010fwl.1_Missense_Mutation_p.V666A	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	1191	Ig-like 10.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		GCTCAGCACCACTGGCTCCCC	0.647			NA											5	36					0	0	0.000602	0	0
SCG2	7857	broad.mit.edu	37	2	224462975	224462975	+	Silent	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:224462975A>T	uc002vnm.2	-	2	1159	c.1026T>A	c.(1024-1026)CCT>CCA	p.P342P		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	342					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		GAGAATCAAGAGGTTTCTCAA	0.418			NA											19	152					0	0	0.007413	0	0
MFF	56947	broad.mit.edu	37	2	228205013	228205013	+	Silent	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:228205013A>T	uc002vos.2	+	6	853	c.435A>T	c.(433-435)CGA>CGT	p.R145R	MFF_uc002vot.2_Silent_p.R119R|MFF_uc002vou.2_Silent_p.R145R|MFF_uc002vov.2_Silent_p.R119R|MFF_uc002vow.2_Silent_p.R119R|MFF_uc002vox.2_Silent_p.R119R|MFF_uc002voy.2_Silent_p.R145R|MFF_uc002voz.2_Silent_p.R119R	NM_020194	NP_064579	Q9GZY8	MFF_HUMAN	mitochondrial fission factor	145	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane				large_intestine(1)	1						AACAGATCCGAGCAGTTGGCA	0.428			NA											14	55					0	0	0.00245	0	0
ATG16L1	55054	broad.mit.edu	37	2	234200895	234200895	+	Nonsense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:234200895C>T	uc002vty.2	+	15	1809	c.1552C>T	c.(1552-1554)CGA>TGA	p.R518*	ATG16L1_uc002vtx.1_Nonsense_Mutation_p.R355*|ATG16L1_uc002vua.2_Nonsense_Mutation_p.R499*|ATG16L1_uc002vub.2_Nonsense_Mutation_p.R376*|ATG16L1_uc002vtz.2_Nonsense_Mutation_p.R339*|ATG16L1_uc002vud.3_Nonsense_Mutation_p.R434*	NM_030803	NP_110430	Q676U5	A16L1_HUMAN	APG16 autophagy 16-like isoform 1	518	WD 5.				autophagic vacuole assembly|protein homooligomerization|protein transport	autophagic vacuole|pre-autophagosomal structure membrane	protein binding				0		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0539)		Epithelial(121;1.53e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000379)|LUSC - Lung squamous cell carcinoma(224;0.00619)|Lung(119;0.00732)|GBM - Glioblastoma multiforme(43;0.11)		TATTGATCTCCGAACAAATGC	0.502			NA											16	56					0	0	0.003163	0	0
AGAP1	116987	broad.mit.edu	37	2	236706518	236706518	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:236706518G>T	uc002vvs.2	+	7	1384	c.789G>T	c.(787-789)GTG>GTT	p.V263V	AGAP1_uc002vvt.2_Silent_p.V263V	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	263	Small GTPase-like.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						TGTCTGCCGTGCACATCAGCC	0.493			NA											42	205					1.62957e-23	3.61047e-23	0.00874	1	0
SIRPA	140885	broad.mit.edu	37	20	1895886	1895886	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:1895886C>A	uc002wfq.2	+	3	581	c.221C>A	c.(220-222)CCA>CAA	p.P74Q	SIRPA_uc010zps.1_Missense_Mutation_p.P54Q|SIRPA_uc002wfr.2_Missense_Mutation_p.P74Q|SIRPA_uc002wfs.2_Missense_Mutation_p.P74Q|SIRPA_uc002wft.2_Missense_Mutation_p.P74Q	NM_001040022	NP_001035111	P78324	SHPS1_HUMAN	signal-regulatory protein alpha precursor	74	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding			ovary(1)	1				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		GGAGCTGGACCAGGCCGGGAA	0.537	GBM(155;1668 1920 5945 42733 48121)		NA											20	100					1.55795e-14	2.92797e-14	0.001882	1	0
MCM8	84515	broad.mit.edu	37	20	5958578	5958578	+	Silent	SNP	C	C	T	rs113442872	byFrequency	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:5958578C>T	uc002wmi.2	+	13	1829	c.1452C>T	c.(1450-1452)ACC>ACT	p.T484T	MCM8_uc002wmj.2_Silent_p.T468T|MCM8_uc002wmk.2_Silent_p.T524T|MCM8_uc002wml.2_Silent_p.T484T|MCM8_uc010gbp.2_Silent_p.T437T|MCM8_uc002wmm.2_Silent_p.T22T	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	484	Thr-rich.|MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						CCACGACCACCTCTGGTCTGA	0.473			NA											15	59					0	0	0.003163	0	0
PLCB4	5332	broad.mit.edu	37	20	9374320	9374320	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:9374320A>T	uc002wnf.2	+	17	1545	c.1409A>T	c.(1408-1410)GAA>GTA	p.E470V	PLCB4_uc010gbw.1_Missense_Mutation_p.E470V|PLCB4_uc010gbx.2_Missense_Mutation_p.E470V|PLCB4_uc002wne.2_Missense_Mutation_p.E470V|PLCB4_uc002wnh.2_Missense_Mutation_p.E317V	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	470					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CCTGAAGTTGAAAAAAGTAAG	0.363			NA									OREG0025771	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	63					0	0	0.00278	0	0
PLCB4	5332	broad.mit.edu	37	20	9438112	9438112	+	Silent	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:9438112G>C	uc002wnf.2	+	32	3148	c.3012G>C	c.(3010-3012)ACG>ACC	p.T1004T	PLCB4_uc010gbw.1_Silent_p.T1004T|PLCB4_uc010gbx.2_Silent_p.T1016T|PLCB4_uc002wne.2_Silent_p.T1004T|PLCB4_uc002wnh.2_Silent_p.T851T	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	1004					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AAATTCAGACGCTGACATCAG	0.348			NA											15	73					0	0	0.006122	0	0
KIF16B	55614	broad.mit.edu	37	20	16352333	16352333	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:16352333T>A	uc002wpg.1	-	21	3582	c.3424A>T	c.(3424-3426)AGT>TGT	p.S1142C	KIF16B_uc002wpe.1_Missense_Mutation_p.S524C|KIF16B_uc002wpf.1_Missense_Mutation_p.S524C|KIF16B_uc010gch.1_Missense_Mutation_p.S1091C|KIF16B_uc010gci.1_Missense_Mutation_p.S1142C	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	1142					cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						GCAGATGTACTGCAGCCTTCA	0.368			NA											26	61					0	0	0.00632	0	0
ZNF133	7692	broad.mit.edu	37	20	18297153	18297153	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:18297153G>T	uc010gcq.2	+	5	1963	c.1658G>T	c.(1657-1659)AGG>ATG	p.R553M	ZNF133_uc010zrv.1_Missense_Mutation_p.R556M|ZNF133_uc010zrw.1_Missense_Mutation_p.R490M|ZNF133_uc010gcr.2_Missense_Mutation_p.R553M|ZNF133_uc010zrx.1_Missense_Mutation_p.R458M|ZNF133_uc002wql.3_Missense_Mutation_p.R552M|ZNF133_uc010gcs.2_Missense_Mutation_p.R552M|ZNF133_uc010zry.1_Missense_Mutation_p.R458M|ZNF133_uc002wqm.2_Missense_Mutation_p.R553M	NM_003434	NP_003425	P52736	ZN133_HUMAN	zinc finger protein 133	553	C2H2-type 13.					nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)	2						TACATGTGCAGGCAGTGTGGA	0.582			NA											11	73					0.00010058	0.000129202	0.001368	1	0
PTPRT	11122	broad.mit.edu	37	20	41306576	41306576	+	Silent	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:41306576G>C	uc002xkg.2	-	7	1267	c.1083C>G	c.(1081-1083)CTC>CTG	p.L361L	PTPRT_uc010ggj.2_Silent_p.L361L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	361	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTCGTGTGAGGAGCACTCGGA	0.572			NA											8	138					0	0	0.004482	0	0
JPH2	57158	broad.mit.edu	37	20	42815287	42815288	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:42815287_42815288CC>AA	uc002xli.1	-	1	931_932	c.58_59GG>TT	c.(58-60)GGG>TTG	p.G20L	JPH2_uc002xlj.2_Missense_Mutation_p.G20L	NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	20	MORN 1.|Gly-rich.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GGCCTTTCCCCCCTCCCAGCCC	0.629			NA											13	32					0	0	0.004672	0	0
EYA2	2139	broad.mit.edu	37	20	45633640	45633640	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:45633640C>A	uc002xsm.2	+	4	589	c.215C>A	c.(214-216)ACG>AAG	p.T72K	EYA2_uc010ghp.2_Missense_Mutation_p.T72K|EYA2_uc002xsn.2_Missense_Mutation_p.T77K|EYA2_uc002xso.2_Missense_Mutation_p.T72K|EYA2_uc002xsp.2_Missense_Mutation_p.T72K|EYA2_uc002xsq.2_Missense_Mutation_p.T72K	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	72					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				TACGGCCAGACGCAGTACAGT	0.562	Pancreas(120;56 1725 18501 25218 43520)		NA											31	137					3.57733e-08	5.43349e-08	0.001786	1	0
SNAI1	6615	broad.mit.edu	37	20	48600678	48600678	+	Nonsense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:48600678C>T	uc002xuz.2	+	2	470	c.400C>T	c.(400-402)CAA>TAA	p.Q134*		NM_005985	NP_005976	O95863	SNAI1_HUMAN	snail 1 homolog	134	Required for FBXL14-triggered degradation.				epithelial to mesenchymal transition|mesoderm formation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	kinase binding|zinc ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			AGGCTTGGGCCAAGTGCCCAA	0.607			NA											23	74					0	0	0.001882	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871779	51871780	+	Missense_Mutation	DNP	GG	GG	AT			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:51871779_51871780GG>AT	uc002xwo.2	+	2	2738_2739	c.1782_1783GG>AT	c.(1780-1785)CTGGCC>CTATCC	p.A595S		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	595					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CCACACACCTGGCCCCTTACAC	0.515			NA											29	150					0	0	0.004672	0	0
DIDO1	11083	broad.mit.edu	37	20	61528277	61528277	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:61528277C>A	uc002ydr.1	-	7	1924	c.1660G>T	c.(1660-1662)GGC>TGC	p.G554C	DIDO1_uc002yds.1_Missense_Mutation_p.G554C|DIDO1_uc002ydt.1_Missense_Mutation_p.G554C|DIDO1_uc002ydu.1_Missense_Mutation_p.G554C	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	554					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					ACCGCGGAGCCTGGAGGGGCT	0.552	Melanoma(25;381 482 3385 5362 7955 17159 17174 40604 47095)		NA											8	57					2.17888e-05	2.89917e-05	0.006214	1	0
RTEL1	51750	broad.mit.edu	37	20	62292695	62292695	+	Silent	SNP	G	G	C	rs114124243	by1000genomes	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr20:62292695G>C	uc002yfu.1	+	3	490	c.147G>C	c.(145-147)ACG>ACC	p.T49T	RTEL1_uc011abc.1_RNA|RTEL1_uc002yft.1_Silent_p.T49T|RTEL1_uc011abd.1_Silent_p.T49T|RTEL1_uc002yfv.2_Silent_p.T49T|RTEL1_uc011abe.1_5'UTR|RTEL1_uc002yfw.2_RNA	NM_016434	NP_057518	Q9NZ71	RTEL1_HUMAN	regulator of telomere elongation helicase 1	49	Helicase ATP-binding.|ATP (Probable).				DNA repair|regulation of double-strand break repair via homologous recombination|telomere maintenance	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding				0	all_cancers(38;6.47e-12)|all_epithelial(29;3.75e-13)		Epithelial(9;1.25e-09)|all cancers(9;5.13e-09)|BRCA - Breast invasive adenocarcinoma(10;7.26e-05)|OV - Ovarian serous cystadenocarcinoma(5;0.00223)|Colorectal(105;0.107)			CAGGGAAGACGCTGTGCCTGC	0.627			NA											13	52					0	0	0.003163	0	0
LIPI	149998	broad.mit.edu	37	21	15561488	15561488	+	Nonsense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr21:15561488A>T	uc002yjm.2	-	2	372	c.362T>A	c.(361-363)TTG>TAG	p.L121*	LIPI_uc010gkw.1_Nonsense_Mutation_p.L54*	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	100					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		TTCATTCAGCAAAATCCTTAC	0.373			NA											8	61					0	0	0.00308	0	0
SAMSN1	64092	broad.mit.edu	37	21	15872992	15872992	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr21:15872992T>C	uc002yju.1	-	6	708	c.626A>G	c.(625-627)AAT>AGT	p.N209S	SAMSN1_uc010gky.1_Missense_Mutation_p.N41S|SAMSN1_uc002yjv.1_Missense_Mutation_p.N277S	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	209	SH3.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		TCCCACTTTATTGTTCAACAT	0.383			NA											23	130					0	0	0.002299	0	0
USP16	10600	broad.mit.edu	37	21	30403014	30403014	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr21:30403014G>T	uc002ymy.2	+	3	362	c.160G>T	c.(160-162)GAC>TAC	p.D54Y	USP16_uc002ymx.2_Missense_Mutation_p.D54Y|USP16_uc002ymw.2_Missense_Mutation_p.D54Y|USP16_uc011acm.1_Missense_Mutation_p.D40Y|USP16_uc011acn.1_Intron	NM_006447	NP_006438	Q9Y5T5	UBP16_HUMAN	ubiquitin specific protease 16 isoform a	54					cell division|histone deubiquitination|mitosis|positive regulation of transcription, DNA-dependent|protein homotetramerization|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|histone binding|transcription coactivator activity|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(2)|breast(1)|pancreas(1)	4						CTGTAAGACTGACAATAAAGT	0.373	Melanoma(92;625 1444 27493 34101 44971)		NA											11	66					0.00136819	0.00166458	0.001368	1	0
KRTAP15-1	254950	broad.mit.edu	37	21	31812741	31812741	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr21:31812741C>G	uc002yod.2	+	1	96	c.96C>G	c.(94-96)AGC>AGG	p.S32R		NM_181623	NP_853654	Q3LI76	KR151_HUMAN	keratin associated protein 15-1	32						intermediate filament					0						TCTACCCCAGCAATGCCATCT	0.478			NA											18	96					0	0	0.00499	0	0
PCNT	5116	broad.mit.edu	37	21	47783460	47783460	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr21:47783460G>A	uc002zji.3	+	14	2327	c.2220G>A	c.(2218-2220)CTG>CTA	p.L740L	PCNT_uc002zjj.2_Silent_p.L622L	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	740	Glu-rich.|Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					AGACTGAGCTGATGAAACAGG	0.388			NA											39	137					0	0	0.004289	0	0
MED15	51586	broad.mit.edu	37	22	20922826	20922826	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:20922826G>T	uc002zsp.2	+	8	1140	c.1060G>T	c.(1060-1062)GTG>TTG	p.V354L	MED15_uc002zsq.2_Missense_Mutation_p.V354L|MED15_uc010gso.2_Missense_Mutation_p.V354L|MED15_uc002zsr.2_Missense_Mutation_p.V328L|MED15_uc011ahs.1_Missense_Mutation_p.V328L|MED15_uc002zss.2_Missense_Mutation_p.V273L|MED15_uc011ahu.1_Missense_Mutation_p.V80L	NM_001003891	NP_001003891	Q96RN5	MED15_HUMAN	mediator complex subunit 15 isoform a	354	Pro-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|mediator complex	protein binding			skin(1)	1	all_cancers(11;2.07e-24)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)|Epithelial(17;0.209)			TCCGATGGTGGTGCAGCAGCC	0.597			NA											4	27					1.23904e-05	1.66701e-05	0.000602	1	0
PI4KA	5297	broad.mit.edu	37	22	21178643	21178643	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:21178643C>A	uc002zsz.3	-	4	484	c.253G>T	c.(253-255)GCC>TCC	p.A85S	PI4KA_uc010gsq.1_Missense_Mutation_p.A143S	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	85					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			TCCCTATAGGCCACATCAGAC	0.433	GBM(136;1332 1831 3115 23601 50806)		NA											6	59					0.00307968	0.00370021	0.00308	1	0
LZTR1	8216	broad.mit.edu	37	22	21343151	21343151	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:21343151G>T	uc002zto.2	+	6	686	c.583G>T	c.(583-585)GGC>TGC	p.G195C	LZTR1_uc002ztn.2_Missense_Mutation_p.G154C|LZTR1_uc011ahy.1_Missense_Mutation_p.G176C|LZTR1_uc010gsr.1_Missense_Mutation_p.G66C	NM_006767	NP_006758	Q8N653	LZTR1_HUMAN	leucine-zipper-like transcription regulator 1	195	Kelch 3.				anatomical structure morphogenesis		sequence-specific DNA binding transcription factor activity			ovary(2)|lung(2)	4	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			TGGCTATGACGGCAACGCCAG	0.637			NA											29	86					1.39806e-14	2.63774e-14	0.008361	1	0
TPST2	8459	broad.mit.edu	37	22	26937214	26937214	+	Missense_Mutation	SNP	A	A	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:26937214A>C	uc003acv.2	-	2	551	c.383T>G	c.(382-384)GTG>GGG	p.V128G	TPST2_uc003acw.2_Missense_Mutation_p.V128G|TPST2_uc003acx.2_Missense_Mutation_p.V128G|TPST2_uc011akf.1_Missense_Mutation_p.V128G	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	128	Lumenal (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						CTCATCCGTCACCCCCGCCTC	0.672			NA											7	17					0	0	0.00499	0	0
EWSR1	2130	broad.mit.edu	37	22	29664333	29664333	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:29664333C>T	uc003aet.2	+	1	336	c.8C>T	c.(7-9)TCC>TTC	p.S3F	RHBDD3_uc003aeq.1_5'Flank|RHBDD3_uc003aer.1_5'Flank|EWSR1_uc003aes.3_Missense_Mutation_p.S3F|EWSR1_uc003aev.2_Missense_Mutation_p.S3F|EWSR1_uc003aew.2_Missense_Mutation_p.S3F|EWSR1_uc003aex.2_Missense_Mutation_p.S3F	NM_005243	NP_005234	Q01844	EWS_HUMAN	Ewing sarcoma breakpoint region 1 isoform 2	3	EAD (Gln/Pro/Thr-rich).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	calmodulin binding|nucleotide binding|RNA binding|zinc ion binding		EWSR1/FLI1(2266)|EWSR1/ATF1(323)|EWSR1/WT1(231)|EWSR1/ERG(162)|EWSR1/NR4A3(140)|EWSR1/DDIT3(43)|EWSR1/CREB1(42)|EWSR1/FEV(10)|EWSR1/POU5F1(10)|EWSR1/ETV1(7)|EWSR1/ETV4(6)|EWSR1/ZNF384(4)|EWSR1/PBX1(3)|EWSR1/SP3(3)|EWSR1/PATZ1(2)	bone(2526)|soft_tissue(702)|skin(8)|autonomic_ganglia(4)|haematopoietic_and_lymphoid_tissue(4)|salivary_gland(2)|central_nervous_system(2)|NS(2)|pancreas(2)|lung(1)|ovary(1)	3254						AAAATGGCGTCCACGGGTGAG	0.483			NA	T	FLI1|ERG|ZNF278|NR4A3|FEV|ATF1|ETV1|ETV4|WT1|ZNF384|CREB1|POU5F1| PBX1	Ewing sarcoma| desmoplastic small round cell tumor |ALL|clear cell sarcoma|sarcoma|myoepithelioma								5	214					0	0	0.001168	0	0
AP1B1	162	broad.mit.edu	37	22	29737726	29737726	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:29737726C>A	uc003afj.2	-	13	1744	c.1560G>T	c.(1558-1560)CGG>CGT	p.R520R	AP1B1_uc003afi.2_Silent_p.R520R|AP1B1_uc003afk.2_Silent_p.R520R|AP1B1_uc003afl.2_Silent_p.R520R|AP1B1_uc011ako.1_Silent_p.R73R	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	520					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						AGCCACGGTCCCGCAGGTCTG	0.597			NA											8	47					0.000157383	0.00020057	0.00308	1	0
OSBP2	23762	broad.mit.edu	37	22	31285535	31285535	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:31285535G>A	uc003aiy.1	+	7	1639	c.1535G>A	c.(1534-1536)CGC>CAC	p.R512H	OSBP2_uc011ala.1_Missense_Mutation_p.R346H|OSBP2_uc010gwc.1_Missense_Mutation_p.R339H|OSBP2_uc011alb.1_Intron|OSBP2_uc003aiz.1_Missense_Mutation_p.R511H|OSBP2_uc003aja.1_Missense_Mutation_p.R145H|OSBP2_uc011alc.1_Missense_Mutation_p.R254H|OSBP2_uc003ajb.2_Missense_Mutation_p.R57H|OSBP2_uc011ald.1_Missense_Mutation_p.R56H|OSBP2_uc010gwd.1_Missense_Mutation_p.R57H	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	512					lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						AGGCGAGTCCGCATTCCCAAC	0.597			NA											5	199					0	0	0.000602	0	0
SYN3	8224	broad.mit.edu	37	22	33260992	33260992	+	Splice_Site	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:33260992C>A	uc003amx.2	-	5	781	c.622_splice	c.e5-1	p.F208_splice	SYN3_uc003amy.2_Splice_Site_p.F208_splice|SYN3_uc003amz.2_Splice_Site_p.F207_splice	NM_003490	NP_003481	O14994	SYN3_HUMAN	synapsin III isoform IIIa						neurotransmitter secretion	cell junction|synaptic vesicle membrane	ATP binding|ligase activity			skin(1)	1						GCTGAGAGAACTAGGATAGAA	0.473			NA											25	150					6.12954e-19	1.28163e-18	0.004656	1	0
APOL4	80832	broad.mit.edu	37	22	36587606	36587606	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:36587606G>C	uc003aox.2	-	6	798	c.573C>G	c.(571-573)ATC>ATG	p.I191M	APOL4_uc003aow.2_Missense_Mutation_p.I188M|APOL4_uc010gww.2_Missense_Mutation_p.I33M	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	191					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						TGTTCTCCACGATGCTGGAGG	0.547			NA											10	23					0	0	0.006214	0	0
CBX6	23466	broad.mit.edu	37	22	39262426	39262426	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:39262426C>A	uc003awl.2	-	5	1090	c.1027G>T	c.(1027-1029)GCC>TCC	p.A343S		NM_014292	NP_055107	O95503	CBX6_HUMAN	chromobox homolog 6	343					chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	PcG protein complex					0	Melanoma(58;0.04)					GGCTCAGGGGCCGTGGGAGGT	0.716			NA											7	29					8.12818e-05	0.000105252	0.001984	1	0
MPPED1	758	broad.mit.edu	37	22	43821177	43821177	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr22:43821177C>A	uc011apv.1	+	2	409	c.186C>A	c.(184-186)AAC>AAA	p.N62K	MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Missense_Mutation_p.N62K|MPPED1_uc011apz.1_Missense_Mutation_p.N95K	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	62							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				CCTTCTACAACATCAACCAGG	0.662			NA											7	34					1.76689e-08	2.72655e-08	0.006214	1	0
NUP210	23225	broad.mit.edu	37	3	13417095	13417095	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:13417095T>A	uc003bxv.1	-	11	1423	c.1340A>T	c.(1339-1341)GAG>GTG	p.E447V	NUP210_uc003bxx.2_Missense_Mutation_p.E119V	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	447	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					AATTTCCACCTCCTGCTGGTT	0.527			NA											27	121					0	0	0.002096	0	0
GALNTL2	117248	broad.mit.edu	37	3	16268973	16268973	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:16268973G>A	uc003car.3	+	10	2361	c.1886G>A	c.(1885-1887)CGT>CAT	p.R629H	GALNTL2_uc003caq.3_Missense_Mutation_p.R362H|GALNTL2_uc003cas.3_Missense_Mutation_p.R159H	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	629	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CAGCAGTGGCGTTTTGACCAG	0.443			NA											9	77					0	0	0.001368	0	0
ZNF385D	79750	broad.mit.edu	37	3	21606170	21606170	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:21606170G>T	uc003cce.2	-	3	580	c.172C>A	c.(172-174)CCG>ACG	p.P58T	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	58						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						TTCTGAATCGGGTCCATCTGT	0.358			NA											13	57					4.3838e-07	6.33945e-07	0.001855	1	0
CYP8B1	1582	broad.mit.edu	37	3	42916116	42916116	+	Missense_Mutation	SNP	G	G	T	rs141302264		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:42916116G>T	uc003cmh.2	-	1	1518	c.1193C>A	c.(1192-1194)CCT>CAT	p.P398H	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.P398H	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	398					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		GGTGGGCTCAGGGTGGATGTC	0.547			NA											34	142					1.67305e-13	3.10801e-13	0.00623	1	0
KIF15	56992	broad.mit.edu	37	3	44867888	44867888	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:44867888G>T	uc003cnx.3	+	22	2871	c.2722G>T	c.(2722-2724)GCA>TCA	p.A908S	KIF15_uc010hiq.2_Missense_Mutation_p.A811S|KIF15_uc010hir.2_5'UTR	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	908	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		GCTTCTTGAGGCAGAAAAAGA	0.254			NA											8	46					7.48243e-07	1.06608e-06	0.006214	1	0
FBXW12	285231	broad.mit.edu	37	3	48416855	48416855	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:48416855G>T	uc003csr.2	+	5	484	c.298G>T	c.(298-300)GAG>TAG	p.E100*	FBXW12_uc010hjv.2_Nonsense_Mutation_p.E81*|FBXW12_uc003css.2_Nonsense_Mutation_p.E100*|FBXW12_uc010hjw.2_Nonsense_Mutation_p.E21*	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	100	WD 1.										0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ATTTGAGACGGAGTTGGCTTA	0.393			NA											9	69					9.70103e-10	1.58297e-09	0.008291	1	0
BSN	8927	broad.mit.edu	37	3	49694474	49694474	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:49694474G>A	uc003cxe.3	+	5	7599	c.7485G>A	c.(7483-7485)TTG>TTA	p.L2495L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2495					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CTGCTGAGTTGGCCCAGAATG	0.527			NA											8	32					0	0	0.00308	0	0
CACNA1D	776	broad.mit.edu	37	3	53752403	53752403	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:53752403G>T	uc003dgv.3	+	10	1629	c.1466G>T	c.(1465-1467)TGT>TTT	p.C489F	CACNA1D_uc003dgu.3_Missense_Mutation_p.C489F|CACNA1D_uc003dgy.3_Missense_Mutation_p.C489F|CACNA1D_uc003dgw.3_Missense_Mutation_p.C136F	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	489	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CGAGGCTGCTGTGGAAGTCTC	0.597			NA											4	50					0.00024832	0.000313975	0.000248	1	0
WNT5A	7474	broad.mit.edu	37	3	55504432	55504433	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:55504432_55504433CC>AA	uc003dhn.2	-	5	1148_1149	c.830_831GG>TT	c.(829-831)CGG>CTT	p.R277L	WNT5A_uc003dhm.2_Missense_Mutation_p.R262L|WNT5A_uc010hmw.2_Missense_Mutation_p.R262L|WNT5A_uc010hmx.2_Missense_Mutation_p.R188L	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	277					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		GGCTGTTGAGCCGCATGGCCGC	0.614			NA											3	18					0	0	0.004672	0	0
FAM55C	91775	broad.mit.edu	37	3	101520396	101520396	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:101520396G>T	uc003dvn.2	+	5	1048	c.411G>T	c.(409-411)AAG>AAT	p.K137N	FAM55C_uc010hpn.2_Missense_Mutation_p.K137N	NM_145037	NP_659474	Q969Y0	FA55C_HUMAN	hypothetical protein LOC91775 precursor	137						extracellular region				ovary(1)|pancreas(1)|skin(1)	3						GAAAGCCCAAGAAGTATGGTG	0.512			NA											11	65					3.86212e-05	5.08284e-05	0.008291	1	0
C3orf27	23434	broad.mit.edu	37	3	128292497	128292497	+	Missense_Mutation	SNP	C	C	T	rs141693917		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:128292497C>T	uc003ekq.2	-	3	1043	c.76G>A	c.(76-78)GTC>ATC	p.V26I		NM_007354	NP_031380	O15544	GR6_HUMAN	putative GR6 protein	26											0				GBM - Glioblastoma multiforme(114;0.176)		AGGCGGGAGACGCTGAGTCTA	0.592			NA											10	28					0	0	0.000978	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142567310	142567310	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:142567310G>T	uc003evd.2	-	3	393	c.197C>A	c.(196-198)CCC>CAC	p.P66H		NM_013363	NP_037495	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	66	CUB 1.					extracellular region	collagen binding|heparin binding|peptidase activator activity			ovary(2)|skin(1)	3						TTTTCCTTCGGGAACCTGCCA	0.413			NA											21	63					8.04996e-18	1.66159e-17	0.001882	1	0
TM4SF1	4071	broad.mit.edu	37	3	149093324	149093324	+	Missense_Mutation	SNP	A	A	T	rs140811683		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:149093324A>T	uc003exb.1	-	3	553	c.319T>A	c.(319-321)TGT>AGT	p.C107S	TM4SF1_uc003exc.1_Missense_Mutation_p.C18S	NM_014220	NP_055035	P30408	T4S1_HUMAN	transmembrane 4 superfamily member 1	107	Helical; (Probable).					integral to plasma membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			ACAATGACACAGTAGCCAGAT	0.512			NA											8	56					0	0	0.00308	0	0
FAM194A	131831	broad.mit.edu	37	3	150421307	150421307	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:150421307G>C	uc003eyg.2	-	1	436	c.379C>G	c.(379-381)CCC>GCC	p.P127A	FAM194A_uc003eyh.2_Intron	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	127										skin(2)|ovary(1)	3						GTGCTGGAGGGTGGGCTTGCG	0.667			NA											7	55					0	0	0.001984	0	0
IGSF10	285313	broad.mit.edu	37	3	151176498	151176499	+	Splice_Site	DNP	CC	CC	AT			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:151176498_151176499CC>AT	uc011bod.1	-	1	1	c.1_splice	c.e1-1	p.M1_splice		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor						cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTACCTTCATCCTGAAAAAACA	0.535			NA											9	37					0	0	0.004672	0	0
SKIL	6498	broad.mit.edu	37	3	170078605	170078605	+	Missense_Mutation	SNP	A	A	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:170078605A>C	uc003fgu.2	+	2	1198	c.486A>C	c.(484-486)GAA>GAC	p.E162D	SKIL_uc011bps.1_Missense_Mutation_p.E142D|SKIL_uc003fgv.2_Missense_Mutation_p.E162D|SKIL_uc003fgw.2_Missense_Mutation_p.E162D	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	162					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			TTGGAGGAGAAAAGAGACTCT	0.408			NA											3	134					0	0	0.000248	0	0
TNIK	23043	broad.mit.edu	37	3	170858245	170858245	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:170858245C>A	uc003fhh.2	-	13	1620	c.1275G>T	c.(1273-1275)CGG>CGT	p.R425R	TNIK_uc003fhi.2_Silent_p.R425R|TNIK_uc003fhj.2_Silent_p.R425R|TNIK_uc003fhk.2_Silent_p.R425R|TNIK_uc003fhl.2_Silent_p.R425R|TNIK_uc003fhm.2_Silent_p.R425R|TNIK_uc003fhn.2_Silent_p.R425R|TNIK_uc003fho.2_Silent_p.R425R	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	425	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			CCTCATAGTGCCGGCGCTGCT	0.652			NA											40	181					5.44703e-19	1.14887e-18	0.002222	1	0
DVL3	1857	broad.mit.edu	37	3	183885372	183885372	+	Silent	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr3:183885372A>T	uc003fms.2	+	12	1343	c.1203A>T	c.(1201-1203)CTA>CTT	p.L401L	DVL3_uc011bqw.1_Silent_p.L384L|DVL3_uc003fmt.2_Silent_p.L72L|DVL3_uc003fmu.2_Silent_p.L233L	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	401					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CCCCAGGCCTAGACGACTTCC	0.328			NA											7	32					0	0	0.00308	0	0
PDE6B	5158	broad.mit.edu	37	4	647771	647771	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:647771C>A	uc003gap.2	+	4	895	c.842C>A	c.(841-843)ACC>AAC	p.T281N	PDE6B_uc003gao.3_Missense_Mutation_p.T281N|PDE6B_uc011buy.1_Missense_Mutation_p.T2N|PDE6B_uc010ibg.2_Missense_Mutation_p.T2N|uc003gaq.1_Intron	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	281	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						CTGGACATGACCAAGGAGAAG	0.652	GBM(71;463 1194 9848 25922 46834)		NA											8	61					1.06961e-07	1.61445e-07	0.00308	1	0
KIAA1530	57654	broad.mit.edu	37	4	1343559	1343559	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:1343559G>T	uc003gde.3	+	3	793	c.346G>T	c.(346-348)GCC>TCC	p.A116S		NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	116											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			GACCACCCGGGCCGTGGAAGG	0.632			NA											9	46					9.70103e-10	1.58297e-09	0.008291	1	0
HAUS3	79441	broad.mit.edu	37	4	2238091	2238091	+	Missense_Mutation	SNP	T	T	C	rs150101454		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:2238091T>C	uc003ges.1	-	4	1672	c.1442A>G	c.(1441-1443)AAT>AGT	p.N481S	POLN_uc011bvi.1_Intron|HAUS3_uc011bvj.1_Intron|HAUS3_uc003get.1_Missense_Mutation_p.N481S	NM_024511	NP_078787	Q68CZ6	HAUS3_HUMAN	HAUS augmin-like complex, subunit 3	481	Potential.				cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle				large_intestine(2)|breast(2)	4						TAAAGAAATATTCTGTTTCAA	0.368			NA											22	66					0	0	0.00333	0	0
FAM193A	8603	broad.mit.edu	37	4	2661632	2661632	+	Silent	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:2661632A>T	uc010icl.2	+	8	1074	c.723A>T	c.(721-723)CCA>CCT	p.P241P	FAM193A_uc010ick.2_Silent_p.P441P|FAM193A_uc003gfd.2_Silent_p.P241P|FAM193A_uc011bvm.1_Silent_p.P265P|FAM193A_uc011bvn.1_Silent_p.P241P|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Silent_p.P95P	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	241										ovary(3)	3						ACCAGCTCCCACTTCAAGTGG	0.557			NA											21	87					0	0	0.008871	0	0
LRRC66	339977	broad.mit.edu	37	4	52860731	52860731	+	Silent	SNP	C	C	A	rs137931708	by1000genomes	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:52860731C>A	uc003gzi.2	-	4	2470	c.2457G>T	c.(2455-2457)CCG>CCT	p.P819P		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	819						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TGAACATGCCCGGAAACTCAT	0.468			NA											13	71					1.61879e-10	2.74343e-10	0.001368	1	0
YTHDC1	91746	broad.mit.edu	37	4	69195782	69195782	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:69195782C>A	uc003hdx.2	-	9	1640	c.1287G>T	c.(1285-1287)GTG>GTT	p.V429V	YTHDC1_uc003hdy.2_Silent_p.V411V	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	429	YTH.									upper_aerodigestive_tract(1)|ovary(1)	2						CTGCTGGAAGCACCCAGTGTA	0.353			NA											19	97					1.56452e-12	2.78843e-12	0.007413	1	0
FAT4	79633	broad.mit.edu	37	4	126370833	126370833	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:126370833G>C	uc003ifj.3	+	9	8662	c.8662G>C	c.(8662-8664)GGC>CGC	p.G2888R	FAT4_uc011cgp.1_Missense_Mutation_p.G1186R|FAT4_uc003ifi.1_Missense_Mutation_p.G366R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2888	Cadherin 28.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TACTGAGATTGGCTCCAAAGT	0.353			NA											17	124					0	0	0.006122	0	0
PCDH18	54510	broad.mit.edu	37	4	138453002	138453002	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:138453002C>A	uc003ihe.3	-	1	628	c.241G>T	c.(241-243)GAG>TAG	p.E81*	PCDH18_uc003ihf.3_Nonsense_Mutation_p.E74*|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	81	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CCATTATCCTCGTTTACTACA	0.428			NA											25	153					4.26978e-12	7.52665e-12	0.00333	1	0
FGB	2244	broad.mit.edu	37	4	155490895	155490895	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:155490895C>A	uc003ioa.3	+	7	1227	c.1188C>A	c.(1186-1188)ACC>ACA	p.T396T	FGB_uc003iob.3_Intron|FGB_uc010ipv.2_Silent_p.T334T|FGB_uc010ipw.2_Intron|FGB_uc003ioc.3_Silent_p.T177T	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	396	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	AAAACAGGACCATGACCATTC	0.458	NSCLC(106;1133 1613 21870 46110 52656)		NA											25	91					4.7796e-09	7.5197e-09	0.004656	1	0
LRAT	9227	broad.mit.edu	37	4	155670176	155670176	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:155670176G>T	uc003iom.1	+	2	908	c.581G>T	c.(580-582)AGT>ATT	p.S194I	LRAT_uc003ion.1_Missense_Mutation_p.S194I	NM_004744	NP_004735	O95237	LRAT_HUMAN	lecithin retinol acyltransferase	194	Cytoplasmic (By similarity).				response to stimulus|retinoid metabolic process|steroid metabolic process|visual perception	endoplasmic reticulum membrane|integral to membrane|multivesicular body|perinuclear region of cytoplasm|rough endoplasmic reticulum	phosphatidylcholine-retinol O-acyltransferase activity			central_nervous_system(1)	1	all_hematologic(180;0.215)	Renal(120;0.0458)			Vitamin A(DB00162)	GATCAGAGAAGTGTTCTTGCT	0.383			NA											15	121					3.27435e-08	5.00479e-08	0.00245	1	0
FSTL5	56884	broad.mit.edu	37	4	162380417	162380417	+	Nonsense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:162380417G>A	uc003iqh.2	-	14	2099	c.1663C>T	c.(1663-1665)CAG>TAG	p.Q555*	FSTL5_uc003iqi.2_Nonsense_Mutation_p.Q554*|FSTL5_uc010iqv.2_Nonsense_Mutation_p.Q545*	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	555						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		ACCCAGACCTGATCATGTGAT	0.358			NA											13	70					0	0	0.00245	0	0
KIAA1712	80817	broad.mit.edu	37	4	175237375	175237375	+	Silent	SNP	A	A	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:175237375A>C	uc003itr.2	+	10	1434	c.1020A>C	c.(1018-1020)ACA>ACC	p.T340T	KIAA1712_uc010iro.2_Silent_p.T340T|KIAA1712_uc003its.2_RNA	NM_001040157	NP_001035247	Q9C0F1	CEP44_HUMAN	HBV PreS1-transactivated protein 3 isoform a	340						centrosome|midbody|spindle pole					0		Prostate(90;0.00276)|Melanoma(52;0.0179)|Renal(120;0.0376)|Breast(14;0.0991)|all_hematologic(60;0.124)|all_neural(102;0.196)		all cancers(43;4.06e-18)|Epithelial(43;1.18e-15)|OV - Ovarian serous cystadenocarcinoma(60;4.65e-09)|GBM - Glioblastoma multiforme(59;0.00098)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0949)		GCTATAGTACAGCATCATCAG	0.373			NA											29	150					0	0	0.002096	0	0
ASB5	140458	broad.mit.edu	37	4	177142368	177142368	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:177142368G>A	uc003iuq.1	-	5	624	c.608C>T	c.(607-609)ACT>ATT	p.T203I	ASB5_uc003iup.1_Missense_Mutation_p.T150I	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	203	ANK 5.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		ATAGAGAGGAGTTCCCAAATG	0.408			NA											20	65					0	0	0.008871	0	0
TRIML2	205860	broad.mit.edu	37	4	189012705	189012705	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr4:189012705C>G	uc003izl.2	-	7	1022	c.986G>C	c.(985-987)GGG>GCG	p.G329A	TRIML2_uc003izj.1_Missense_Mutation_p.G157A|TRIML2_uc003izk.1_Missense_Mutation_p.G137A|TRIML2_uc011cle.1_Missense_Mutation_p.G404A	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	329	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TGATATCTGCCCGTGTTCGCA	0.507			NA											38	176					0	0	0.006999	0	0
DNAH5	1767	broad.mit.edu	37	5	13864666	13864666	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:13864666C>A	uc003jfd.2	-	28	4478	c.4436G>T	c.(4435-4437)TGT>TTT	p.C1479F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1479	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGCGGGCAACACTCGCTGAA	0.527			NA							Kartagener_syndrome				28	60					1.77063e-15	3.3803e-15	0.005443	1	0
MYO10	4651	broad.mit.edu	37	5	16672820	16672820	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:16672820C>A	uc003jft.3	-	37	5755	c.5287G>T	c.(5287-5289)GAT>TAT	p.D1763Y	MYO10_uc011cnb.1_Missense_Mutation_p.D392Y|MYO10_uc011cnc.1_Missense_Mutation_p.D642Y|MYO10_uc011cnd.1_Missense_Mutation_p.D1120Y|MYO10_uc011cne.1_Missense_Mutation_p.D1120Y|MYO10_uc010itx.2_Missense_Mutation_p.D1385Y	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1763	FERM.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						GCTAAGACATCAGCTACGACG	0.478			NA											21	63					1.2644e-06	1.78049e-06	0.001523	1	0
MYO10	4651	broad.mit.edu	37	5	16701144	16701144	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:16701144G>C	uc003jft.3	-	25	3828	c.3360C>G	c.(3358-3360)GAC>GAG	p.D1120E	MYO10_uc011cnc.1_5'Flank|MYO10_uc011cnd.1_Missense_Mutation_p.D477E|MYO10_uc011cne.1_Missense_Mutation_p.D477E|MYO10_uc010itx.2_Missense_Mutation_p.D743E	NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	1120					axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						AGCAGCGGTAGTCGGGGGACC	0.627			NA											4	6					0	0	0.000248	0	0
CDH18	1016	broad.mit.edu	37	5	19520859	19520859	+	Silent	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:19520859T>A	uc003jgc.2	-	9	1796	c.1419A>T	c.(1417-1419)ACA>ACT	p.T473T	CDH18_uc003jgd.2_Silent_p.T473T|CDH18_uc011cnm.1_Silent_p.T473T	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	473	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TAATACCCACTGTGACATGGC	0.388			NA											48	93					0	0	0.00361	0	0
SLC1A3	6507	broad.mit.edu	37	5	36608599	36608599	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:36608599G>A	uc003jkj.3	+	2	550	c.74G>A	c.(73-75)CGC>CAC	p.R25H	SLC1A3_uc011cox.1_5'UTR|SLC1A3_uc010iuy.2_Missense_Mutation_p.R25H	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	25	Cytoplasmic (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	GTCCGTAAACGCACACTTTTG	0.463			NA											11	939					0	0	0.001855	0	0
WDR70	55100	broad.mit.edu	37	5	37703125	37703125	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:37703125G>A	uc003jkv.2	+	13	1410	c.1352G>A	c.(1351-1353)GGC>GAC	p.G451D		NM_018034	NP_060504	Q9NW82	WDR70_HUMAN	WD repeat domain 70	451	WD 6.									ovary(1)|central_nervous_system(1)	2	all_lung(31;0.000285)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TGTGGCAGCGGCAAACTTGTT	0.413			NA											8	806					0	0	0.00308	0	0
PARP8	79668	broad.mit.edu	37	5	50124151	50124151	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:50124151C>T	uc003jon.3	+	22	2278	c.2096C>T	c.(2095-2097)TCA>TTA	p.S699L	PARP8_uc011cpz.1_Missense_Mutation_p.S591L|PARP8_uc003joo.2_Missense_Mutation_p.S699L|PARP8_uc003jop.2_Missense_Mutation_p.S657L	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	699	PARP catalytic.					intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TTTAGTGGCTCACACATTGAA	0.378			NA											10	107					0	0	0.006214	0	0
CCDC112	153733	broad.mit.edu	37	5	114607173	114607173	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:114607173C>A	uc003kqy.2	-	7	1333	c.820G>T	c.(820-822)GCA>TCA	p.A274S	CCDC112_uc003kqz.2_Missense_Mutation_p.A357S|CCDC112_uc003kra.2_Missense_Mutation_p.A357S	NM_152549	NP_689762	Q8NEF3	CC112_HUMAN	coiled-coil domain containing 112 isoform 2	274	Potential.										0		all_cancers(142;0.000523)|all_epithelial(76;6.44e-06)|Prostate(80;0.00955)|Ovarian(225;0.0443)|all_lung(232;0.132)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;4.09e-08)|Epithelial(69;5.28e-08)|all cancers(49;7.06e-06)		GCTTCAACTGCCAAtttctgt	0.259			NA											15	87					1.49906e-05	2.01124e-05	0.00245	1	0
FBN2	2201	broad.mit.edu	37	5	127666379	127666379	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:127666379C>G	uc003kuu.2	-	33	4670	c.4231G>C	c.(4231-4233)GAA>CAA	p.E1411Q	FBN2_uc003kuv.2_Missense_Mutation_p.E1378Q	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1411	EGF-like 23; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TTAGAACATTCGTCCAGATCT	0.428			NA											7	30					0	0	0.001984	0	0
C5orf24	134553	broad.mit.edu	37	5	134190862	134190862	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:134190862G>T	uc003kzx.2	+	2	333	c.272G>T	c.(271-273)GGC>GTC	p.G91V	C5orf24_uc003kzy.3_Missense_Mutation_p.G91V|C5orf24_uc003kzz.2_Missense_Mutation_p.G91V	NM_152409	NP_689622	Q7Z6I8	CE024_HUMAN	hypothetical protein LOC134553	91											0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGTAAGCGTGGCCGGCCTTCG	0.478			NA											17	80					8.28177e-16	1.60646e-15	0.007413	1	0
PCDHB7	56129	broad.mit.edu	37	5	140553068	140553068	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:140553068G>T	uc003lit.2	+	1	826	c.652G>T	c.(652-654)GGC>TGC	p.G218C		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	218	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTTAGACGGCGGCTCTCCTCC	0.537			NA											11	58					2.27111e-07	3.35458e-07	0.001368	1	0
PCDHGA5	56110	broad.mit.edu	37	5	140744069	140744069	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:140744069G>T	uc003lju.1	+	1	172	c.172G>T	c.(172-174)GAG>TAG	p.E58*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Nonsense_Mutation_p.E58*	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	58	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGCCCCAGGAGCTGGCGGA	0.647			NA											9	99					0.000978159	0.00120216	0.000978	1	0
IL17B	27190	broad.mit.edu	37	5	148753957	148753957	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:148753957G>T	uc003lqo.2	-	3	568	c.518C>A	c.(517-519)GCT>GAT	p.A173D		NM_014443	NP_055258	Q9UHF5	IL17B_HUMAN	interleukin 17B precursor	173					cell-cell signaling|immune response|inflammatory response	extracellular space	cytokine activity|signal transducer activity			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAGCCCACAGCGATGGTCTC	0.657			NA											11	36					1.36491e-13	2.54537e-13	0.001855	1	0
ARSI	340075	broad.mit.edu	37	5	149676935	149676935	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:149676935C>A	uc003lrv.2	-	2	2141	c.1552G>T	c.(1552-1554)GGT>TGT	p.G518C		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	518						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCCCAAGCACCCCCATTAAAG	0.607			NA											17	120					3.32936e-07	4.87297e-07	0.006122	1	0
C5orf25	375484	broad.mit.edu	37	5	175716950	175716950	+	Silent	SNP	A	A	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:175716950A>G	uc003mds.3	+	4	773	c.366A>G	c.(364-366)GTA>GTG	p.V122V	C5orf25_uc003mdt.3_Intron|C5orf25_uc003mdr.3_Intron|C5orf25_uc011dfk.1_Silent_p.V141V|uc003mdu.1_Silent_p.V33V			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	122											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		ACACCTTTGTAGGTCCCCCAC	0.493			NA											3	106					0	0	0.004672	0	0
ELOVL2	54898	broad.mit.edu	37	6	10995243	10995243	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:10995243G>T	uc003mzp.3	-	5	663	c.502C>A	c.(502-504)CAA>AAA	p.Q168K		NM_017770	NP_060240	Q9NXB9	ELOV2_HUMAN	elongation of very long chain fatty acids-like	168					fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0	Breast(50;0.0418)|Ovarian(93;0.0919)	all_hematologic(90;0.117)	Epithelial(50;0.176)			AACTTACTTTGTCCACAAGGT	0.383			NA											25	151					6.32553e-13	1.15728e-12	0.004656	1	0
MBOAT1	154141	broad.mit.edu	37	6	20152873	20152873	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:20152873A>T	uc003ncx.1	-	2	432	c.227T>A	c.(226-228)GTC>GAC	p.V76D	MBOAT1_uc011dji.1_Intron	NM_001080480	NP_001073949	Q6ZNC8	MBOA1_HUMAN	membrane bound O-acyltransferase domain	76	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(95;0.244)|Breast(50;0.0379)|Ovarian(93;0.0473)|all_epithelial(95;0.109)		OV - Ovarian serous cystadenocarcinoma(7;0.00392)|all cancers(50;0.0117)|Epithelial(50;0.0454)			ACAAAAGATGACAAAATAGAT	0.438			NA											5	8					0	0	0.001168	0	0
SLC17A4	10050	broad.mit.edu	37	6	25773866	25773866	+	Silent	SNP	G	G	C	rs146741384		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:25773866G>C	uc003nfe.2	+	8	1070	c.951G>C	c.(949-951)ACG>ACC	p.T317T	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Silent_p.T78T|SLC17A4_uc003nfg.2_Silent_p.T254T|SLC17A4_uc010jqa.2_Silent_p.T30T	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	317					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						ACACACCAACGTACATCAGCT	0.388			NA											46	64					0	0	0.00361	0	0
OR2B2	81697	broad.mit.edu	37	6	27879562	27879562	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:27879562C>G	uc011dkw.1	-	1	536	c.536G>C	c.(535-537)TGT>TCT	p.C179S		NM_033057	NP_149046	Q9GZK3	OR2B2_HUMAN	olfactory receptor, family 2, subfamily B,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGGACTTCACAGAAGAAGTG	0.453			NA											25	128					0	0	0.00632	0	0
TNXB	7148	broad.mit.edu	37	6	32035686	32035686	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:32035686C>A	uc003nzl.2	-	18	6498	c.6296G>T	c.(6295-6297)GGG>GTG	p.G2099V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2171	Fibronectin type-III 14.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGTTAGCTCCCCCAGGAGCGG	0.647			NA											45	87					6.21074e-16	1.21943e-15	0.002852	1	0
IP6K3	117283	broad.mit.edu	37	6	33690860	33690860	+	Silent	SNP	A	A	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:33690860A>G	uc010jvf.2	-	7	1406	c.870T>C	c.(868-870)AAT>AAC	p.N290N	IP6K3_uc003ofb.2_Silent_p.N290N	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	290					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						GGTGGCTTCCATTATGTAGGA	0.502			NA											22	54					0	0	0.002299	0	0
BRPF3	27154	broad.mit.edu	37	6	36196766	36196766	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:36196766G>T	uc003olv.3	+	12	3591	c.3367G>T	c.(3367-3369)GAG>TAG	p.E1123*	BRPF3_uc010jwb.2_Nonsense_Mutation_p.E853*|BRPF3_uc011dtj.1_RNA|BRPF3_uc010jwc.2_Intron|BRPF3_uc011dtk.1_Nonsense_Mutation_p.E789*|BRPF3_uc010jwd.2_Nonsense_Mutation_p.E25*	NM_015695	NP_056510	Q9ULD4	BRPF3_HUMAN	bromodomain and PHD finger containing, 3	1123	PWWP.				histone H3 acetylation|platelet activation|platelet degranulation	cytosol|extracellular region|MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						GAAGCTGGGAGAGCAGAAACA	0.602			NA											27	63					2.79863e-10	4.6773e-10	0.004656	1	0
PI16	221476	broad.mit.edu	37	6	36930861	36930861	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:36930861T>A	uc003ona.2	+	5	1071	c.743T>A	c.(742-744)GTC>GAC	p.V248D	PI16_uc003omz.1_Intron|PI16_uc003onb.2_Intron|PI16_uc011dts.1_Missense_Mutation_p.V19D	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	248	Extracellular (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						GTAACAGAGGTCTCAGGCTCC	0.577			NA											22	131					0	0	0.002299	0	0
DNAH8	1769	broad.mit.edu	37	6	38905924	38905924	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:38905924C>T	uc003ooe.1	+	76	11687	c.11087C>T	c.(11086-11088)ACA>ATA	p.T3696I	DNAH8_uc003oog.1_Missense_Mutation_p.T145I|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TTCCTCATCACAGAGATGAGC	0.522			NA											37	69					0	0	0.004878	0	0
GLP1R	2740	broad.mit.edu	37	6	39047364	39047364	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:39047364C>A	uc003ooj.3	+	11	1128	c.1068C>A	c.(1066-1068)CTC>CTA	p.L356L	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	356	Helical; Name=6; (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	CGCTGACACTCATCCCCCTGC	0.577			NA											9	71					0.000978159	0.00120216	0.000978	1	0
TFAP2D	83741	broad.mit.edu	37	6	50696930	50696931	+	Missense_Mutation	DNP	GC	GC	CA			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	GC	GC	-	-	GC	GC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:50696930_50696931GC>CA	uc003paf.2	+	5	1300_1301	c.788_789GC>CA	c.(787-789)CGC>CCA	p.R263P	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	263							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					AATGGGGGCCGCTGCCTGAGAG	0.416			NA											22	149					0	0	0.004672	0	0
HCRTR2	3062	broad.mit.edu	37	6	55113436	55113436	+	Splice_Site	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:55113436G>A	uc003pcl.2	+	2	539	c.224_splice	c.e2-1	p.V75_splice	HCRTR2_uc010jzv.2_Splice_Site|HCRTR2_uc010jzw.1_Splice_Site_p.V10_splice	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2						feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TTTCAAATTAGTTTGTGTGGC	0.393			NA											18	95					0	0	0.007413	0	0
COL9A1	1297	broad.mit.edu	37	6	70970395	70970395	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:70970395C>A	uc003pfg.3	-	20	1573	c.1414G>T	c.(1414-1416)GGC>TGC	p.G472C	COL9A1_uc003pfe.3_Missense_Mutation_p.G45C|COL9A1_uc003pff.3_Missense_Mutation_p.G229C	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	472	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						CCGGTGATGCCTCGCAAACCC	0.353			NA											5	22					0.000157383	0.00020057	0.00308	1	0
MDN1	23195	broad.mit.edu	37	6	90428642	90428642	+	Nonsense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:90428642A>T	uc003pnn.1	-	42	6281	c.6165T>A	c.(6163-6165)TGT>TGA	p.C2055*		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	2055					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TCATCTGCACACACTTCATGA	0.577			NA											22	74					0	0	0.001882	0	0
GPRC6A	222545	broad.mit.edu	37	6	117130516	117130516	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:117130516C>A	uc003pxj.1	-	2	481	c.459G>T	c.(457-459)ATG>ATT	p.M153I	GPRC6A_uc003pxk.1_Missense_Mutation_p.M153I|GPRC6A_uc003pxl.1_Missense_Mutation_p.M153I	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	153	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TGGAGACAGCCATAGTTATTT	0.413			NA											18	122					6.44725e-10	1.06281e-09	0.002299	1	0
ALDH8A1	64577	broad.mit.edu	37	6	135239767	135239767	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:135239767T>C	uc003qew.2	-	7	1303	c.1250A>G	c.(1249-1251)TAT>TGT	p.Y417C	ALDH8A1_uc003qex.2_Missense_Mutation_p.Y363C|ALDH8A1_uc010kgh.2_Missense_Mutation_p.Y195C|ALDH8A1_uc011ecx.1_Missense_Mutation_p.Y367C	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	417					retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		CGCCAGCCCATACTTAACGTT	0.552			NA											13	70					0	0	0.001368	0	0
AKAP12	9590	broad.mit.edu	37	6	151673210	151673210	+	Silent	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:151673210G>C	uc011eep.1	+	4	3924	c.3684G>C	c.(3682-3684)GTG>GTC	p.V1228V	AKAP12_uc003qoe.2_Silent_p.V1228V|AKAP12_uc003qof.2_Silent_p.V1130V|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Silent_p.V1123V	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	1228					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		CCAGTTTTGTGTTCCAGGAAG	0.473	Melanoma(141;1616 1805 10049 24534 51979)		NA											16	59					0	0	0.00499	0	0
ZBTB2	57621	broad.mit.edu	37	6	151687533	151687533	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr6:151687533T>C	uc003qoh.2	-	3	803	c.668A>G	c.(667-669)GAA>GGA	p.E223G		NM_020861	NP_065912	Q8N680	ZBTB2_HUMAN	zinc finger and BTB domain containing 2	223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.63e-11)		GGAAGATGCTTCCAGATTGGT	0.552			NA											16	78					0	0	0.004007	0	0
INMT	11185	broad.mit.edu	37	7	30793517	30793517	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:30793517C>A	uc003tbs.1	+	2	341	c.325C>A	c.(325-327)CCA>ACA	p.P109T	FAM188B_uc010kwe.2_5'UTR|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Missense_Mutation_p.P108T	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	109						cytoplasm	amine N-methyltransferase activity				0						TGACTGGACCCCAGCGGTGAA	0.572			NA											37	130					1.06647e-15	2.06043e-15	0.003755	1	0
INHBA	3624	broad.mit.edu	37	7	41730102	41730103	+	Missense_Mutation	DNP	CC	CC	TA			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:41730102_41730103CC>TA	uc003thq.2	-	2	661_662	c.426_427GG>TA	c.(424-429)AAGGAA>AATAAA	p.142_143KE>NK	INHBA_uc003thr.2_Missense_Mutation_p.142_143KE>NK	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	142_143					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						TCACTGCCTTCCTTGGAAATCT	0.5			NA								TSP Lung(11;0.080)			15	47					0	0	0.004672	0	0
POM121L12	285877	broad.mit.edu	37	7	53103500	53103500	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:53103500C>A	uc003tpz.2	+	1	152	c.136C>A	c.(136-138)CCC>ACC	p.P46T		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	46											0						CACGCCATCTCCCCAGGGTCG	0.677			NA											10	39					1.08611e-07	1.62412e-07	0.000978	1	0
DTX2	113878	broad.mit.edu	37	7	76112318	76112318	+	Silent	SNP	G	G	T	rs146537218	byFrequency	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:76112318G>T	uc003uff.3	+	5	1318	c.762G>T	c.(760-762)GGG>GGT	p.G254G	DTX2_uc011kgk.1_Silent_p.G163G|DTX2_uc003ufg.3_Silent_p.G254G|DTX2_uc003ufh.3_Silent_p.G254G|DTX2_uc003ufj.3_Silent_p.G254G	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	254					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CACTCTCCGGGGCCCGGTCTG	0.677			NA											24	230					4.43304e-23	9.77697e-23	0.00632	1	0
PDK4	5166	broad.mit.edu	37	7	95216781	95216781	+	Silent	SNP	T	T	C	rs148379762		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:95216781T>C	uc003uoa.2	-	9	1250	c.930A>G	c.(928-930)ACA>ACG	p.T310T	PDK4_uc003unz.2_Silent_p.T98T	NM_002612	NP_002603	Q16654	PDK4_HUMAN	pyruvate dehydrogenase kinase 4 precursor	310	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity				0	all_cancers(62;1.06e-10)|all_epithelial(64;1.04e-09)|Lung NSC(181;0.128)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0151)			CAGTGGAGTATGTATAACTAA	0.393			NA											23	83					0	0	0.00333	0	0
LMTK2	22853	broad.mit.edu	37	7	97822738	97822738	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:97822738C>G	uc003upd.1	+	11	3254	c.2961C>G	c.(2959-2961)TTC>TTG	p.F987L		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	987					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					CAGCACCCTTCCCAGCCTCTG	0.567			NA											12	177					0	0	0.001855	0	0
ORAI2	80228	broad.mit.edu	37	7	102079390	102079390	+	Splice_Site	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:102079390G>T	uc010lhz.1	+	3	223	c.-12_splice	c.e3-1		ORAI2_uc003uzj.2_Splice_Site|ORAI2_uc003uzk.2_Splice_Site|ORAI2_uc011kks.1_Intron	NM_001126340	NP_001119812	Q96SN7	ORAI2_HUMAN	ORAI calcium release-activated calcium modulator							integral to membrane	protein binding			ovary(1)|kidney(1)	2						CCCACCCTTAGCCTGGCTCCC	0.582			NA											23	106					1.5548e-18	3.23693e-18	0.005443	1	0
FBXL13	222235	broad.mit.edu	37	7	102517943	102517943	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:102517943C>A	uc003vaq.2	-	16	2033	c.1606G>T	c.(1606-1608)GAT>TAT	p.D536Y	FBXL13_uc010liq.1_Intron|FBXL13_uc010lir.1_Missense_Mutation_p.D536Y|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.D536Y	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	536	LRR 12.										0						CCAGAGAGATCTATTGATACC	0.294			NA											15	69					1.02788e-11	1.78586e-11	0.00499	1	0
C7orf58	79974	broad.mit.edu	37	7	120782149	120782149	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:120782149C>A	uc003vjq.3	+	16	2456	c.2009C>A	c.(2008-2010)CCA>CAA	p.P670Q	C7orf58_uc003vjs.3_Missense_Mutation_p.P670Q|C7orf58_uc003vjt.3_Missense_Mutation_p.P450Q	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	670						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					GAAGACCGCCCAAGTCTGCCC	0.433			NA											31	156					4.15321e-07	6.06043e-07	0.001786	1	0
POT1	25913	broad.mit.edu	37	7	124475445	124475445	+	Nonsense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:124475445T>A	uc003vlm.2	-	15	1994	c.1393A>T	c.(1393-1395)AAA>TAA	p.K465*	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Nonsense_Mutation_p.K334*|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	465					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						TTCGAGAGTTTGCAAATTTCA	0.363	Esophageal Squamous(149;1032 1141 16047 36610 40540 42429 44687 51642)		NA											21	74					0	0	0.002299	0	0
ZNF800	168850	broad.mit.edu	37	7	127014765	127014765	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:127014765C>A	uc003vlx.1	-	5	888	c.625G>T	c.(625-627)GAA>TAA	p.E209*	ZNF800_uc003vlw.1_Nonsense_Mutation_p.E112*|ZNF800_uc003vly.1_Nonsense_Mutation_p.E209*|ZNF800_uc010lla.2_Nonsense_Mutation_p.E209*	NM_176814	NP_789784	Q2TB10	ZN800_HUMAN	zinc finger protein 800	209					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGAGGTTGTTCATCAGATGTA	0.418			NA											32	109					3.57733e-08	5.43349e-08	0.001786	1	0
HIPK2	28996	broad.mit.edu	37	7	139416353	139416353	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:139416353C>A	uc003vvf.3	-	2	655	c.481G>T	c.(481-483)GCC>TCC	p.A161S	HIPK2_uc003vvd.3_Missense_Mutation_p.A161S	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	161	Transcriptional corepression (By similarity).				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					GCGACAGTGGCCCCGCTTGCA	0.557			NA											26	113					5.61819e-17	1.13066e-16	0.005443	1	0
BRAF	673	broad.mit.edu	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	T	C	rs121913370		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:140453193T>C	uc003vwc.3	-	15	1803	c.1742A>G	c.(1741-1743)AAT>AGT	p.N581S		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	581	Protein kinase.		N -> D (in CFC syndrome).|N -> S (in a colorectal adenocarcinoma sample; somatic mutation).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.N581S(7)|p.N581Y(1)|p.N581I(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	AAGAAATATATCTGAGGTGTA	0.358	Colon(40;35 892 2973 5743 27438)		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				8	76					0	0	0.006214	0	0
TAS2R60	338398	broad.mit.edu	37	7	143140666	143140666	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:143140666G>T	uc011ktg.1	+	1	121	c.121G>T	c.(121-123)GCT>TCT	p.A41S	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	41	Helical; Name=2; (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					CATCACTGCTGCTCTGGGCGT	0.493			NA											42	124					1.62957e-23	3.61047e-23	0.00874	1	0
KCNH2	3757	broad.mit.edu	37	7	150644045	150644045	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:150644045G>T	uc003wic.2	-	14	3263	c.3250C>A	c.(3250-3252)CCG>ACG	p.P1084T	KCNH2_uc003wib.2_Missense_Mutation_p.P744T|KCNH2_uc011kux.1_Missense_Mutation_p.P988T	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	1084	Cytoplasmic (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	CCAGGCCCCGGGGTGGTCACA	0.662	GBM(137;110 1844 13671 20123 45161)		NA											18	97					8.34094e-07	1.17797e-06	0.008871	1	0
PTPRN2	5799	broad.mit.edu	37	7	157959945	157959945	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr7:157959945C>A	uc003wno.2	-	6	709	c.588G>T	c.(586-588)GTG>GTT	p.V196V	PTPRN2_uc003wnp.2_Silent_p.V179V|PTPRN2_uc003wnq.2_Silent_p.V196V|PTPRN2_uc003wnr.2_Silent_p.V158V|PTPRN2_uc011kwa.1_Silent_p.V219V	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	196	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		ACGTGTGGGCCACATAGGTCA	0.627			NA											10	78					0.000442599	0.000556707	0.006214	1	0
CSMD1	64478	broad.mit.edu	37	8	3076867	3076867	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr8:3076867C>G	uc011kwk.1	-	29	4975	c.4585G>C	c.(4585-4587)GAA>CAA	p.E1529Q	CSMD1_uc011kwj.1_Missense_Mutation_p.E921Q|CSMD1_uc003wqe.2_Missense_Mutation_p.E685Q	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1529	Extracellular (Potential).|CUB 9.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCTATTCTTTCTGGGGCCTGA	0.498			NA											2	3					0	0	0.004672	0	0
BLK	640	broad.mit.edu	37	8	11414294	11414294	+	Silent	SNP	C	C	T	rs139994406	by1000genomes	TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr8:11414294C>T	uc003wty.2	+	9	1481	c.900C>T	c.(898-900)TAC>TAT	p.Y300Y	BLK_uc003wtz.2_Silent_p.Y229Y	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	300	Protein kinase.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		TCCGACTCTACGCAGTGGTCA	0.617			NA											8	35					0	0	0.00308	0	0
NEFL	4747	broad.mit.edu	37	8	24811218	24811218	+	Nonsense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr8:24811218G>A	uc003xee.2	-	3	1363	c.1261C>T	c.(1261-1263)CGA>TGA	p.R421*		NM_006158	NP_006149	P07196	NFL_HUMAN	neurofilament, light polypeptide 68kDa	421	Tail.|Tail, subdomain A.				anterograde axon cargo transport|axon transport of mitochondrion|neurofilament bundle assembly|retrograde axon cargo transport|synaptic transmission	cytosol|neurofilament	identical protein binding|protein C-terminus binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.00965)|Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		TAGGCAGATCGGCCAAAGACC	0.572			NA											13	78					0	0	0.00245	0	0
ADAM9	8754	broad.mit.edu	37	8	38948862	38948862	+	Silent	SNP	A	A	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr8:38948862A>G	uc003xmr.2	+	20	2373	c.2295A>G	c.(2293-2295)GAA>GAG	p.E765E	ADAM9_uc011lcf.1_RNA|ADAM9_uc011lcg.1_RNA|ADAM9_uc010lwr.2_RNA|ADAM9_uc003xms.2_RNA	NM_003816	NP_003807	Q13443	ADAM9_HUMAN	ADAM metallopeptidase domain 9 isoform 1	765	Cytoplasmic (Potential).			Missing (in Ref. 2; no nucleotide entry).	activation of MAPKK activity|cell-cell adhesion mediated by integrin|cell-matrix adhesion|keratinocyte differentiation|monocyte activation|PMA-inducible membrane protein ectodomain proteolysis|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell adhesion mediated by integrin|positive regulation of keratinocyte migration|positive regulation of macrophage fusion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of protein secretion|response to calcium ion|response to glucocorticoid stimulus|response to hydrogen peroxide|response to manganese ion|response to tumor necrosis factor|transforming growth factor beta receptor signaling pathway	extracellular space|extracellular space|integral to membrane|intrinsic to external side of plasma membrane	collagen binding|integrin binding|laminin binding|metalloendopeptidase activity|protein kinase C binding|SH3 domain binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.0153)	LUSC - Lung squamous cell carcinoma(45;2.74e-07)			CTCCCAGAGAAGTTGTAAGTA	0.348			NA											19	153					0	0	0.006122	0	0
HOOK3	84376	broad.mit.edu	37	8	42823213	42823213	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr8:42823213G>T	uc003xpr.2	+	11	1220	c.978G>T	c.(976-978)AAG>AAT	p.K326N	HOOK3_uc010lxq.1_Missense_Mutation_p.K326N	NM_032410	NP_115786	Q86VS8	HOOK3_HUMAN	golgi-associated microtubule-binding protein	326	Potential.				cytoplasmic microtubule organization|early endosome to late endosome transport|endosome organization|endosome to lysosome transport|Golgi localization|interkinetic nuclear migration|lysosome organization|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome|protein transport	cis-Golgi network|FHF complex|microtubule|pericentriolar material	identical protein binding|microtubule binding			ovary(1)|breast(1)	2	Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.000105)|Lung NSC(58;0.000419)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.048)|LUSC - Lung squamous cell carcinoma(45;0.114)			ATAAAAAGAAGCTAGAAGACC	0.338			NA	T	RET	papillary thyroid								28	57					2.65835e-16	5.26222e-16	0.007291	1	0
OPRK1	4986	broad.mit.edu	37	8	54142028	54142028	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr8:54142028G>T	uc003xrh.1	-	3	1347	c.972C>A	c.(970-972)AGC>AGA	p.S324R	OPRK1_uc003xri.1_Missense_Mutation_p.S324R|OPRK1_uc010lyc.1_Missense_Mutation_p.S235R	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	324	Helical; Name=7; (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	TGGGATTCAGGCTACTGTTGG	0.512			NA											8	65					0.00307968	0.00370021	0.00308	1	0
EYA1	2138	broad.mit.edu	37	8	72246386	72246386	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr8:72246386T>A	uc003xys.3	-	3	435	c.148A>T	c.(148-150)AGT>TGT	p.S50C	EYA1_uc003xyr.3_Missense_Mutation_p.S50C|EYA1_uc003xyt.3_Missense_Mutation_p.S17C|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Missense_Mutation_p.S50C|EYA1_uc011lfe.1_Missense_Mutation_p.S50C|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	50					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GCTGTTTCACTGCTGCTCATT	0.328			NA											32	62					0	0	0.002836	0	0
CSMD3	114788	broad.mit.edu	37	8	114186001	114186001	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr8:114186001G>T	uc003ynu.2	-	4	818	c.659C>A	c.(658-660)GCC>GAC	p.A220D	CSMD3_uc003ynt.2_Missense_Mutation_p.A180D|CSMD3_uc011lhx.1_Missense_Mutation_p.A220D|CSMD3_uc010mcx.1_Missense_Mutation_p.A220D	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	220	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AACTGAATTGGCTATGCAGGT	0.428			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			20	99					1.10513e-12	1.99917e-12	0.002299	1	0
COL14A1	7373	broad.mit.edu	37	8	121381596	121381596	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr8:121381596G>T	uc003yox.2	+	47	5448	c.5183G>T	c.(5182-5184)AGC>ATC	p.S1728I	COL14A1_uc003yoz.2_Missense_Mutation_p.S693I	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1728	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CGGCCTGGCAGCCCTGGGCCC	0.582			NA											16	95					2.23348e-06	3.09992e-06	0.004007	1	0
C9orf68	55064	broad.mit.edu	37	9	4625390	4625390	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr9:4625390C>A	uc011llz.1	-	5	670	c.432G>T	c.(430-432)CAG>CAT	p.Q144H	C9orf68_uc003zik.2_RNA|C9orf68_uc003zil.2_RNA|C9orf68_uc010mhj.2_Missense_Mutation_p.Q202H|C9orf68_uc011lly.1_Missense_Mutation_p.Q79H	NM_001039395	NP_001034484	B4DIY4	B4DIY4_HUMAN	hypothetical protein LOC55064	144											0		Breast(48;0.0456)		GBM - Glioblastoma multiforme(50;0.0222)		CAAGGTTCAACTGAGCTGGCT	0.428			NA											20	68					1.96292e-10	3.30345e-10	0.001523	1	0
C9orf68	55064	broad.mit.edu	37	9	4625413	4625413	+	Missense_Mutation	SNP	A	A	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr9:4625413A>C	uc011llz.1	-	5	647	c.409T>G	c.(409-411)TTC>GTC	p.F137V	C9orf68_uc003zik.2_RNA|C9orf68_uc003zil.2_RNA|C9orf68_uc010mhj.2_Missense_Mutation_p.F195V|C9orf68_uc011lly.1_Missense_Mutation_p.F72V	NM_001039395	NP_001034484	B4DIY4	B4DIY4_HUMAN	hypothetical protein LOC55064	137											0		Breast(48;0.0456)		GBM - Glioblastoma multiforme(50;0.0222)		TCCTGGAAGAAATGCCTGGTA	0.433			NA											19	71					0	0	0.007413	0	0
KIAA2026	158358	broad.mit.edu	37	9	5920027	5920027	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr9:5920027G>C	uc003zjq.3	-	8	6185	c.5969C>G	c.(5968-5970)GCT>GGT	p.A1990G	KIAA2026_uc010mht.2_Missense_Mutation_p.A1165G	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1990										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		AGGAACCTTAGCAGTTGTGTT	0.398			NA											35	193					0	0	0.004878	0	0
KIAA2026	158358	broad.mit.edu	37	9	5920648	5920648	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr9:5920648C>A	uc003zjq.3	-	8	5564	c.5348G>T	c.(5347-5349)CGG>CTG	p.R1783L	KIAA2026_uc010mht.2_Missense_Mutation_p.R958L	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1783										ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		GAGTGAAGTCCGAGATTGTCT	0.418			NA											116	487					3.35115e-56	7.81934e-56	0.00361	1	0
KIAA1797	54914	broad.mit.edu	37	9	20946798	20946798	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr9:20946798G>T	uc003zog.1	+	32	4017	c.3654G>T	c.(3652-3654)CTG>CTT	p.L1218L	KIAA1797_uc003zoh.1_Silent_p.L654L	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1218						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		AGCTTCGACTGTTAGTGGAGA	0.453			NA											21	90					8.10497e-08	1.22718e-07	0.001523	1	0
SHOX	6473	broad.mit.edu	37	X	591669	591669	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:591669G>T	uc004cph.1	+	2	728	c.37G>T	c.(37-39)GAC>TAC	p.D13Y	SHOX_uc004cpi.2_Missense_Mutation_p.D13Y	NM_000451	NP_000442	O15266	SHOX_HUMAN	short stature homeobox isoform SHOXa	13					skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CAAGTCTTTTGACCAGAAAAG	0.637	Ovarian(95;18 1419 12424 14056 28266)		NA											32	262					1.61788e-16	3.21578e-16	0.002445	1	0
ARSF	416	broad.mit.edu	37	X	3002590	3002590	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:3002590C>A	uc004cre.1	+	6	934	c.713C>A	c.(712-714)ACG>AAG	p.T238K	ARSF_uc004crf.1_Missense_Mutation_p.T238K	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	238						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCCAGCCACACGTCCCCTTTA	0.547			NA											14	129					3.41278e-10	5.68405e-10	0.00499	1	0
NLGN4X	57502	broad.mit.edu	37	X	5821398	5821398	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:5821398C>A	uc010ndh.2	-	5	1822	c.1321G>T	c.(1321-1323)GTG>TTG	p.V441L	NLGN4X_uc004crp.2_Missense_Mutation_p.V461L|NLGN4X_uc004crq.2_Missense_Mutation_p.V441L|NLGN4X_uc010ndi.2_Missense_Mutation_p.V478L|NLGN4X_uc004crr.2_Missense_Mutation_p.V441L|NLGN4X_uc010ndj.2_Missense_Mutation_p.V441L	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	441	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						AAGAGAGCCACCAGGGTTTTC	0.597			NA											16	57					6.49762e-13	1.17983e-12	0.006122	1	0
ATXN3L	92552	broad.mit.edu	37	X	13337046	13337046	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:13337046G>T	uc010ned.2	-	1	1473	c.1008C>A	c.(1006-1008)GCC>GCA	p.A336A		NM_001135995	NP_001129467	Q9H3M9	ATX3L_HUMAN	ataxin 3-like	336					protein deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ubiquitin-specific protease activity			lung(2)|ovary(2)|large_intestine(1)|skin(1)	6						TGTCGACAGCGGCCTGTACTG	0.393			NA											63	210					2.23399e-28	5.04215e-28	0.00361	1	0
EGFL6	25975	broad.mit.edu	37	X	13624574	13624574	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:13624574C>A	uc004cvi.2	+	6	837	c.597C>A	c.(595-597)TAC>TAA	p.Y199*	EGFL6_uc004cvj.2_Nonsense_Mutation_p.Y199*|EGFL6_uc011mik.1_Nonsense_Mutation_p.Y100*	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	199	EGF-like 4; calcium-binding (Potential).				cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						GAAGCTACTACTGCAAATGTC	0.413			NA											41	134					2.87052e-16	5.65902e-16	0.005524	1	0
FANCB	2187	broad.mit.edu	37	X	14882911	14882911	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:14882911T>A	uc004cwg.1	-	3	990	c.722A>T	c.(721-723)CAT>CTT	p.H241L	FANCB_uc004cwh.1_Missense_Mutation_p.H241L	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	241					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					TGCACAAATATGTACATAAGT	0.338			NA						Involved_in_tolerance_or_repair_of_DNA_crosslinks	FanconAnemia				20	94					0	0	0.007413	0	0
MOSPD2	158747	broad.mit.edu	37	X	14915215	14915215	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:14915215G>T	uc004cwi.2	+	5	420	c.332G>T	c.(331-333)AGG>ATG	p.R111M	MOSPD2_uc004cwj.2_Missense_Mutation_p.R48M	NM_152581	NP_689794	Q8NHP6	MSPD2_HUMAN	motile sperm domain containing 2	111	CRAL-TRIO.					integral to membrane	structural molecule activity			lung(1)	1	Hepatocellular(33;0.183)					GTCTGGATCAGGGTGAAGTAT	0.328			NA											15	97					1.05317e-09	1.70698e-09	0.00245	1	0
ASB11	140456	broad.mit.edu	37	X	15306059	15306059	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:15306059G>T	uc004cwp.1	-	6	791	c.791C>A	c.(790-792)GCG>GAG	p.A264E	ASB11_uc004cwo.1_Missense_Mutation_p.A243E|ASB11_uc010nes.1_RNA|ASB11_uc010net.1_Missense_Mutation_p.A247E	NM_080873	NP_543149	Q8WXH4	ASB11_HUMAN	ankyrin repeat and SOCS box-containing protein	264					intracellular signal transduction					breast(2)|skin(1)	3	Hepatocellular(33;0.183)					CAGATCAAGCGCACTTTTGCC	0.542			NA											18	68					7.07596e-05	9.18733e-05	0.006122	1	0
GPR64	10149	broad.mit.edu	37	X	19027777	19027777	+	Silent	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:19027777A>T	uc004cyx.2	-	18	1553	c.1389T>A	c.(1387-1389)ACT>ACA	p.T463T	GPR64_uc004cyy.2_Silent_p.T460T|GPR64_uc004cyz.2_Silent_p.T449T|GPR64_uc004czb.2_Silent_p.T463T|GPR64_uc004czc.2_Silent_p.T447T|GPR64_uc004czd.2_Silent_p.T439T|GPR64_uc004cze.2_Silent_p.T433T|GPR64_uc004czf.2_Silent_p.T425T|GPR64_uc004cza.2_Silent_p.T441T|GPR64_uc004cyw.2_Silent_p.T447T|GPR64_uc010nfj.2_Silent_p.T433T	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	463	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					CCACAAAGGTAGTTGTGTTGA	0.423			NA											16	104					0	0	0.006122	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157298	26157298	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:26157298G>T	uc004dbq.1	+	2	383	c.196G>T	c.(196-198)GGA>TGA	p.G66*		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	66							protein binding			central_nervous_system(1)	1						AGCGCTTCAGGGAGCCCCATC	0.532			NA											12	46					1.61879e-10	2.74343e-10	0.001368	1	0
IL1RAPL1	11141	broad.mit.edu	37	X	29938182	29938182	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:29938182G>T	uc004dby.2	+	8	1536	c.1028G>T	c.(1027-1029)CGA>CTA	p.R343L		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	343	Extracellular (Potential).|Ig-like C2-type 3.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						AATGGACGTCGACACGCCAGC	0.438			NA											32	95					1.08312e-15	2.08425e-15	0.001786	1	0
MAGEB2	4113	broad.mit.edu	37	X	30237292	30237292	+	Missense_Mutation	SNP	C	C	A	rs45513291		TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:30237292C>A	uc004dbz.2	+	2	698	c.595C>A	c.(595-597)CCC>ACC	p.P199T		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	199	MAGE.						protein binding			ovary(1)	1						CTGGGACTTTCCCAGGAGAAA	0.488			NA											10	33					2.17888e-05	2.89917e-05	0.006214	1	0
FAM47A	158724	broad.mit.edu	37	X	34148514	34148514	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:34148514G>A	uc004ddg.2	-	1	1915	c.1882C>T	c.(1882-1884)CTG>TTG	p.L628L		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	628										ovary(4)|central_nervous_system(1)	5						AAGTCAAACAGATTCCTGATG	0.443			NA											21	85					0	0	0.008871	0	0
CYBB	1536	broad.mit.edu	37	X	37655268	37655268	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:37655268C>A	uc004ddr.2	+	6	609	c.548C>A	c.(547-549)ACG>AAG	p.T183K	CYBB_uc011mke.1_RNA|CYBB_uc011mkf.1_Missense_Mutation_p.T151K|CYBB_uc011mkg.1_Intron	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	183	Helical; (Potential).|Ferric oxidoreductase.				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GTTGTCATCACGCTGTGCCTC	0.398			NA											13	71					9.31168e-06	1.27049e-05	0.001855	1	0
BCOR	54880	broad.mit.edu	37	X	39933626	39933626	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:39933626G>T	uc004den.3	-	4	1265	c.973C>A	c.(973-975)CTG>ATG	p.L325M	BCOR_uc004dep.3_Missense_Mutation_p.L325M|BCOR_uc004deo.3_Missense_Mutation_p.L325M|BCOR_uc004dem.3_Missense_Mutation_p.L325M|BCOR_uc004deq.3_Missense_Mutation_p.L325M	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	325					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						TCCCCCGGCAGGCCACTGGTG	0.647			NA											5	37					0.00116845	0.00142876	0.001168	1	0
SLC35A2	7355	broad.mit.edu	37	X	48762073	48762073	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:48762073C>A	uc004dlo.1	-	4	1117	c.1113G>T	c.(1111-1113)CCG>CCT	p.P371P	SLC35A2_uc011mml.1_Silent_p.P384P|SLC35A2_uc004dlp.1_Silent_p.P371P|SLC35A2_uc011mmm.1_Silent_p.P399P|SLC35A2_uc011mmn.1_Silent_p.P310P|SLC35A2_uc004dlr.1_3'UTR|SLC35A2_uc004dlq.2_Missense_Mutation_p.A175S	NM_005660	NP_005651	P78381	S35A2_HUMAN	solute carrier family 35, member A2 isoform a	371					galactose metabolic process	Golgi membrane|integral to membrane|nucleus	sugar:hydrogen symporter activity|UDP-galactose transmembrane transporter activity			breast(1)	1						AAGACAGCTGCGGTGGTGGTG	0.652			NA											10	35					3.07112e-06	4.25029e-06	0.000978	1	0
TSR2	90121	broad.mit.edu	37	X	54466893	54466893	+	Silent	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:54466893G>T	uc004dte.2	+	1	41	c.39G>T	c.(37-39)CGG>CGT	p.R13R	TSR2_uc004dtf.2_5'UTR	NM_058163	NP_477511	Q969E8	TSR2_HUMAN	TSR2, 20S rRNA accumulation, homolog	13					rRNA processing		protein binding				0						CTCTTTTCCGGGCTGGGGTCT	0.697			NA											4	16					0.00024832	0.000313975	0.000248	1	0
FGD1	2245	broad.mit.edu	37	X	54497808	54497808	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:54497808C>A	uc004dtg.2	-	2	1154	c.420G>T	c.(418-420)CCG>CCT	p.P140P	FGD1_uc011moi.1_5'Flank	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	140	Pro-rich.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GGGTTTCAGTCGGGGGACCTG	0.607			NA											32	79					8.88839e-20	1.90804e-19	0.002096	1	0
USP51	158880	broad.mit.edu	37	X	55513306	55513306	+	Silent	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:55513306G>A	uc004dun.1	-	2	2146	c.2067C>T	c.(2065-2067)ACC>ACT	p.T689T	USP51_uc011moo.1_Silent_p.T393T	NM_201286	NP_958443	Q70EK9	UBP51_HUMAN	ubiquitin specific protease 51	689					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						AGTCCTCAATGGTAGCCTTGG	0.433			NA											16	81					0	0	0.003163	0	0
UBQLN2	29978	broad.mit.edu	37	X	56591074	56591074	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:56591074C>G	uc004dus.2	+	1	1003	c.768C>G	c.(766-768)AGC>AGG	p.S256R	UBQLN2_uc011moq.1_Missense_Mutation_p.S256R	NM_013444	NP_038472	Q9UHD9	UBQL2_HUMAN	ubiquilin 2	256						cytoplasm|nucleus|plasma membrane	binding			ovary(1)|skin(1)	2						TGGCTCTTAGCAATCTAGAAA	0.483	Esophageal Squamous(104;218 1492 6022 10838 28884)		NA											14	71					0	0	0.00245	0	0
FAM123B	139285	broad.mit.edu	37	X	63410828	63410828	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:63410828C>A	uc004dvo.2	-	2	2612	c.2339G>T	c.(2338-2340)GGG>GTG	p.G780V		NM_152424	NP_689637	Q5JTC6	F123B_HUMAN	family with sequence similarity 123B	780					Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane		p.0?(40)		kidney(99)|large_intestine(6)|ovary(3)|lung(2)|breast(1)|liver(1)	112						AAAGAGGTTCCCATTGCTGGT	0.512			NA											11	35					2.80697e-09	4.45977e-09	0.000978	1	0
TEX11	56159	broad.mit.edu	37	X	69902602	69902602	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:69902602G>T	uc004dyl.2	-	15	1285	c.1123C>A	c.(1123-1125)CTG>ATG	p.L375M	TEX11_uc004dyk.2_Missense_Mutation_p.L50M|TEX11_uc004dym.2_Missense_Mutation_p.L360M	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	375							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					TGGAGTATCAGAACTTTTCCA	0.358			NA											14	45					9.31168e-06	1.27049e-05	0.001855	1	0
ACRC	93953	broad.mit.edu	37	X	70824043	70824043	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:70824043G>T	uc004eae.2	+	8	1417	c.916G>T	c.(916-918)GAC>TAC	p.D306Y	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	306	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					GGAAGCTCCCGACGACAAGAG	0.512			NA											46	264					2.77807e-22	6.09913e-22	0.003214	1	0
FAM46D	169966	broad.mit.edu	37	X	79699123	79699123	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:79699123C>A	uc004edl.1	+	5	1419	c.1085C>A	c.(1084-1086)CCT>CAT	p.P362H	FAM46D_uc004edm.1_Missense_Mutation_p.P362H	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	362										lung(2)	2						GCAAGGTACCCTATTTATGTA	0.428			NA											8	49					0.00448238	0.00534565	0.004482	1	0
PABPC5	140886	broad.mit.edu	37	X	90690795	90690795	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:90690795G>C	uc004efg.2	+	2	659	c.219G>C	c.(217-219)GAG>GAC	p.E73D	PABPC5_uc004eff.1_Intron	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	73	RRM 1.					cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						CGGATGCAGAGTGGGCCTTGA	0.532			NA											7	37					0	0	0.001984	0	0
XKRX	402415	broad.mit.edu	37	X	100178004	100178004	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:100178004C>A	uc004egn.2	-	2	987	c.382G>T	c.(382-384)GAG>TAG	p.E128*	XKRX_uc011mre.1_Intron	NM_212559	NP_997724	Q6PP77	XKR2_HUMAN	XK, Kell blood group complex subunit-related,	128						integral to membrane|plasma membrane				breast(1)	1						TCCTCCTGCTCCTCTTTCTTC	0.512			NA											32	140					2.46105e-21	5.33044e-21	0.002096	1	0
IRS4	8471	broad.mit.edu	37	X	107977841	107977841	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:107977841A>T	uc004eoc.2	-	1	1767	c.1734T>A	c.(1732-1734)GAT>GAA	p.D578E		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	578						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						AGCCATGGCCATCTCCAGGTC	0.612			NA											61	277					0	0	0.00361	0	0
GUCY2F	2986	broad.mit.edu	37	X	108708604	108708604	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:108708604G>C	uc004eod.3	-	3	1075	c.799C>G	c.(799-801)CAT>GAT	p.H267D	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	267	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TTCAGATCATGAGCACATTCC	0.443			NA											32	177					0	0	0.003271	0	0
TRPC5	7224	broad.mit.edu	37	X	111195529	111195529	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:111195529C>A	uc004epl.1	-	2	1039	c.120G>T	c.(118-120)GTG>GTT	p.V40V	TRPC5_uc004epm.1_Silent_p.V40V	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	40	Cytoplasmic (Potential).|ANK 1.				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						CCCCCTTCTCCACAGCATTGA	0.542			NA											19	77					2.4624e-09	3.92521e-09	0.008871	1	0
LONRF3	79836	broad.mit.edu	37	X	118108865	118108865	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:118108865T>C	uc004eqw.2	+	1	153	c.122T>C	c.(121-123)GTG>GCG	p.V41A	LONRF3_uc004eqx.2_Missense_Mutation_p.V41A|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_5'Flank	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	41					proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						CACCCAAAGGTGGCTGCAGAG	0.662			NA											3	10					0	0	0.004672	0	0
KIAA1210	57481	broad.mit.edu	37	X	118220782	118220782	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:118220782C>T	uc004era.3	-	11	4411	c.4411G>A	c.(4411-4413)GAT>AAT	p.D1471N		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1471										ovary(4)|skin(1)	5						TTTTCAACATCATCCTGATTG	0.438			NA											4	79					0	0	0.000248	0	0
CXorf56	63932	broad.mit.edu	37	X	118675326	118675326	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:118675326G>C	uc004erk.1	-	6	617	c.571C>G	c.(571-573)CGC>GGC	p.R191G	uc004eri.2_5'Flank|CXorf56_uc004erj.1_Missense_Mutation_p.R142G|CXorf56_uc011mtu.1_Missense_Mutation_p.R177G	NM_022101	NP_071384	Q9H5V9	CX056_HUMAN	hypothetical protein LOC63932	191	Potential.						protein binding				0						ATGCCTTTGCGCTCCAGCTGT	0.493			NA											57	216					0	0	0.00361	0	0
ZBTB33	10009	broad.mit.edu	37	X	119387450	119387450	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:119387450C>A	uc004esn.1	+	2	408	c.180C>A	c.(178-180)CTC>CTA	p.L60L	ZBTB33_uc010nqm.1_Silent_p.L60L	NM_006777	NP_006768	Q86T24	KAISO_HUMAN	kaiso	60	BTB.|Self-association (By similarity).|Interaction with NCOR1.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleolus|plasma membrane	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TCCATCAGCTCTTCTCTGTTG	0.393			NA											53	303					4.88506e-25	1.09235e-24	0.00361	1	0
ODZ1	10178	broad.mit.edu	37	X	123839006	123839006	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:123839006G>A	uc004euj.2	-	5	936	c.872C>T	c.(871-873)CCT>CTT	p.P291L	ODZ1_uc011muj.1_Missense_Mutation_p.P291L|ODZ1_uc010nqy.2_Missense_Mutation_p.P291L	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	291	Teneurin N-terminal.|Cytoplasmic (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AGGCCTGGGAGGGGGCGAGTA	0.527			NA											38	218					0	0	0.007835	0	0
SMARCA1	6594	broad.mit.edu	37	X	128657272	128657272	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:128657272C>A	uc004eun.3	-	1	189	c.76G>T	c.(76-78)GAC>TAC	p.D26Y	SMARCA1_uc004eup.3_Missense_Mutation_p.D26Y|SMARCA1_uc011muk.1_Missense_Mutation_p.D26Y|SMARCA1_uc011mul.1_Missense_Mutation_p.D26Y	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	26					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						GGCTGCTCGTCCTCTATGACC	0.697			NA											14	61					2.31682e-05	3.07425e-05	0.003163	1	0
AIFM1	9131	broad.mit.edu	37	X	129271088	129271088	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:129271088T>A	uc004evg.2	-	10	1218	c.1040A>T	c.(1039-1041)TAC>TTC	p.Y347F	AIFM1_uc011mur.1_5'UTR|AIFM1_uc011mus.1_3'UTR|AIFM1_uc004evh.2_Missense_Mutation_p.Y343F|AIFM1_uc004evi.2_Missense_Mutation_p.Y60F|AIFM1_uc004evk.2_RNA	NM_004208	NP_004199	O95831	AIFM1_HUMAN	programmed cell death 8 isoform 1	347	FAD-dependent oxidoreductase (By similarity).				activation of caspase activity|apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change	cytosol|mitochondrial inner membrane|mitochondrial intermembrane space|nucleus|perinuclear region of cytoplasm	DNA binding|electron carrier activity|flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			ovary(4)|central_nervous_system(1)	5						GTTGCTGAGGTATTCGGGGAG	0.468			NA											32	150					0	0	0.004878	0	0
FRMD7	90167	broad.mit.edu	37	X	131212510	131212510	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:131212510C>A	uc004ewn.2	-	12	1713	c.1535G>T	c.(1534-1536)AGA>ATA	p.R512I	FRMD7_uc011muy.1_Missense_Mutation_p.R497I	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	512					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TTCCTCTGCTCTAATTGGGGA	0.483			NA											58	239					2.14255e-21	4.66149e-21	0.00361	1	0
USP26	83844	broad.mit.edu	37	X	132160953	132160953	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:132160953G>T	uc010nrm.1	-	6	1766	c.1296C>A	c.(1294-1296)TGC>TGA	p.C432*	USP26_uc011mvf.1_Nonsense_Mutation_p.C432*	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	432					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TAATGACAGGGCAAGAAAACC	0.378	NSCLC(104;342 1621 36940 47097 52632)		NA											22	109					1.9806e-07	2.94347e-07	0.002299	1	0
SAGE1	55511	broad.mit.edu	37	X	134983834	134983834	+	Nonsense_Mutation	SNP	G	G	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:134983834G>A	uc004ezh.2	+	3	371	c.204G>A	c.(202-204)TGG>TGA	p.W68*	SAGE1_uc010nry.1_Nonsense_Mutation_p.W68*|SAGE1_uc011mvv.1_Nonsense_Mutation_p.W68*	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	68										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TGTCCTCGTGGTTAGACAAAC	0.428			NA											65	298					0	0	0.00361	0	0
MAGEA8	4107	broad.mit.edu	37	X	149013289	149013289	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:149013289C>G	uc004fdw.1	+	3	458	c.243C>G	c.(241-243)AGC>AGG	p.S81R		NM_005364	NP_005355	P43361	MAGA8_HUMAN	melanoma antigen family A, 8	81											0	Acute lymphoblastic leukemia(192;6.56e-05)					CTCTGTGGAGCCAATCCGATG	0.597			NA											20	91					0	0	0.007413	0	0
GPR50	9248	broad.mit.edu	37	X	150349618	150349618	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:150349618C>A	uc010ntg.1	+	2	1698	c.1563C>A	c.(1561-1563)CCC>CCA	p.P521P		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	521	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTGACTATCCCAAGCCTGCCA	0.612			NA											28	80					2.40579e-17	4.88234e-17	0.00623	1	0
MAGEA4	4103	broad.mit.edu	37	X	151092221	151092221	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:151092221C>A	uc004fez.2	+	3	241	c.85C>A	c.(85-87)CAG>AAG	p.Q29K	MAGEA4_uc004ffa.2_Missense_Mutation_p.Q29K|MAGEA4_uc004ffb.2_Missense_Mutation_p.Q29K|MAGEA4_uc004ffc.2_Missense_Mutation_p.Q29K|MAGEA4_uc004ffd.2_Missense_Mutation_p.Q29K	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	29							protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGTGGGTGCACAGGCTCCTAC	0.612			NA											23	80					2.89027e-11	4.96797e-11	0.002299	1	0
HCFC1	3054	broad.mit.edu	37	X	153219071	153219071	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:153219071C>A	uc004fjp.2	-	18	5012	c.4484G>T	c.(4483-4485)GGC>GTC	p.G1495V		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	1495					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CACAGAGGGGCCCGGGACCGG	0.652			NA											13	62					0.00185496	0.00224548	0.001855	1	0
PLXNA3	55558	broad.mit.edu	37	X	153694526	153694526	+	Silent	SNP	C	C	A			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chrX:153694526C>A	uc004flm.2	+	15	2885	c.2712C>A	c.(2710-2712)CCC>CCA	p.P904P		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	904	IPT/TIG 1.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CGCTGGTGCCCAGCCCGCCGC	0.682			NA											14	77					1.37285e-15	2.6313e-15	0.004007	1	0
JUN	3725	broad.mit.edu	37	1	59247873	59247873	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:59247873delC	uc001cze.2	-	1	1913	c.870delG	c.(868-870)CAGfs	p.Q290fs	uc001czf.2_5'Flank|uc010oop.1_5'Flank	NM_002228	NP_002219	P05412	JUN_HUMAN	jun oncogene	290	Leucine-zipper.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation by host of viral transcription|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|SMAD protein import into nucleus|SMAD protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway		R-SMAD binding|Rho GTPase activator activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription coactivator activity|transcription factor binding|transcription regulatory region DNA binding				0	all_cancers(7;8.55e-07)				Arsenic trioxide(DB01169)|Irbesartan(DB01029)|Vinblastine(DB00570)	GCTCCGAGTTCTGAGCTTTCA	0.542			NA	A		sarcoma						OREG0013518	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	173	---	---	---	---	NA	NA	NA	NA	NA
COL11A1	1301	broad.mit.edu	37	1	103355036	103355036	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr1:103355036delC	uc001dul.2	-	59	4757	c.4439delG	c.(4438-4440)GGAfs	p.G1480fs	COL11A1_uc001duk.2_Frame_Shift_Del_p.G676fs|COL11A1_uc001dum.2_Frame_Shift_Del_p.G1492fs|COL11A1_uc001dun.2_Frame_Shift_Del_p.G1441fs|COL11A1_uc009weh.2_Frame_Shift_Del_p.G1364fs	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1480	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TCCTGGAGATCCTTGAGTTCC	0.393			NA											19	98	---	---	---	---	NA	NA	NA	NA	NA
SWAP70	23075	broad.mit.edu	37	11	9759806	9759806	+	Frame_Shift_Del	DEL	G	G	-			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr11:9759806delG	uc001mhw.2	+	8	1226	c.1127delG	c.(1126-1128)CGCfs	p.R376fs	SWAP70_uc001mhv.2_Frame_Shift_Del_p.R376fs|SWAP70_uc001mhx.2_Frame_Shift_Del_p.R318fs	NM_015055	NP_055870	Q9UH65	SWP70_HUMAN	SWAP-70 protein	376	Potential.					cytoplasm|lamellipodium|nucleus|plasma membrane	calcium ion binding|DNA binding			ovary(2)|central_nervous_system(1)	3				all cancers(16;1.21e-10)|Epithelial(150;2.81e-09)|BRCA - Breast invasive adenocarcinoma(625;0.00649)		GAAAAGAAACGCCTTCAGACT	0.478			NA											16	76	---	---	---	---	NA	NA	NA	NA	NA
ZIC2	7546	broad.mit.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	CCA	CCA	-	-	CCA	CCA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr13:100635008_100635010delCCA	uc001von.2	+	1	690_692	c.690_692delCCA	c.(688-693)GCCCAC>GCC	p.H239del		NM_007129	NP_009060	O95409	ZIC2_HUMAN	zinc finger protein of the cerebellum 2	239	Necessary for interaction with MDFIC and transcriptional activation or repression (By similarity).|Poly-His.		Missing.|H -> HH.		brain development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|visual perception	cytoplasm|nucleus	chromatin DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CAGCCGCGGCccaccaccaccac	0.522	Pancreas(97;119 1522 31925 44771 48764)		NA											7	82	---	---	---	---	NA	NA	NA	NA	NA
FANCM	57697	broad.mit.edu	37	14	45639873	45639873	+	Frame_Shift_Del	DEL	G	G	-			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:45639873delG	uc001wwd.3	+	12	2183	c.2084delG	c.(2083-2085)AGGfs	p.R695fs	FANCM_uc010anf.2_Frame_Shift_Del_p.R669fs|FANCM_uc001wwe.3_Frame_Shift_Del_p.R231fs	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	695					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TATAGATTAAGGGACAGTGAT	0.294			NA						Involved_in_tolerance_or_repair_of_DNA_crosslinks	FanconAnemia				12	66	---	---	---	---	NA	NA	NA	NA	NA
FRMD6	122786	broad.mit.edu	37	14	52178252	52178252	+	Frame_Shift_Del	DEL	A	A	-			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr14:52178252delA	uc001wzd.2	+	8	1003	c.718delA	c.(718-720)AAAfs	p.K240fs	FRMD6_uc001wzb.2_Frame_Shift_Del_p.K232fs|FRMD6_uc001wzc.2_Frame_Shift_Del_p.K232fs|FRMD6_uc001wze.2_Frame_Shift_Del_p.K163fs|FRMD6_uc001wzf.2_5'Flank	NM_152330	NP_689543	Q96NE9	FRMD6_HUMAN	FERM domain containing 6	240	FERM.					cytoskeleton|mitochondrion|plasma membrane	binding			ovary(1)|breast(1)|central_nervous_system(1)	3	all_epithelial(31;0.0163)|Breast(41;0.089)					CCTACAGGATAAAAGGGAAAT	0.323			NA											8	53	---	---	---	---	NA	NA	NA	NA	NA
ATP8B3	148229	broad.mit.edu	37	19	1796145	1796145	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr19:1796145delC	uc002ltw.2	-	17	2107	c.1873delG	c.(1873-1875)GAGfs	p.E625fs	ATP8B3_uc002ltv.2_Frame_Shift_Del_p.E578fs|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	625	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCCGTTCCTCCCCCAGCTCC	0.677			NA									OREG0025127	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	63	---	---	---	---	NA	NA	NA	NA	NA
LOC401010	401010	broad.mit.edu	37	2	132200298	132200299	+	Frame_Shift_Ins	INS	-	-	G			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr2:132200298_132200299insG	uc002tst.2	-	1	2169_2170	c.1703_1704insC	c.(1702-1704)GCGfs	p.A568fs		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						GGGCCAGCCCCGCCTCTGCGTC	0.53			NA											9	23	---	---	---	---	NA	NA	NA	NA	NA
NIPBL	25836	broad.mit.edu	37	5	37049317	37049317	+	Frame_Shift_Del	DEL	T	T	-			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr5:37049317delT	uc003jkl.3	+	40	7367	c.6868delT	c.(6868-6870)TTTfs	p.F2290fs	NIPBL_uc003jkk.3_Frame_Shift_Del_p.F2290fs|NIPBL_uc003jkn.2_5'Flank	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2290					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			GCTTGAGGCATTTTTTCACAC	0.403			NA											7	2137	---	---	---	---	NA	NA	NA	NA	NA
IFNA7	3444	broad.mit.edu	37	9	21202041	21202041	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-6774-01A-21D-1855-08	TCGA-44-6774-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	f9cc1d71-bece-4693-b953-3e73d1b6c11c	7d906a56-6db5-4619-948c-30a21f5c40c9	g.chr9:21202041delC	uc003zop.1	-	1	164	c.124delG	c.(124-126)GCAfs	p.A42fs	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	42					blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CCCATTTGTGCCAGGAGTATC	0.512			NA											49	223	---	---	---	---	NA	NA	NA	NA	NA
