Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ESPNP	284729	broad.mit.edu	37	1	17033809	17033809	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:17033809G>T	uc001azn.1	-	4	670	c.556C>A	c.(556-558)CAC>AAC	p.H186N	ESPNP_uc010ocj.1_3'UTR	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CGCAGGCAGTGGGTGCAGTGG	0.502			NA											4	33					0.000602214	0.000639853	0.000602	1	0
SLC9A1	6548	broad.mit.edu	37	1	27480730	27480730	+	Silent	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:27480730G>C	uc001bnm.2	-	1	722	c.96C>G	c.(94-96)CTC>CTG	p.L32L	SLC9A1_uc010ofk.1_5'UTR|SLC9A1_uc001bnn.2_Silent_p.L32L	NM_003047	NP_003038	P19634	SL9A1_HUMAN	solute carrier family 9, isoform A1	32	Helical; Name=M1; (Potential).				regulation of pH	integral to membrane	sodium:hydrogen antiporter activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;2.19e-50)|OV - Ovarian serous cystadenocarcinoma(117;1.8e-29)|Colorectal(126;7.61e-09)|COAD - Colon adenocarcinoma(152;9.32e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000521)|KIRC - Kidney renal clear cell carcinoma(1967;0.00079)|STAD - Stomach adenocarcinoma(196;0.00125)|READ - Rectum adenocarcinoma(331;0.046)	Amiloride(DB00594)	CATGGCTCCTGAGAACAGGCA	0.607			NA											17	73					0	0	0.00499	0	0
GRIK3	2899	broad.mit.edu	37	1	37307529	37307529	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:37307529G>A	uc001caz.2	-	10	1473	c.1338C>T	c.(1336-1338)TTC>TTT	p.F446F	GRIK3_uc001cba.1_Silent_p.F446F	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	446	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	GAAACATGACGAAGGGCTCCT	0.577			NA											6	98					0	0	0.001984	0	0
EIF2B3	8891	broad.mit.edu	37	1	45323445	45323445	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:45323445C>A	uc001cmt.1	-	11	1364	c.1237G>T	c.(1237-1239)GCT>TCT	p.A413S	EIF2B3_uc001cmu.1_Intron|EIF2B3_uc001cmv.1_Missense_Mutation_p.A387S	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	413					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					TCGATCACAGCATTGTTGCAG	0.418	Colon(26;357 658 2581 11857 12657)		NA											52	60					6.56871e-35	9.86834e-35	0.01441	1	0
INSL5	10022	broad.mit.edu	37	1	67263744	67263744	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:67263744C>A	uc001dcw.2	-	2	395	c.360G>T	c.(358-360)TTG>TTT	p.L120F		NM_005478	NP_005469	Q9Y5Q6	INSL5_HUMAN	insulin-like 5 precursor	120						extracellular region	hormone activity				0						CAGTGCAACACAAAGTTTGTA	0.443			NA											13	58					1.05317e-09	1.23251e-09	0.00245	1	0
C1orf173	127254	broad.mit.edu	37	1	75065541	75065541	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:75065541G>C	uc001dgg.2	-	11	1783	c.1564C>G	c.(1564-1566)CAA>GAA	p.Q522E	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.Q316E	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	522	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCATTCATTTGAACATCAGCC	0.383			NA											33	140					0	0	0.003271	0	0
GBP4	115361	broad.mit.edu	37	1	89662846	89662846	+	Missense_Mutation	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:89662846A>G	uc001dnb.2	-	2	298	c.182T>C	c.(181-183)CTA>CCA	p.L61P		NM_052941	NP_443173	Q96PP9	GBP4_HUMAN	guanylate binding protein 4	61	GTP (By similarity).					cytoplasm	GTP binding|GTPase activity				0				all cancers(265;0.00723)|Epithelial(280;0.0291)		TGTGCGGTATAGCCCTACAAT	0.478			NA											27	35					0	0	0.005443	0	0
SNX7	51375	broad.mit.edu	37	1	99156702	99156702	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:99156702G>A	uc010ouc.1	+	3	487	c.435G>A	c.(433-435)AAG>AAA	p.K145K	SNX7_uc001dsa.2_Silent_p.K81K|SNX7_uc010oud.1_Silent_p.K145K	NM_015976	NP_057060	Q9UNH6	SNX7_HUMAN	sorting nexin 7 isoform a	81	PX.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		all_epithelial(167;7.64e-07)|all_lung(203;0.0006)|Lung NSC(277;0.00137)		Epithelial(280;0.0521)|all cancers(265;0.0687)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.207)|Colorectal(170;0.234)		TTTGGTTGAAGGGAAAACTGG	0.368			NA											11	30					0	0	0.008291	0	0
SNX7	51375	broad.mit.edu	37	1	99203889	99203889	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:99203889G>T	uc010ouc.1	+	8	1274	c.1222G>T	c.(1222-1224)GAT>TAT	p.D408Y	SNX7_uc001dsa.2_Intron|SNX7_uc010oud.1_Missense_Mutation_p.D353Y	NM_015976	NP_057060	Q9UNH6	SNX7_HUMAN	sorting nexin 7 isoform a	344					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		all_epithelial(167;7.64e-07)|all_lung(203;0.0006)|Lung NSC(277;0.00137)		Epithelial(280;0.0521)|all cancers(265;0.0687)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.207)|Colorectal(170;0.234)		TATGCAAAATGATATCAAGTT	0.338			NA											25	79					4.87955e-14	6.25435e-14	0.005443	1	0
ANKRD35	148741	broad.mit.edu	37	1	145561641	145561641	+	Silent	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:145561641A>G	uc001eob.1	+	10	1437	c.1329A>G	c.(1327-1329)CAA>CAG	p.Q443Q	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.Q286Q	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	443										ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAGGACAGCAACTGACTACCA	0.557	Melanoma(9;127 754 22988 51047)		NA											18	95					0	0	0.006122	0	0
PMF1	11243	broad.mit.edu	37	1	156203520	156203520	+	Splice_Site	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:156203520G>T	uc001fnq.2	+	3	391	c.368_splice	c.e3+1	p.W123_splice	PMF1_uc001fnr.2_Splice_Site_p.C123_splice|BGLAP_uc001fns.1_Splice_Site_p.W123_splice	NM_007221	NP_009152	Q6P1K2	PMF1_HUMAN	polyamine-modulated factor 1						cell division|chromosome segregation|mitotic prometaphase|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytosol|MIS12/MIND type complex|transcription factor complex	leucine zipper domain binding|transcription coactivator activity				0	Hepatocellular(266;0.158)					AGCCAGCCTGGTGAGAGTGGG	0.378	Pancreas(32;764 914 7316 34504 37150)|Ovarian(64;846 1195 21996 34382 40415)		NA											52	87					4.10826e-27	5.92397e-27	0.01441	1	0
ARHGEF11	9826	broad.mit.edu	37	1	156917973	156917973	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:156917973C>A	uc001fqo.2	-	23	3073	c.2033G>T	c.(2032-2034)AGG>ATG	p.R678M	ARHGEF11_uc010phu.1_Missense_Mutation_p.R94M|ARHGEF11_uc001fqn.2_Missense_Mutation_p.R718M	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	678					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CATCACTTACCTGCGGCCCAT	0.587			NA											13	33					4.36969e-10	5.20816e-10	0.001855	1	0
FCRL2	79368	broad.mit.edu	37	1	157745565	157745565	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:157745565C>G	uc001fre.2	-	2	111	c.52G>C	c.(52-54)GAT>CAT	p.D18H	FCRL2_uc010phz.1_Missense_Mutation_p.D18H|FCRL2_uc009wsp.2_Missense_Mutation_p.D18H|FCRL2_uc010pia.1_Missense_Mutation_p.D18H	NM_030764	NP_110391	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2 precursor	18					cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			ovary(1)|pancreas(1)	2	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GAGGACTCACCTGCCTGTTCA	0.438			NA											7	32					0	0	0.001984	0	0
OR6N1	128372	broad.mit.edu	37	1	158736044	158736044	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:158736044C>T	uc010piq.1	-	1	429	c.429G>A	c.(427-429)GAG>GAA	p.E143E		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CAATGGCAATCTCTGCACAAA	0.537			NA											12	34					0	0	0.013537	0	0
ITLN1	55600	broad.mit.edu	37	1	160849122	160849122	+	Silent	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:160849122G>T	uc001fxc.2	-	7	884	c.768C>A	c.(766-768)GTC>GTA	p.V256V		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	256					positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TACATCCGGTGACCCTCATTC	0.423			NA											46	88					8.72198e-27	1.25209e-26	0.01441	1	0
NUF2	83540	broad.mit.edu	37	1	163315514	163315514	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:163315514G>T	uc001gcq.1	+	11	1154	c.854G>T	c.(853-855)TGC>TTC	p.C285F	NUF2_uc001gcp.2_Missense_Mutation_p.C285F|NUF2_uc001gcr.1_Missense_Mutation_p.C285F|NUF2_uc009wvc.1_Intron	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	285	Interaction with the N-terminus of NDC80.|Potential.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					TCAGTTGACTGCCTGCCTTCA	0.368			NA											33	77					1.22384e-17	1.675e-17	0.013726	1	0
DUSP27	92235	broad.mit.edu	37	1	167097826	167097826	+	Missense_Mutation	SNP	A	A	C	rs111745868	byFrequency	TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:167097826A>C	uc001geb.1	+	5	3458	c.3458A>C	c.(3457-3459)CAG>CCG	p.Q1153P		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1153					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						ACCAAGCTGCAGAAAAGGAGG	0.527			NA											13	27					0	0	0.003163	0	0
C1orf9	51430	broad.mit.edu	37	1	172579150	172579150	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:172579150G>C	uc001giq.3	+	24	3832	c.3516G>C	c.(3514-3516)CAG>CAC	p.Q1172H	C1orf9_uc009wwd.2_Missense_Mutation_p.Q1128H|C1orf9_uc010pmn.1_Missense_Mutation_p.Q801H|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	1172					multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		CTTCATCACAGTCAGAAGAGT	0.403	Colon(43;174 953 11768 38880 47057)		NA											21	139					0	0	0.014323	0	0
HMCN1	83872	broad.mit.edu	37	1	185932971	185932971	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:185932971G>T	uc001grq.1	+	13	2271	c.2042G>T	c.(2041-2043)TGC>TTC	p.C681F	HMCN1_uc001grr.1_Missense_Mutation_p.C22F	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	681	Ig-like C2-type 3.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ATCTATGGTTGCCTAGCAAGT	0.328			NA											57	86					1.45723e-30	2.1298e-30	0.01441	1	0
FAM5C	339479	broad.mit.edu	37	1	190067402	190067402	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:190067402G>T	uc001gse.1	-	8	2279	c.2047C>A	c.(2047-2049)CTG>ATG	p.L683M	FAM5C_uc010pot.1_Missense_Mutation_p.L581M	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	683						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TGCAAAATCAGGTCCCGAATT	0.463			NA											58	84					7.10663e-31	1.05295e-30	0.01441	1	0
PTPN14	5784	broad.mit.edu	37	1	214557195	214557195	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:214557195C>G	uc001hkk.1	-	13	2274	c.2003G>C	c.(2002-2004)CGC>CCC	p.R668P	PTPN14_uc010pty.1_Missense_Mutation_p.R569P	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	668					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GAGCGTGTTGCGGCGAGCCAT	0.647	Colon(92;557 1424 24372 34121 40073)		NA											14	29					0	0	0.004007	0	0
PRSS38	339501	broad.mit.edu	37	1	228003938	228003938	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:228003938C>A	uc001hrh.2	+	2	296	c.296C>A	c.(295-297)GCG>GAG	p.A99E		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	99	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						CTGTCAGCTGCGCACTGCTTT	0.672			NA											49	102					1.30916e-28	1.89623e-28	0.01441	1	0
RYR2	6262	broad.mit.edu	37	1	237880546	237880547	+	Missense_Mutation	DNP	CG	CG	TC			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:237880546_237880547CG>TC	uc001hyl.1	+	72	10492_10493	c.10372_10373CG>TC	c.(10372-10374)CGG>TCG	p.R3458S	RYR2_uc010pxz.1_Missense_Mutation_p.R413S	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3458					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CAAAGGAGATCGGTATTCCATG	0.495			NA											19	12					0	0	0.004672	0	0
RYR2	6262	broad.mit.edu	37	1	237947838	237947838	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:237947838G>T	uc001hyl.1	+	90	12946	c.12826G>T	c.(12826-12828)GTG>TTG	p.V4276L	RYR2_uc010pya.1_Missense_Mutation_p.V691L	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4276					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AAAGATGACCGTGAAGGACAT	0.468			NA											23	26					1.96895e-08	2.25521e-08	0.00278	1	0
OR2L13	284521	broad.mit.edu	37	1	248263049	248263049	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:248263049C>A	uc001ids.2	+	3	709	c.372C>A	c.(370-372)GCC>GCA	p.A124A		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			GTTATTTGGCCATCTGCCACT	0.502			NA											61	273					3.95532e-38	5.99797e-38	0.01441	1	0
OR2L13	284521	broad.mit.edu	37	1	248263312	248263312	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:248263312G>T	uc001ids.2	+	3	972	c.635G>T	c.(634-636)GGC>GTC	p.G212V		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CCTTTCATTGGCATCACTTCT	0.428			NA											35	74					2.42023e-17	3.2846e-17	0.003271	1	0
VIM	7431	broad.mit.edu	37	10	17275634	17275634	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:17275634G>T	uc001iou.2	+	4	1086	c.673G>T	c.(673-675)GAA>TAA	p.E225*	VIM_uc001iov.1_Nonsense_Mutation_p.E225*|VIM_uc001iow.1_RNA|VIM_uc001iox.1_Nonsense_Mutation_p.E225*|VIM_uc001ioy.1_Nonsense_Mutation_p.E225*|VIM_uc001ioz.1_RNA|VIM_uc001ipb.1_RNA|VIM_uc009xjv.1_Nonsense_Mutation_p.E225*|VIM_uc001ipc.1_Nonsense_Mutation_p.E225*	NM_003380	NP_003371	P08670	VIME_HUMAN	vimentin	225	Rod.|Coil 1B.				cellular component disassembly involved in apoptosis|cellular component movement|interspecies interaction between organisms|muscle filament sliding	cytosol|intermediate filament	protein C-terminus binding|structural constituent of cytoskeleton			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4						ACGCAAAGTGGAATCTTTGCA	0.458			NA											30	38					4.74835e-14	6.11043e-14	0.010818	1	0
SLC39A12	221074	broad.mit.edu	37	10	18270306	18270307	+	Nonsense_Mutation	DNP	GG	GG	CT			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:18270306_18270307GG>CT	uc001ipo.2	+	6	1263_1264	c.990_991GG>CT	c.(988-993)AAGGAG>AACTAG	p.330_331KE>N*	SLC39A12_uc001ipn.2_Nonsense_Mutation_p.330_331KE>N*|SLC39A12_uc001ipp.2_Nonsense_Mutation_p.330_331KE>N*|SLC39A12_uc010qck.1_Nonsense_Mutation_p.196_197KE>N*	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	330_331	Cytoplasmic (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TCATTTCTAAGGAGGACTTTAA	0.485			NA											26	60					0	0	0.004672	0	0
ZEB1	6935	broad.mit.edu	37	10	31810827	31810827	+	Missense_Mutation	SNP	A	A	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:31810827A>C	uc001ivs.3	+	7	2627	c.2564A>C	c.(2563-2565)GAA>GCA	p.E855A	ZEB1_uc001ivr.3_Missense_Mutation_p.E637A|ZEB1_uc010qee.1_Missense_Mutation_p.E637A|ZEB1_uc010qef.1_Missense_Mutation_p.E637A|ZEB1_uc009xlj.1_Missense_Mutation_p.E781A|ZEB1_uc010qeg.1_Missense_Mutation_p.E714A|ZEB1_uc009xlk.1_Missense_Mutation_p.E637A|ZEB1_uc001ivt.3_Missense_Mutation_p.E637A|ZEB1_uc001ivu.3_Missense_Mutation_p.E856A|ZEB1_uc001ivv.3_Missense_Mutation_p.E835A|ZEB1_uc010qeh.1_Missense_Mutation_p.E788A|ZEB1_uc009xlo.1_Missense_Mutation_p.E838A|ZEB1_uc009xlp.2_Missense_Mutation_p.E839A	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	855					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GCAGTCCAAGAACCACCCTTG	0.438	Ovarian(40;423 959 14296 36701 49589)		NA											26	52					0	0	0.00632	0	0
PPYR1	5540	broad.mit.edu	37	10	47087797	47087797	+	Silent	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:47087797G>T	uc001jee.2	+	3	1433	c.1014G>T	c.(1012-1014)CTG>CTT	p.L338L	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.L338L	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	338	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						CCCTGGTGCTGACTTGCCAGC	0.567			NA											21	83					5.26018e-13	6.61104e-13	0.012319	1	0
GDF2	2658	broad.mit.edu	37	10	48413967	48413967	+	Missense_Mutation	SNP	C	C	G	rs41314469		TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:48413967C>G	uc001jfa.1	-	2	1064	c.901G>C	c.(901-903)GAG>CAG	p.E301Q		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	301					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GTGTCCTCCTCGTGACTGCTC	0.622			NA											29	47					0	0	0.008361	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72434578	72434578	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:72434578C>T	uc001jrh.2	+	2	349	c.349C>T	c.(349-351)CTG>TTG	p.L117L	ADAMTS14_uc001jrg.2_Silent_p.L117L	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	117					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CGGGAAGGAACTGCACTTGCG	0.637			NA											18	23					0	0	0.006122	0	0
LDB3	11155	broad.mit.edu	37	10	88441336	88441336	+	Silent	SNP	C	C	T	rs45516997	byFrequency	TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:88441336C>T	uc001kdv.2	+	4	488	c.465C>T	c.(463-465)CTC>CTT	p.L155L	LDB3_uc010qml.1_Silent_p.L155L|LDB3_uc010qmm.1_Silent_p.L155L|LDB3_uc001kdu.2_Intron|LDB3_uc009xsz.2_Intron|LDB3_uc001kdr.2_Intron|LDB3_uc009xsy.2_Silent_p.L155L|LDB3_uc001kds.2_Silent_p.L155L|LDB3_uc001kdt.2_RNA	NM_007078	NP_009009	O75112	LDB3_HUMAN	LIM domain binding 3 isoform 1	155						cytoskeleton|perinuclear region of cytoplasm|pseudopodium	zinc ion binding			ovary(1)	1						TCTCCTCACTCGCCGAGGCCT	0.736			NA											3	42					0	0	0.004672	0	0
PANK1	53354	broad.mit.edu	37	10	91404709	91404709	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:91404709C>T	uc001kgp.1	-	1	507	c.351G>A	c.(349-351)GAG>GAA	p.E117E	PANK1_uc001kgn.1_5'Flank|PANK1_uc001kgo.1_5'Flank|PANK1_uc009xtu.1_5'Flank	NM_148977	NP_683878	Q8TE04	PANK1_HUMAN	pantothenate kinase 1 isoform alpha	117					coenzyme A biosynthetic process|pantothenate metabolic process	cytosol|nucleus	ATP binding|pantothenate kinase activity				0					Bezafibrate(DB01393)	GGAGGTCATTCTCCGGCGTCT	0.741			NA											8	18					0	0	0.00308	0	0
HPSE2	60495	broad.mit.edu	37	10	100374727	100374727	+	Silent	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:100374727C>G	uc001kpn.1	-	9	1314	c.1254G>C	c.(1252-1254)GTG>GTC	p.V418V	HPSE2_uc009xwc.1_Silent_p.V408V|HPSE2_uc001kpo.1_Silent_p.V350V|HPSE2_uc009xwd.1_Silent_p.V296V	NM_021828	NP_068600	Q8WWQ2	HPSE2_HUMAN	heparanase 2	418					carbohydrate metabolic process	intracellular|membrane	cation binding|heparanase activity			ovary(1)	1				Epithelial(162;1.8e-09)|all cancers(201;4.72e-07)		AGTGCCGTATCACGACATCAA	0.388			NA											53	113					0	0	0.01441	0	0
GSTO2	119391	broad.mit.edu	37	10	106037800	106037800	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:106037800C>T	uc001kyb.2	+	4	920	c.292C>T	c.(292-294)CCA>TCA	p.P98S	GSTO2_uc010qqw.1_Missense_Mutation_p.P98S|GSTO2_uc010qqx.1_Missense_Mutation_p.P98S|GSTO2_uc001kyc.2_Missense_Mutation_p.P70S|GSTO2_uc010qqy.1_Missense_Mutation_p.P70S	NM_183239	NP_899062	Q9H4Y5	GSTO2_HUMAN	glutathione S-transferase omega 2	98	GST N-terminal.				water-soluble vitamin metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.178)		Epithelial(162;1.14e-09)|all cancers(201;3.89e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0155)	Glutathione(DB00143)	TGATGCTTATCCAGGAAGGAA	0.408			NA											26	42					0	0	0.003954	0	0
NHLRC2	374354	broad.mit.edu	37	10	115636548	115636548	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:115636548C>T	uc001lax.1	+	3	812	c.600C>T	c.(598-600)GAC>GAT	p.D200D		NM_198514	NP_940916	Q8NBF2	NHLC2_HUMAN	NHL repeat containing 2	200	Thioredoxin.				cell redox homeostasis					ovary(1)	1				Epithelial(162;0.017)|all cancers(201;0.0187)		ATTACAAAGACAGGGGGCAGA	0.343			NA											23	39					0	0	0.014323	0	0
SLC18A2	6571	broad.mit.edu	37	10	119013583	119013584	+	Missense_Mutation	DNP	CC	CC	AA	rs11568719		TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:119013583_119013584CC>AA	uc001ldd.1	+	5	579_580	c.548_549CC>AA	c.(547-549)GCC>GAA	p.A183E	SLC18A2_uc009xyy.1_5'UTR	NM_003054	NP_003045	Q05940	VMAT2_HUMAN	solute carrier family 18 (vesicular monoamine),	183	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted monoamine transport vesicle membrane|integral to plasma membrane|membrane fraction	monoamine transmembrane transporter activity				0		Colorectal(252;0.19)		all cancers(201;0.029)	Alseroxylon(DB00386)|Reserpine(DB00206)|Tetrabenazine(DB04844)	AGCAGCTATGCCTTCCTGCTGA	0.594			NA											65	104					0	0	0.004672	0	0
RGS10	6001	broad.mit.edu	37	10	121275037	121275037	+	Missense_Mutation	SNP	T	T	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:121275037T>C	uc001lee.2	-	3	359	c.359A>G	c.(358-360)CAG>CGG	p.Q120R	RGS10_uc001lef.2_Missense_Mutation_p.Q114R|RGS10_uc001leg.2_Missense_Mutation_p.Q128R	NM_002925	NP_002916	O43665	RGS10_HUMAN	regulator of G-protein signaling 10 isoform b	120	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|protein binding|signal transducer activity				0		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.00105)|GBM - Glioblastoma multiforme(135;0.195)		CTGGAGTTTCTGGAACATCAG	0.512			NA											15	33					0	0	0.003163	0	0
MKI67	4288	broad.mit.edu	37	10	129907447	129907447	+	Missense_Mutation	SNP	T	T	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:129907447T>G	uc001lke.2	-	13	2852	c.2657A>C	c.(2656-2658)AAG>ACG	p.K886T	MKI67_uc001lkf.2_Missense_Mutation_p.K526T|MKI67_uc009yav.1_Missense_Mutation_p.K461T|MKI67_uc009yaw.1_Missense_Mutation_p.K36T	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	886					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CACAGGTAGCTTCTGTATATT	0.403			NA											9	214					0	0	0.006214	0	0
PPP2R2D	55844	broad.mit.edu	37	10	133753657	133753657	+	Nonsense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr10:133753657G>A	uc001lks.2	+	2	465	c.222G>A	c.(220-222)TGG>TGA	p.W74*	PPP2R2D_uc001lkr.2_5'UTR|PPP2R2D_uc001lkt.2_5'UTR|PPP2R2D_uc009yay.2_5'UTR	NM_018461	NP_060931	Q66LE6	2ABD_HUMAN	protein phosphatase 2, regulatory subunit B,	107	WD 2.				cell division|exit from mitosis|mitosis|signal transduction	cytoplasm|protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			skin(1)	1		all_cancers(35;2.16e-12)|all_epithelial(44;2.77e-09)|Lung NSC(174;0.00237)|all_lung(145;0.00354)|Colorectal(31;0.0124)|Breast(234;0.023)|all_neural(114;0.0299)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;7.86e-05)|Epithelial(32;8.82e-05)|all cancers(32;0.000106)|BRCA - Breast invasive adenocarcinoma(275;0.21)		AAATTAGGTGGTTACCACAAC	0.313			NA											17	17					0	0	0.00499	0	0
MUC5B	727897	broad.mit.edu	37	11	1267214	1267214	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:1267214C>T	uc009ycr.1	+	49	10979	c.10853C>T	c.(10852-10854)ACC>ATC	p.T3618I	MUC5B_uc001ltb.2_Missense_Mutation_p.T3038I	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3035	7 X Cys-rich subdomain repeats.|Thr-rich.|17 X approximate tandem repeats, Ser/Thr- rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CCCACAGCCACCAGTTCCAAA	0.612			NA											63	110					0	0	0.01441	0	0
SYT8	90019	broad.mit.edu	37	11	1858580	1858580	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:1858580C>T	uc001lue.1	+	9	1253	c.1125C>T	c.(1123-1125)CCC>CCT	p.P375P	SYT8_uc001lud.2_Silent_p.P375P|SYT8_uc001luf.1_Silent_p.P361P|TNNI2_uc010qxc.1_5'Flank|TNNI2_uc010qxd.1_5'Flank|TNNI2_uc010qxe.1_5'Flank	NM_138567	NP_612634	Q8NBV8	SYT8_HUMAN	synaptotagmin VIII	375	Cytoplasmic (Potential).					acrosomal vesicle|integral to membrane|plasma membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AGCGGCACCCCCTGCGGCCAG	0.726			NA											4	11					0	0	0.009096	0	0
IGF2AS	51214	broad.mit.edu	37	11	2167657	2167657	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:2167657C>T	uc010qxi.1	+	2	624	c.487C>T	c.(487-489)CCC>TCC	p.P163S	IGF2_uc001lvh.2_Intron|INS-IGF2_uc001lvi.2_Intron|IGF2AS_uc001lvk.1_RNA|IGF2AS_uc001lvl.1_RNA	NM_016412	NP_057496			RecName: Full=Putative insulin-like growth factor 2 antisense gene protein;          Short=IGF2-AS; AltName: Full=PEG8/IGF2AS protein;												0		all_epithelial(84;0.00018)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.00388)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;0.0025)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.153)		CTGGCGTCAGCCCGGCCGGCC	0.657			NA											3	21					0	0	0.004672	0	0
NUP98	4928	broad.mit.edu	37	11	3714511	3714511	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:3714511G>T	uc001lyh.2	-	27	4553	c.4262C>A	c.(4261-4263)CCA>CAA	p.P1421Q	NUP98_uc001lyi.2_Missense_Mutation_p.P1421Q|NUP98_uc001lyg.2_Missense_Mutation_p.P386Q	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	1438					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		GGAGGCTGTTGGTGGAAGCAA	0.463			NA	T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								50	115					7.77372e-23	1.10128e-22	0.01441	1	0
OR51D1	390038	broad.mit.edu	37	11	4661103	4661103	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:4661103G>A	uc010qyk.1	+	1	83	c.83G>A	c.(82-84)GGT>GAT	p.G28D		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	28	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTTTTGGTGGGTATCCCTGGC	0.512			NA											63	68					0	0	0.01441	0	0
OR51A7	119687	broad.mit.edu	37	11	4929367	4929367	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:4929367C>A	uc010qyq.1	+	1	768	c.768C>A	c.(766-768)ACC>ACA	p.T256T		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCATCATCACCCTGGCTGCCA	0.493			NA											90	113					1.13762e-57	1.75814e-57	0.01441	1	0
DCDC1	341019	broad.mit.edu	37	11	31312227	31312227	+	Missense_Mutation	SNP	A	A	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:31312227A>C	uc001msv.2	-	7	1129	c.927T>G	c.(925-927)CAT>CAG	p.H309Q	DCDC1_uc001msu.1_Intron	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	309					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					CTGTAATCTCATGCCCATCCT	0.348			NA											32	41					0	0	0.012213	0	0
LOC440040	440040	broad.mit.edu	37	11	49597924	49597924	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:49597924G>T	uc010rhy.1	+	2	515	c.37G>T	c.(37-39)GTT>TTT	p.V13F	LOC440040_uc009ymb.2_Missense_Mutation_p.V13F	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						TCTCTTTTCTGTTCATCACCA	0.512			NA											8	32					0.000157383	0.000168886	0.00308	1	0
OR4C12	283093	broad.mit.edu	37	11	50003155	50003155	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:50003155C>T	uc010ria.1	-	1	883	c.883G>A	c.(883-885)GCA>ACA	p.A295T		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TTCCTTATTGCACTTTTTACC	0.368			NA											13	51					0	0	0.001855	0	0
OR5F1	338674	broad.mit.edu	37	11	55762023	55762023	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:55762023G>C	uc010riv.1	-	1	79	c.79C>G	c.(79-81)CTC>GTC	p.L27V		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					AACAAAAAGAGGATAATCTGT	0.383			NA											34	45					0	0	0.012213	0	0
OR5M3	219482	broad.mit.edu	37	11	56237637	56237637	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:56237637G>C	uc010rjk.1	-	1	337	c.337C>G	c.(337-339)CTT>GTT	p.L113V		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ATCGCAGCAAGAATAAAAATT	0.373			NA											43	90					0	0	0.009718	0	0
SMTNL1	219537	broad.mit.edu	37	11	57317484	57317484	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:57317484G>A	uc009ymh.1	+	8	1438	c.1438G>A	c.(1438-1440)GTG>ATG	p.V480M		NM_001105565	NP_001099035	E9PPJ3	E9PPJ3_HUMAN	smoothelin-like 1	462										ovary(1)	1						GGATGACATGGTGCGGTTGGC	0.537			NA											12	27					0	0	0.013537	0	0
PPP2R5B	5526	broad.mit.edu	37	11	64694309	64694309	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:64694309G>A	uc001oby.2	+	3	910	c.325G>A	c.(325-327)GAG>AAG	p.E109K	PPP2R5B_uc001obz.2_Missense_Mutation_p.E109K	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	109					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						AGCCCTCAACGAGCTGGTGGA	0.642			NA											14	67					0	0	0.003163	0	0
DPP3	10072	broad.mit.edu	37	11	66264796	66264796	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:66264796C>T	uc001oig.1	+	16	1788	c.1726C>T	c.(1726-1728)CTG>TTG	p.L576L	DPP3_uc001oif.1_Silent_p.L576L|DPP3_uc010rpe.1_Silent_p.L565L|DPP3_uc001oih.1_5'UTR	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	576					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						GTTTGTGATCCTGAGAGTCTT	0.532			NA											18	40					0	0	0.006122	0	0
MYO7A	4647	broad.mit.edu	37	11	76853808	76853808	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:76853808C>A	uc001oyb.2	+	3	344	c.72C>A	c.(70-72)ATC>ATA	p.I24I	MYO7A_uc010rsl.1_Silent_p.I24I|MYO7A_uc010rsm.1_Silent_p.I13I|MYO7A_uc001oyc.2_Silent_p.I24I	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	24	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						ACGTGCCCATCGGGGCGGTGG	0.622			NA											3	11					0.00909568	0.00935638	0.009096	1	0
GRM5	2915	broad.mit.edu	37	11	88338066	88338066	+	Missense_Mutation	SNP	T	T	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:88338066T>C	uc001pcq.2	-	4	1414	c.1214A>G	c.(1213-1215)TAT>TGT	p.Y405C	GRM5_uc009yvm.2_Missense_Mutation_p.Y405C	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	405	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	GGCCATCGAATAGATGGCGTT	0.458			NA											12	59					0	0	0.010729	0	0
CNTN5	53942	broad.mit.edu	37	11	99941210	99941210	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:99941210C>A	uc001pga.2	+	11	1556	c.1217C>A	c.(1216-1218)CCT>CAT	p.P406H	CNTN5_uc009ywv.1_Missense_Mutation_p.P406H|CNTN5_uc001pfz.2_Missense_Mutation_p.P406H|CNTN5_uc001pgb.2_Missense_Mutation_p.P332H	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	406	Ig-like C2-type 4.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AGTGGGAGCCCTCTCCGATGG	0.458			NA											6	24					0.00116845	0.00123336	0.001168	1	0
TRPC6	7225	broad.mit.edu	37	11	101375428	101375429	+	Missense_Mutation	DNP	CG	CG	GA			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:101375428_101375429CG>GA	uc001pgk.3	-	2	696_697	c.271_272CG>TC	c.(271-273)CGC>TCC	p.R91S	TRPC6_uc009ywy.2_Missense_Mutation_p.R91S|TRPC6_uc009ywz.1_Missense_Mutation_p.R91S	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	91	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		GCTTGTGGAGCGATCACTAAAC	0.51	Colon(166;1315 1927 11094 12848 34731)		NA											32	108					0	0	0.004672	0	0
DRD2	1813	broad.mit.edu	37	11	113295259	113295259	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:113295259T>A	uc001pnz.2	-	1	436	c.115A>T	c.(115-117)ACA>TCA	p.T39S	DRD2_uc010rwv.1_Missense_Mutation_p.T39S|DRD2_uc001poa.3_Missense_Mutation_p.T39S|DRD2_uc001pob.3_Missense_Mutation_p.T39S|DRD2_uc009yyr.1_Missense_Mutation_p.T39S	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	39	Helical; Name=1; (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GTGAGCAGTGTGGCATAGTAG	0.587			NA											30	54					0	0	0.009535	0	0
DDX25	29118	broad.mit.edu	37	11	125778353	125778353	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr11:125778353G>A	uc001qcz.3	+	6	603	c.462G>A	c.(460-462)GTG>GTA	p.V154V	DDX25_uc010sbk.1_Silent_p.V154V	NM_013264	NP_037396	Q9UHL0	DDX25_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	154	Helicase ATP-binding.				mRNA export from nucleus|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|nucleus	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0021)|all_lung(97;0.0203)|Lung NSC(97;0.0203)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.14e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.046)		CGGCATTTGTGTTGGCAATGT	0.463			NA											68	95					0	0	0.01441	0	0
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	A	rs121913530		TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr12:25398285C>A	uc001rgp.1	-	2	215	c.34G>T	c.(34-36)GGT>TGT	p.G12C	KRAS_uc001rgq.1_Missense_Mutation_p.G12C|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12G(6)|p.G12N(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CCTACGCCACCAGCTCCAACT	0.348	Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)	G12C(UMUC3_URINARY_TRACT)|G12R(CAL62_THYROID)|G12C(CALU1_LUNG)|G12C(NCIH2030_LUNG)|G12C(LU99_LUNG)|G12C(NCIH1792_LUNG)|G12R(KP2_PANCREAS)|G12C(KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(NCIH2122_LUNG)|G12C(NCIH358_LUNG)|G12R(PSN1_PANCREAS)|G12C(KYSE410_OESOPHAGUS)|G12S(A549_LUNG)|G12R(HUPT3_PANCREAS)|G12R(TCCPAN2_PANCREAS)|G12C(HCC44_LUNG)|G12S(KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(SW1463_LARGE_INTESTINE)|G12C(NCIH23_LUNG)|G12C(LU65_LUNG)|G12C(NCIH1373_LUNG)|G12C(MIAPACA2_PANCREAS)|G12R(HS274T_BREAST)|G12S(LS123_LARGE_INTESTINE)|G12C(SW1573_LUNG)|G12C(SW837_LARGE_INTESTINE)|G12C(OV56_OVARY)|G12C(IALM_LUNG)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			10	5					0.00621372	0.00643279	0.006214	1	0
KIF21A	55605	broad.mit.edu	37	12	39734815	39734815	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr12:39734815T>A	uc001rly.2	-	15	2149	c.2003A>T	c.(2002-2004)CAG>CTG	p.Q668L	KIF21A_uc001rlw.2_5'UTR|KIF21A_uc001rlx.2_Missense_Mutation_p.Q655L|KIF21A_uc001rlz.2_Missense_Mutation_p.Q655L|KIF21A_uc010skl.1_Missense_Mutation_p.Q655L	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	668					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				CAGTCTTTTCTGGCTGTTTTC	0.363			NA											14	12					0	0	0.00245	0	0
KRT6A	3853	broad.mit.edu	37	12	52885323	52885323	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr12:52885323C>T	uc001sam.2	-	2	947	c.738G>A	c.(736-738)GTG>GTA	p.V246V		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	246	Coil 1B.|Rod.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		TGAAGTCCTCCACCAGGTCCT	0.542			NA											42	43					0	0	0.007835	0	0
AMDHD1	144193	broad.mit.edu	37	12	96350688	96350688	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr12:96350688G>A	uc001tel.1	+	4	641	c.535G>A	c.(535-537)GAG>AAG	p.E179K	AMDHD1_uc009zth.1_Missense_Mutation_p.E70K	NM_152435	NP_689648	Q96NU7	HUTI_HUMAN	amidohydrolase domain containing 1	179					histidine catabolic process to glutamate and formamide	cytosol	imidazolonepropionase activity|metal ion binding			central_nervous_system(1)	1						CGCCCGGCGGGAGCTGGACAT	0.602			NA											6	137					0	0	0.001168	0	0
GLT8D2	83468	broad.mit.edu	37	12	104393232	104393232	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr12:104393232C>T	uc001tkh.1	-	6	751	c.345G>A	c.(343-345)CCG>CCA	p.P115P	GLT8D2_uc001tki.1_Silent_p.P115P	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	115	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						TGAGGACCATCGGGTTGAATT	0.438			NA											66	43					0	0	0.01441	0	0
NAA25	80018	broad.mit.edu	37	12	112516501	112516501	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr12:112516501C>A	uc001ttm.2	-	6	542	c.522G>T	c.(520-522)CTG>CTT	p.L174L	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Silent_p.L146L|NAA25_uc009zwa.1_Silent_p.L174L	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	174						cytoplasm	protein binding	p.L174L(1)		ovary(1)|breast(1)|pancreas(1)	3						CAGCAAGGGGCAGAAACATTG	0.368			NA											55	42					7.37877e-41	1.12955e-40	0.01441	1	0
MTUS2	23281	broad.mit.edu	37	13	30062124	30062124	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:30062124C>A	uc001usl.3	+	9	3575	c.3517C>A	c.(3517-3519)CAC>AAC	p.H1173N	MTUS2_uc001usm.3_Missense_Mutation_p.H142N|MTUS2_uc010aau.2_Missense_Mutation_p.H52N|uc001usn.2_5'Flank	NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	1163	Potential.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GCAGGATGACCACGACCACAA	0.577			NA											23	63					1.33986e-20	1.88163e-20	0.004656	1	0
FRY	10129	broad.mit.edu	37	13	32745188	32745188	+	Silent	SNP	A	A	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:32745188A>C	uc001utx.2	+	18	2428	c.1932A>C	c.(1930-1932)GCA>GCC	p.A644A	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	644					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GACATATTGCACAAAATTCTC	0.363			NA											41	85					0	0	0.010771	0	0
PDS5B	23047	broad.mit.edu	37	13	33247430	33247430	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:33247430G>A	uc010abf.2	+	8	941	c.783G>A	c.(781-783)GAG>GAA	p.E261E	PDS5B_uc001uuo.2_Silent_p.E261E|PDS5B_uc010abg.2_RNA|PDS5B_uc010teb.1_5'Flank	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	261					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		TAATTTTGGAGCTCTACAATA	0.338			NA											27	54					0	0	0.00632	0	0
TSC22D1	8848	broad.mit.edu	37	13	45149475	45149475	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:45149475T>A	uc001uzn.3	-	1	1227	c.736A>T	c.(736-738)AGT>TGT	p.S246C	TSC22D1_uc001uzo.1_Missense_Mutation_p.S246C	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	246					transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		ATGGATGCACTGGCCACAGCA	0.343			NA											26	23					0	0	0.003954	0	0
KLHL1	57626	broad.mit.edu	37	13	70535565	70535565	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:70535565C>T	uc001vip.2	-	3	1486	c.692G>A	c.(691-693)AGT>AAT	p.S231N	KLHL1_uc010thm.1_Missense_Mutation_p.S170N	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	231	BTB.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GGAGACTGAACTCAGAACAAG	0.438			NA											31	41					0	0	0.013726	0	0
SPRY2	10253	broad.mit.edu	37	13	80911269	80911269	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:80911269T>A	uc001vli.2	-	2	1550	c.572A>T	c.(571-573)TAC>TTC	p.Y191F	SPRY2_uc001vlj.2_Missense_Mutation_p.Y191F	NM_005842	NP_005833	O43597	SPY2_HUMAN	sprouty 2	191	SPR.|Cys-rich.				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of ERK1 and ERK2 cascade|positive regulation of gene expression|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein kinase B signaling cascade	cytosol|microtubule|ruffle membrane	protein serine/threonine kinase activator activity			ovary(1)|lung(1)	2	Medulloblastoma(90;0.18)	Acute lymphoblastic leukemia(28;0.218)|Breast(118;0.244)		GBM - Glioblastoma multiforme(99;0.0318)		AGGCCTTGGGTAGGTGCACTC	0.537			NA											32	48					0	0	0.008361	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453805	84453805	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:84453805C>A	uc001vlk.2	-	1	2724	c.1838G>T	c.(1837-1839)AGC>ATC	p.S613I		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	613	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		GGACACCCTGCTGGTGTCTAG	0.582			NA											14	29					1.49906e-05	1.64134e-05	0.00245	1	0
ING1	3621	broad.mit.edu	37	13	111372015	111372015	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:111372015C>T	uc001vri.2	+	2	1437	c.1005C>T	c.(1003-1005)GCC>GCT	p.A335A	ING1_uc001vrf.2_Silent_p.A148A|ING1_uc001vrg.2_Silent_p.A123A|ING1_uc001vrh.2_Silent_p.A192A	NM_005537	NP_005528	Q9UK53	ING1_HUMAN	inhibitor of growth family, member 1 isoform D	335			A -> D (in HNSCC).		cell cycle|negative regulation of cell growth|negative regulation of cell proliferation	nucleus	zinc ion binding			ovary(1)	1	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.188)			GCTCCAAGGCCAAGGCGGAGC	0.627			NA											21	34					0	0	0.010504	0	0
ATP11A	23250	broad.mit.edu	37	13	113439475	113439475	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:113439475C>T	uc001vsi.3	+	2	154	c.66C>T	c.(64-66)GAC>GAT	p.D22D	ATP11A_uc001vsj.3_Silent_p.D22D|ATP11A_uc001vsm.1_5'UTR	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	22	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				ATTGGGTGGACAGCAGGACCA	0.567			NA									OREG0003855	type=REGULATORY REGION|Gene=ATP11A|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	42	73					0	0	0.006999	0	0
TFDP1	7027	broad.mit.edu	37	13	114288852	114288852	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr13:114288852G>T	uc001vtw.2	+	8	834	c.622G>T	c.(622-624)GAA>TAA	p.E208*	TFDP1_uc010tkd.1_Nonsense_Mutation_p.E113*|TFDP1_uc010tke.1_Nonsense_Mutation_p.E113*|TFDP1_uc001vty.3_Nonsense_Mutation_p.E208*|TFDP1_uc001vtx.2_Nonsense_Mutation_p.E88*	NM_007111	NP_009042	Q14186	TFDP1_HUMAN	transcription factor Dp-1	208	Dimerization (Potential).				cell proliferation|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|regulation of transcription from RNA polymerase II promoter	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding	p.E208*(1)		lung(4)|ovary(2)|skin(1)	7	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.132)|all_epithelial(44;0.0731)|all_lung(25;0.149)|Breast(118;0.153)	all cancers(43;0.0576)			TTTGAAGGTGGAAAGACAGAG	0.398			NA								TSP Lung(29;0.18)			30	56					3.99451e-17	5.39844e-17	0.009535	1	0
RNASE3	6037	broad.mit.edu	37	14	21360027	21360027	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr14:21360027G>A	uc001vyj.2	+	2	236	c.182G>A	c.(181-183)CGA>CAA	p.R61Q		NM_002935	NP_002926	P12724	ECP_HUMAN	ribonuclease, RNase A family, 3 (eosinophil	61					defense response to bacterium|RNA catabolic process	extracellular region|soluble fraction	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00453)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)	Pranlukast(DB01411)	AACAATTATCGATGGCGTTGC	0.443			NA											26	25					0	0	0.003954	0	0
RNF31	55072	broad.mit.edu	37	14	24624848	24624848	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr14:24624848G>C	uc001wmn.1	+	14	2689	c.2440G>C	c.(2440-2442)GAG>CAG	p.E814Q	RNF31_uc001wml.1_Missense_Mutation_p.E663Q|RNF31_uc010alg.1_Missense_Mutation_p.E573Q|RNF31_uc001wmo.1_Missense_Mutation_p.E281Q|RNF31_uc001wmp.2_RNA|RNF31_uc010alh.1_Missense_Mutation_p.W6C	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	814	IBR-type 1.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		TGAGCAGCTGGAGGCAACTTG	0.453			NA											33	78					0	0	0.012213	0	0
PELI2	57161	broad.mit.edu	37	14	56746457	56746457	+	Missense_Mutation	SNP	G	G	A	rs151092148		TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr14:56746457G>A	uc001xch.2	+	3	557	c.271G>A	c.(271-273)GTG>ATG	p.V91M		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	91					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						GACTGTGGTGGTGGAGTACAC	0.303			NA											38	63					0	0	0.010771	0	0
SYNE2	23224	broad.mit.edu	37	14	64634321	64634322	+	Missense_Mutation	DNP	CC	CC	AT			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr14:64634321_64634322CC>AT	uc001xgm.2	+	92	17099_17100	c.16869_16870CC>AT	c.(16867-16872)AGCCTT>AGATTT	p.5623_5624SL>RF	SYNE2_uc001xgl.2_Missense_Mutation_p.5623_5624SL>RF|SYNE2_uc010apy.2_Missense_Mutation_p.2008_2009SL>RF|SYNE2_uc001xgn.2_Missense_Mutation_p.585_586SL>RF|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_5'UTR|SYNE2_uc001xgq.2_5'UTR	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5623_5624	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TGGCTAACAGCCTTCCTGAGCT	0.455			NA											17	46					0	0	0.004672	0	0
NRXN3	9369	broad.mit.edu	37	14	79175866	79175866	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr14:79175866G>C	uc001xun.2	+	4	900	c.409G>C	c.(409-411)GTG>CTG	p.V137L	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.V271L	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	510	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CTTCTTTGCCGTGGAACTCCT	0.507			NA											27	73					0	0	0.004656	0	0
STON2	85439	broad.mit.edu	37	14	81743750	81743750	+	Silent	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr14:81743750G>T	uc010tvu.1	-	4	2106	c.1905C>A	c.(1903-1905)ACC>ACA	p.T635T	STON2_uc001xvk.1_Silent_p.T635T|STON2_uc010tvt.1_Silent_p.T432T	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	635	MHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		ACTTTGTGGTGGTGGTGGGCA	0.517			NA											19	19					3.32936e-07	3.73397e-07	0.006122	1	0
FLRT2	23768	broad.mit.edu	37	14	86088015	86088015	+	Missense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr14:86088015A>T	uc001xvr.2	+	2	924	c.157A>T	c.(157-159)AGC>TGC	p.S53C	FLRT2_uc010atd.2_Missense_Mutation_p.S53C	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	53	Extracellular (Potential).|LRRNT.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TAATGAGCGAAGCTTGACCTC	0.512			NA											41	73					0	0	0.011902	0	0
Unknown	0	broad.mit.edu	37	15	22440670	22440670	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:22440670C>A	uc001yug.2	-	1	196	c.177G>T	c.(175-177)AGG>AGT	p.R59S						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).												NA						TCACGTCCAGCCTCAGGGCAC	0.522			NA											14	42					1.05317e-09	1.23251e-09	0.00245	1	0
ARHGAP11A	9824	broad.mit.edu	37	15	32929036	32929036	+	Missense_Mutation	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:32929036A>G	uc001zgy.1	+	12	2784	c.2062A>G	c.(2062-2064)ATA>GTA	p.I688V	ARHGAP11A_uc010ubw.1_Missense_Mutation_p.I499V|ARHGAP11A_uc010ubx.1_Missense_Mutation_p.I499V	NM_014783	NP_055598	Q6P4F7	RHGBA_HUMAN	Rho GTPase activating protein 11A isoform 1	688					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			skin(3)|breast(2)|urinary_tract(1)	6		all_lung(180;1.3e-11)		all cancers(64;3.34e-21)|Epithelial(43;2.64e-15)|GBM - Glioblastoma multiforme(186;5.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.00112)|Lung(196;0.227)		AGAAACAACTATAAAATGTTA	0.323	Colon(45;757 1134 30003 36652)		NA											12	28					0	0	0.010729	0	0
RYR3	6263	broad.mit.edu	37	15	34145788	34145788	+	Silent	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:34145788A>G	uc001zhi.2	+	96	13774	c.13704A>G	c.(13702-13704)GCA>GCG	p.A4568A	RYR3_uc010bar.2_Silent_p.A4563A	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	4568					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TCTACGGAGCAGAACGCATTG	0.488			NA											9	32					0	0	0.004482	0	0
MGA	23269	broad.mit.edu	37	15	42058514	42058514	+	Missense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:42058514A>T	uc010ucy.1	+	24	8415	c.8234A>T	c.(8233-8235)AAA>ATA	p.K2745I	MGA_uc010ucz.1_Missense_Mutation_p.K2536I	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2706						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TTCTTACCTAAAAAGATTTCT	0.378			NA											13	10					0	0	0.00245	0	0
SPTBN5	51332	broad.mit.edu	37	15	42172497	42172497	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:42172497C>A	uc001zos.2	-	14	2900	c.2567G>T	c.(2566-2568)CGG>CTG	p.R856L		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	891	Spectrin 6.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		CTCCTCCAACCGGGCCCTGCG	0.667			NA											8	11					0.000673444	0.000713188	0.008291	1	0
PPIP5K1	9677	broad.mit.edu	37	15	43827131	43827131	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:43827131T>A	uc001zrw.2	-	31	4226	c.4043A>T	c.(4042-4044)AAG>ATG	p.K1348M	PPIP5K1_uc001zrx.1_Missense_Mutation_p.K1321M|PPIP5K1_uc001zru.2_Missense_Mutation_p.K1323M|PPIP5K1_uc001zry.3_Missense_Mutation_p.K1323M|PPIP5K1_uc001zrv.2_Missense_Mutation_p.K1109M	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	1348					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						ATGGACCAGCTTGCCAACCTC	0.552			NA											66	50					0	0	0.01441	0	0
UNC13C	440279	broad.mit.edu	37	15	54685309	54685309	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:54685309C>G	uc002ack.2	+	16	4777	c.4777C>G	c.(4777-4779)CCC>GCC	p.P1593A	UNC13C_uc002acl.2_Missense_Mutation_p.P423A	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1593					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGATTTTTGGCCCCAACTTAT	0.393			NA											29	35					0	0	0.009535	0	0
LDHAL6B	92483	broad.mit.edu	37	15	59499557	59499557	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:59499557C>A	uc002agb.2	+	1	516	c.418C>A	c.(418-420)CTA>ATA	p.L140I	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	140					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	AAACTCCAACCTAGTGATTAT	0.428			NA											75	78					3.41413e-29	4.96741e-29	0.01441	1	0
NOX5	79400	broad.mit.edu	37	15	69339834	69339834	+	Missense_Mutation	SNP	G	G	A	rs145431252		TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:69339834G>A	uc002ars.1	+	12	1794	c.1774G>A	c.(1774-1776)GGC>AGC	p.G592S	NOX5_uc002arp.1_Missense_Mutation_p.G574S|NOX5_uc002arq.1_Missense_Mutation_p.G546S|NOX5_uc010bid.1_Missense_Mutation_p.G557S|NOX5_uc002arr.1_Missense_Mutation_p.G564S|NOX5_uc010bie.1_Missense_Mutation_p.G392S|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	592	Helical; (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GGCAGGCATCGGCATCACCCC	0.582			NA											11	41					0	0	0.013537	0	0
TBC1D21	161514	broad.mit.edu	37	15	74178467	74178467	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:74178467C>A	uc002avz.2	+	7	711	c.628C>A	c.(628-630)CTC>ATC	p.L210I	TBC1D21_uc010ulc.1_Missense_Mutation_p.L174I	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	210	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(2)	2						CCTAGACATGCTCAGCACCCT	0.592			NA											26	36					9.39395e-14	1.19458e-13	0.00632	1	0
CHRNA3	1136	broad.mit.edu	37	15	78909405	78909405	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:78909405G>A	uc002bec.2	-	4	524	c.338C>T	c.(337-339)GCA>GTA	p.A113V	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_Missense_Mutation_p.A113V	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	113	Extracellular (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						GATCTTCTGTGCAGGGACACG	0.562			NA											13	11					0	0	0.003163	0	0
FURIN	5045	broad.mit.edu	37	15	91421523	91421523	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:91421523G>T	uc002bpu.1	+	8	1045	c.829G>T	c.(829-831)GGG>TGG	p.G277W		NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	277					cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			CTTCTTCCGTGGGGTTAGCCA	0.587			NA											17	14					5.26018e-13	6.61104e-13	0.012319	1	0
PRC1	9055	broad.mit.edu	37	15	91512795	91512795	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:91512795G>A	uc002bqm.2	-	13	1788	c.1631C>T	c.(1630-1632)GCC>GTC	p.A544V	PRC1_uc002bqn.2_Missense_Mutation_p.A544V|PRC1_uc002bqo.2_Missense_Mutation_p.A544V|PRC1_uc010uqs.1_Missense_Mutation_p.A503V	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	544	Unstructured, Arg/Lys rich.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					CTCCTTGTTGGCTCCATGCCT	0.552			NA											28	83					0	0	0.008361	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92647611	92647611	+	Missense_Mutation	SNP	T	T	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:92647611T>G	uc002bqx.2	+	4	1049	c.848T>G	c.(847-849)TTT>TGT	p.F283C	SLCO3A1_uc002bqy.2_Missense_Mutation_p.F283C|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.F225C	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	283	Helical; Name=6; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			CTCTTGATGTTTGGGTTTCCA	0.597			NA											36	102					0	0	0.003271	0	0
MCTP2	55784	broad.mit.edu	37	15	94841680	94841680	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:94841680C>T	uc002btj.2	+	1	251	c.186C>T	c.(184-186)GCC>GCT	p.A62A	MCTP2_uc010urg.1_Silent_p.A62A|MCTP2_uc002bti.2_Silent_p.A62A|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Silent_p.A62A|MCTP2_uc002btg.3_Silent_p.A62A|MCTP2_uc002bth.3_Silent_p.A62A	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	62					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AGGCCTTGGCCCCAGAGGGCC	0.607			NA											22	49					0	0	0.012319	0	0
OR4F15	390649	broad.mit.edu	37	15	102358657	102358657	+	Missense_Mutation	SNP	A	A	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:102358657A>C	uc010uts.1	+	1	268	c.268A>C	c.(268-270)AAG>CAG	p.K90Q		NM_001001674	NP_001001674	Q8NGB8	O4F15_HUMAN	olfactory receptor, family 4, subfamily F,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CAAGAAGCACAAGGCCATCTC	0.453			NA											75	89					0	0	0.01441	0	0
KREMEN2	79412	broad.mit.edu	37	16	3014592	3014592	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr16:3014592C>A	uc002csg.2	+	1	376	c.71C>A	c.(70-72)TCG>TAG	p.S24*	KREMEN2_uc010bsw.1_Nonsense_Mutation_p.S24*|KREMEN2_uc002csh.2_Nonsense_Mutation_p.S24*|KREMEN2_uc010uwl.1_Nonsense_Mutation_p.S24*|KREMEN2_uc010bsx.2_Nonsense_Mutation_p.S24*|KREMEN2_uc002csi.2_Nonsense_Mutation_p.S24*	NM_172229	NP_757384	Q8NCW0	KREM2_HUMAN	kringle-containing transmembrane protein 2	24					Wnt receptor signaling pathway	integral to membrane				central_nervous_system(2)	2						CGTGGGGCCTCGGCTGGGAGC	0.687			NA											9	34					0.00621372	0.00643279	0.006214	1	0
GTF3C1	2975	broad.mit.edu	37	16	27518169	27518169	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr16:27518169C>A	uc002dov.1	-	9	1591	c.1551G>T	c.(1549-1551)AAG>AAT	p.K517N	GTF3C1_uc002dou.2_Missense_Mutation_p.K517N	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	517						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GCTCCCTACCCTTGGTTGGGG	0.622			NA											4	3					8.12818e-05	8.75135e-05	0.001984	1	0
MVP	9961	broad.mit.edu	37	16	29848101	29848101	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr16:29848101G>T	uc002dui.2	+	7	815	c.731G>T	c.(730-732)CGC>CTC	p.R244L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010bzh.1_RNA|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Missense_Mutation_p.R244L|MVP_uc010vea.1_5'UTR	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	244	MVP 5.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						GTGTCCCGCCGCACTGGGGAG	0.637			NA											21	29					1.22574e-08	1.41398e-08	0.014323	1	0
SALL1	6299	broad.mit.edu	37	16	51173592	51173592	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr16:51173592G>A	uc010vgs.1	-	2	2572	c.2541C>T	c.(2539-2541)TCC>TCT	p.S847S	SALL1_uc010vgr.1_Silent_p.S750S|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	847					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AGCTGTCTTGGGAGGCGTCTG	0.488	GBM(103;1352 1446 1855 4775 8890)		NA											66	64					0	0	0.01441	0	0
RBL2	5934	broad.mit.edu	37	16	53515618	53515618	+	Silent	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr16:53515618A>T	uc002ehi.3	+	21	3238	c.3120A>T	c.(3118-3120)GTA>GTT	p.V1040V	RBL2_uc002ehj.2_Silent_p.V750V|RBL2_uc010vgw.1_Intron	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	1040					cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						ATCCATTTGTAAGAACAGGCT	0.313			NA											12	21					0	0	0.013537	0	0
LOC283867	283867	broad.mit.edu	37	16	65345315	65345315	+	Splice_Site	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr16:65345315A>T	uc010cdo.1	-	5		c.479_splice	c.e5+1		LOC283867_uc010cdp.1_Intron|LOC283867_uc002eol.1_Splice_Site					Homo sapiens cDNA clone IMAGE:5276218.												0				OV - Ovarian serous cystadenocarcinoma(108;0.17)		GGAGGTACTCACCTTCGTGAG	0.403			NA											30	73					0	0	0.012213	0	0
DNAH9	1770	broad.mit.edu	37	17	11865532	11865532	+	Missense_Mutation	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr17:11865532A>G	uc002gne.2	+	68	13260	c.13192A>G	c.(13192-13194)ATC>GTC	p.I4398V	DNAH9_uc010coo.2_Missense_Mutation_p.I3616V|DNAH9_uc002gnf.2_Missense_Mutation_p.I710V	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4398					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGGGGCCTACATCCATGGCCT	0.517			NA											33	29					0	0	0.013726	0	0
FAM18B2	201158	broad.mit.edu	37	17	15406338	15406338	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr17:15406338G>A	uc002goq.2	-	6	854	c.671C>T	c.(670-672)CCA>CTA	p.P224L	CDRT4_uc010vvw.1_Intron|FAM18B2_uc010vvx.1_Intron	NM_145301	NP_660344	Q96ET8	F18B2_HUMAN	hypothetical protein LOC201158 isoform 1	224						integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0872)|BRCA - Breast invasive adenocarcinoma(8;0.0581)|READ - Rectum adenocarcinoma(1115;0.0967)		ACGAAGAGGTGGAGAACTAAG	0.567			NA											16	49					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	17	21731316	21731316	+	Silent	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr17:21731316A>T	uc002gyy.3	+	2	743	c.618A>T	c.(616-618)GTA>GTT	p.V206V						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;												NA						AGATGGCGGTACTCTTTCTGA	0.517			NA											49	52					0	0	0.01441	0	0
ADAM11	4185	broad.mit.edu	37	17	42853010	42853010	+	Missense_Mutation	SNP	T	T	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr17:42853010T>G	uc002ihh.2	+	17	1451	c.1451T>G	c.(1450-1452)ATG>AGG	p.M484R	ADAM11_uc010wjd.1_Missense_Mutation_p.M284R|ADAM11_uc002ihi.2_5'Flank	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	484	Extracellular (Potential).|Disintegrin.				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				CACGACGCCATGTGCAGCGAC	0.667			NA											4	3					0	0	0.000602	0	0
HOXB6	3216	broad.mit.edu	37	17	46675197	46675197	+	Missense_Mutation	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr17:46675197A>G	uc002ins.1	-	3	641	c.316T>C	c.(316-318)TCG>CCG	p.S106P	HOXB6_uc010dbh.1_Missense_Mutation_p.S106P|HOXB6_uc002int.1_Missense_Mutation_p.S106P	NM_018952	NP_061825	P17509	HXB6_HUMAN	homeobox B6	106					anterior/posterior axis specification, embryo	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCGCAGTCCGACTTCCGCGGC	0.667			NA											2	7					0	0	0.004672	0	0
AKAP1	8165	broad.mit.edu	37	17	55195744	55195744	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr17:55195744G>A	uc002iux.2	+	9	2734	c.2503G>A	c.(2503-2505)GAT>AAT	p.D835N	AKAP1_uc010wnl.1_Missense_Mutation_p.D835N|AKAP1_uc010dcm.2_Missense_Mutation_p.D835N	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	835					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					TCCTGAAGACGATGACCAGTT	0.532			NA											37	39					0	0	0.00874	0	0
DDX42	11325	broad.mit.edu	37	17	61895427	61895427	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr17:61895427G>A	uc002jbu.2	+	19	2743	c.2486G>A	c.(2485-2487)AGC>AAC	p.S829N	DDX42_uc002jbv.2_Missense_Mutation_p.S829N|DDX42_uc002jbx.2_Missense_Mutation_p.S565N|DDX42_uc002jby.2_Missense_Mutation_p.S375N|DDX42_uc010wps.1_Missense_Mutation_p.S197N	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	829	Gly-rich.|His-rich.|Necessary for interaction with TP53BP2.				protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						AATCGGCATAGCGATAGTCCA	0.587			NA											20	52					0	0	0.010504	0	0
KCNJ2	3759	broad.mit.edu	37	17	68171198	68171198	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr17:68171198C>A	uc010dfg.2	+	2	419	c.18C>A	c.(16-18)ACC>ACA	p.T6T	KCNJ2_uc002jir.2_Silent_p.T6T	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	6	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					GTGTGCGAACCAACCGCTACA	0.493			NA											15	27					2.35188e-11	2.88843e-11	0.006122	1	0
SFRS2	6427	broad.mit.edu	37	17	74732914	74732914	+	Missense_Mutation	SNP	T	T	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr17:74732914T>C	uc002jsv.2	-	1	499	c.329A>G	c.(328-330)TAC>TGC	p.Y110C	SFRS2_uc002jsw.1_5'Flank|SFRS2_uc002jsx.1_RNA|SFRS2_uc002jsy.3_Missense_Mutation_p.Y110C|SFRS2_uc010wtg.1_Intron|MFSD11_uc002jsz.1_RNA|MFSD11_uc002jta.2_5'UTR|MIR636_hsa-mir-636|MI0003651_5'Flank|MFSD11_uc002jtb.2_5'Flank|MFSD11_uc010dha.2_5'Flank|MFSD11_uc002jtc.2_5'Flank|MFSD11_uc002jtd.3_5'Flank|MFSD11_uc010dhb.2_5'Flank|MFSD11_uc002jte.2_5'Flank	NM_003016	NP_003007	Q01130	SRSF2_HUMAN	splicing factor, arginine/serine-rich 2	110					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|protein binding|RNA binding|transcription corepressor activity				0						ACCGCCCCCGTACCTGCGGGG	0.602			NA											9	22					0	0	0.006214	0	0
CETN1	1068	broad.mit.edu	37	18	580499	580499	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr18:580499C>A	uc002kko.1	+	1	133	c.91C>A	c.(91-93)CAA>AAA	p.Q31K		NM_004066	NP_004057	Q12798	CETN1_HUMAN	centrin 1	31	EF-hand 1.				cell division|mitosis	spindle pole	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGATCAGAAGCAAGAAGTTCG	0.597			NA											16	12					1.3612e-06	1.50571e-06	0.003163	1	0
LAMA3	3909	broad.mit.edu	37	18	21461922	21461922	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr18:21461922G>T	uc002kuq.2	+	40	5221	c.5135G>T	c.(5134-5136)GGA>GTA	p.G1712V	LAMA3_uc002kur.2_Missense_Mutation_p.G1712V|LAMA3_uc002kus.3_Missense_Mutation_p.G103V|LAMA3_uc002kut.3_Missense_Mutation_p.G103V	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1712	Domain III A.|Laminin EGF-like 13.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AACACCGCGGGAGAGCACTGT	0.547			NA											10	20					1.08611e-07	1.23092e-07	0.010729	1	0
SLC39A6	25800	broad.mit.edu	37	18	33704551	33704551	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr18:33704551C>A	uc010dmy.2	-	3	1192	c.902G>T	c.(901-903)AGA>ATA	p.R301I	SLC39A6_uc002kzj.2_Missense_Mutation_p.R26I	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	301	Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						CAGACAAGATCTAGCATCAAT	0.383			NA											19	58					1.56452e-12	1.95112e-12	0.007413	1	0
FHOD3	80206	broad.mit.edu	37	18	34320650	34320650	+	Missense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr18:34320650A>T	uc002kzt.1	+	17	3129	c.3032A>T	c.(3031-3033)GAG>GTG	p.E1011V	FHOD3_uc002kzs.1_Missense_Mutation_p.E1028V|FHOD3_uc010dmz.1_Missense_Mutation_p.E743V|FHOD3_uc010dnb.1_Missense_Mutation_p.E7V	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	1011	FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				ACCGATGAGGAGAAGCAGAAA	0.488			NA											17	27					0	0	0.004007	0	0
SOCS6	9306	broad.mit.edu	37	18	67992908	67992908	+	Missense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr18:67992908A>T	uc002lkr.1	+	2	1320	c.1004A>T	c.(1003-1005)CAC>CTC	p.H335L	SOCS6_uc010dqq.2_Missense_Mutation_p.H335L	NM_004232	NP_004223	O14544	SOCS6_HUMAN	suppressor of cytokine signaling 6	335					defense response|JAK-STAT cascade|negative regulation of signal transduction|regulation of growth	cytoplasm				large_intestine(1)|lung(1)	2		Esophageal squamous(42;0.129)|Colorectal(73;0.152)				ACAGAAGCCCACGTGGCTGAA	0.488	Melanoma(84;1024 1361 24382 36583 42651)		NA											13	42					0	0	0.001855	0	0
FBXO15	201456	broad.mit.edu	37	18	71793305	71793305	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr18:71793305T>A	uc002lle.2	-	6	925	c.589A>T	c.(589-591)AAT>TAT	p.N197Y	FBXO15_uc002llf.2_Missense_Mutation_p.N273Y	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	197										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		TGACTCAGATTGTACTTTGCA	0.463			NA											27	93					0	0	0.008361	0	0
STK11	6794	broad.mit.edu	37	19	1221261	1221261	+	Nonsense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:1221261A>T	uc002lrl.1	+	6	1899	c.784A>T	c.(784-786)AAG>TAG	p.K262*		NM_000455	NP_000446	Q15831	STK11_HUMAN	serine/threonine protein kinase 11	262	Protein kinase.				anoikis|cell cycle arrest|energy reserve metabolic process|insulin receptor signaling pathway|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.0?(19)|p.?(2)|p.Y246fs*3(1)		lung(174)|cervix(35)|skin(15)|large_intestine(12)|pancreas(6)|gastrointestinal_tract_(site_indeterminate)(5)|stomach(4)|ovary(4)|breast(2)|upper_aerodigestive_tract(1)|testis(1)|liver(1)|biliary_tract(1)|small_intestine(1)|urinary_tract(1)|oesophagus(1)|prostate(1)|kidney(1)	266		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Renal(1328;0.0183)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.00942)|STAD - Stomach adenocarcinoma(1328;0.18)		CAACATCTACAAGTTGTTTGA	0.582			14	D|Mis|N|F|S		NSCLC|pancreatic	jejunal harmartoma|ovarian|testicular|pancreatic			Peutz-Jeghers_syndrome	TSP Lung(3;<1E-08)			12	4					0	0	0.001855	0	0
MUC16	94025	broad.mit.edu	37	19	8999521	8999521	+	Missense_Mutation	SNP	T	T	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:8999521T>G	uc002mkp.2	-	56	40858	c.40654A>C	c.(40654-40656)ACC>CCC	p.T13552P	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.T369P|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGCGGTAGGTGCAGATGGCA	0.592			NA											62	32					0	0	0.01441	0	0
KEAP1	9817	broad.mit.edu	37	19	10602746	10602746	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:10602746G>A	uc002moq.1	-	3	988	c.832C>T	c.(832-834)CCG>TCG	p.P278S	KEAP1_uc002mop.1_5'UTR|KEAP1_uc002mor.1_Missense_Mutation_p.P278S	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1	278	BACK.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			AGGAAGTTCGGCGTCAACGAG	0.612			NA											35	20					0	0	0.003755	0	0
AKAP8	10270	broad.mit.edu	37	19	15484083	15484083	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:15484083C>A	uc002nav.2	-	5	501	c.440G>T	c.(439-441)CGC>CTC	p.R147L	AKAP8_uc010dzy.2_5'UTR|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_5'UTR	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	147					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						GTAGCTGGGGCGGTAGGGGTT	0.642	GBM(190;1671 2163 3274 27186 30476)		NA											29	20					1.88708e-17	2.57185e-17	0.008361	1	0
NDUFA13	51079	broad.mit.edu	37	19	19626988	19626988	+	Missense_Mutation	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:19626988A>G	uc010xqy.1	+	1	449	c.190A>G	c.(190-192)ATC>GTC	p.I64V	TSSK6_uc002nmq.2_5'Flank|TSSK6_uc002nmr.2_5'Flank|NDUFA13_uc002nms.2_Missense_Mutation_p.I64V|NDUFA13_uc010xqx.1_Missense_Mutation_p.I64V	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	CGCCACACTCATCATGGCGGT	0.632			NA											4	43					0	0	0.009096	0	0
ZNF536	9745	broad.mit.edu	37	19	31040381	31040381	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:31040381C>T	uc002nsu.1	+	4	3993	c.3855C>T	c.(3853-3855)AGC>AGT	p.S1285S	ZNF536_uc010edd.1_Silent_p.S1285S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1285					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TTGCAAGTAGCACAGCAAATT	0.493			NA											41	59					0	0	0.00874	0	0
ZNF607	84775	broad.mit.edu	37	19	38189117	38189117	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:38189117G>T	uc002ohc.1	-	5	2511	c.1915C>A	c.(1915-1917)CAT>AAT	p.H639N	ZNF607_uc002ohb.1_Missense_Mutation_p.H638N	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	639	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			CCATCAGCATGAACGCTTTCA	0.378			NA											61	67					1.45723e-30	2.1298e-30	0.01441	1	0
CLPTM1	1209	broad.mit.edu	37	19	45488522	45488522	+	Silent	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:45488522G>T	uc002pai.2	+	6	648	c.633G>T	c.(631-633)CTG>CTT	p.L211L	CLPTM1_uc010ejv.1_Silent_p.L109L|CLPTM1_uc010xxf.1_Silent_p.L109L|CLPTM1_uc010xxg.1_Silent_p.L197L	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	211	Extracellular (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		CCAAGAACCTGCTGACAGGAG	0.537			NA											9	10					3.86212e-05	4.20022e-05	0.008291	1	0
PLA2G4C	8605	broad.mit.edu	37	19	48602932	48602932	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:48602932C>A	uc002phx.2	-	5	841	c.443G>T	c.(442-444)AGA>ATA	p.R148I	PLA2G4C_uc002phw.2_Missense_Mutation_p.R83I|PLA2G4C_uc010elr.2_Missense_Mutation_p.R148I|PLA2G4C_uc010xzd.1_Missense_Mutation_p.R158I|PLA2G4C_uc002phy.3_Missense_Mutation_p.R148I	NM_003706	NP_003697	Q9UP65	PA24C_HUMAN	phospholipase A2, group IVC isoform 1 precursor	148	PLA2c.				arachidonic acid metabolic process|glycerophospholipid catabolic process|inflammatory response|intracellular signal transduction|parturition	cytosol|membrane	calcium-independent phospholipase A2 activity|phospholipid binding			ovary(1)|skin(1)	2		all_cancers(25;2.84e-05)|all_lung(116;4.62e-05)|Lung NSC(112;7.61e-05)|all_epithelial(76;0.000192)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;8.09e-05)|all cancers(93;0.000517)|Epithelial(262;0.0135)|GBM - Glioblastoma multiforme(486;0.0717)		ACTTACTTCTCTGGTTTGCTT	0.522			NA											48	18					5.2432e-18	7.23741e-18	0.01441	1	0
RASIP1	54922	broad.mit.edu	37	19	49224080	49224080	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:49224080C>T	uc002pki.2	-	12	3064	c.2867G>A	c.(2866-2868)GGG>GAG	p.G956E	MAMSTR_uc002pkg.2_5'Flank|RASIP1_uc002pkh.2_Missense_Mutation_p.G217E	NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	956					signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		CACGGGAGGCCCATGGCGATA	0.612			NA											95	44					0	0	0.01441	0	0
ZNF835	90485	broad.mit.edu	37	19	57176448	57176448	+	Missense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:57176448A>T	uc010ygo.1	-	2	185	c.185T>A	c.(184-186)GTG>GAG	p.V62E	ZNF835_uc010ygn.1_Missense_Mutation_p.V40E	NM_001005850	NP_001005850			zinc finger protein 835									p.V62V(1)		pancreas(3)|skin(1)	4						CTTGCAGGCCACGGCCTCTGG	0.597			NA											22	14					0	0	0.014323	0	0
SULT1C3	442038	broad.mit.edu	37	2	108881780	108881780	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:108881780C>A	uc010ywo.1	+	7	888	c.888C>A	c.(886-888)AGC>AGA	p.S296R		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	296						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						TGGCAGGAAGCACCCTAACCT	0.463			NA											18	43					9.16793e-09	1.06138e-08	0.00499	1	0
PSD4	23550	broad.mit.edu	37	2	113955142	113955142	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:113955142G>A	uc002tjc.2	+	13	2571	c.2388G>A	c.(2386-2388)ACG>ACA	p.T796T	PSD4_uc002tjd.2_Silent_p.T417T|PSD4_uc002tje.2_Silent_p.T767T|PSD4_uc002tjf.2_Silent_p.T417T|PSD4_uc002tjg.2_5'UTR|PSD4_uc010yxs.1_Silent_p.A27A|PSD4_uc002tjh.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	796	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						CTGGAACAGCGCCATGGGGCA	0.547			NA											20	28					0	0	0.014323	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612			NA											5	10					0	0	0.000602	0	0
GPR148	344561	broad.mit.edu	37	2	131486911	131486911	+	Missense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:131486911A>T	uc002trv.1	+	1	189	c.187A>T	c.(187-189)ACA>TCA	p.T63S		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	63	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					GGCTGCAGCCACACTGGCTGT	0.632			NA											32	36					0	0	0.012213	0	0
NCKAP5	344148	broad.mit.edu	37	2	133636466	133636466	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:133636466C>G	uc002ttp.2	-	9	977	c.603G>C	c.(601-603)TTG>TTC	p.L201F	NCKAP5_uc002ttq.2_Missense_Mutation_p.L201F	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	201	Potential.						protein binding				0						TTTCATTCTCCAAAGCCAACG	0.403			NA											18	51					0	0	0.006122	0	0
LCT	3938	broad.mit.edu	37	2	136562352	136562352	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:136562352G>A	uc002tuu.1	-	10	4460	c.4449C>T	c.(4447-4449)GCC>GCT	p.A1483A		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1483	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GCTGGATGCTGGCGGCCAGCA	0.562			NA											14	51					0	0	0.004007	0	0
LRP1B	53353	broad.mit.edu	37	2	141294160	141294160	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:141294160C>A	uc002tvj.1	-	46	8604	c.7632G>T	c.(7630-7632)CTG>CTT	p.L2544L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2544	Extracellular (Potential).|LDL-receptor class A 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CACAGTAGAGCAGTTTTTCAT	0.408	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			51	65					4.86159e-25	6.9176e-25	0.01441	1	0
DLX2	1746	broad.mit.edu	37	2	172965613	172965613	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:172965613C>G	uc002uhn.2	-	3	857	c.645G>C	c.(643-645)GAG>GAC	p.E215D		NM_004405	NP_004396	Q07687	DLX2_HUMAN	distal-less homeobox 2	215						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.216)			CCGAGGGGATCTCACCACTTT	0.577	GBM(188;775 2993 11256 23072)		NA											8	39					0	0	0.00308	0	0
WIPF1	7456	broad.mit.edu	37	2	175437061	175437061	+	Silent	SNP	T	T	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:175437061T>G	uc002uiy.2	-	6	804	c.472A>C	c.(472-474)AGA>CGA	p.R158R	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Silent_p.R158R|WIPF1_uc010fqt.1_Silent_p.R158R|WIPF1_uc002ujc.1_Silent_p.R158R|WIPF1_uc002uiz.2_Silent_p.R158R|WIPF1_uc002ujb.1_Silent_p.R158R|WIPF1_uc010zep.1_Silent_p.R158R	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	158					actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						GGACCACTTCTGTGGCCTGGA	0.602			NA											18	64					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179396045	179396045	+	Silent	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:179396045A>T	uc010zfg.1	-	307	97817	c.97593T>A	c.(97591-97593)TCT>TCA	p.S32531S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.S26226S|TTN_uc010zfi.1_Silent_p.S26159S|TTN_uc010zfj.1_Silent_p.S26034S|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33458							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCAGATGCAGAGTGTTCAT	0.408			NA											61	70					0	0	0.01441	0	0
TTN	7273	broad.mit.edu	37	2	179584097	179584097	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:179584097C>A	uc010zfg.1	-	80	20512	c.20288G>T	c.(20287-20289)CGA>CTA	p.R6763L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R3424L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7690							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCAGAGACTCGGCACTCCAA	0.517			NA											31	95					1.08312e-15	1.44565e-15	0.009535	1	0
ZNF804A	91752	broad.mit.edu	37	2	185801006	185801006	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:185801006G>T	uc002uph.2	+	4	1477	c.883G>T	c.(883-885)GAG>TAG	p.E295*		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	295						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TCAAACTCAAGAGATAAAAGA	0.348			NA											38	34					1.36161e-19	1.9039e-19	0.004289	1	0
FAM171B	165215	broad.mit.edu	37	2	187627263	187627263	+	Nonsense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:187627263C>T	uc002ups.2	+	8	2306	c.2194C>T	c.(2194-2196)CAG>TAG	p.Q732*	FAM171B_uc002upr.1_Nonsense_Mutation_p.Q699*|FAM171B_uc002upt.2_Nonsense_Mutation_p.Q201*	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	732	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						AAGCATGCATCAGCCCAAGAT	0.483			NA											5	85					0	0	0.000602	0	0
MARS2	92935	broad.mit.edu	37	2	198570930	198570930	+	Silent	SNP	G	G	T	rs144114997		TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:198570930G>T	uc002uuq.2	+	1	844	c.801G>T	c.(799-801)CCG>CCT	p.P267P	uc002uup.2_Intron	NM_138395	NP_612404	Q96GW9	SYMM_HUMAN	methionine-tRNA synthetase 2 precursor	267					methionyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|methionine-tRNA ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3					L-Methionine(DB00134)	GGGGCATTCCGGTGCCCGGGG	0.547			NA											31	52					2.61193e-14	3.37462e-14	0.009535	1	0
SGOL2	151246	broad.mit.edu	37	2	201436615	201436615	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:201436615G>C	uc002uvw.2	+	7	1659	c.1546G>C	c.(1546-1548)GAG>CAG	p.E516Q	SGOL2_uc010zhd.1_Missense_Mutation_p.E516Q|SGOL2_uc010zhe.1_Missense_Mutation_p.E516Q	NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2 isoform 1	516					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)|skin(2)	4						ATTTCACCAGGAGAGTAAATT	0.313			NA											48	51					0	0	0.01441	0	0
RQCD1	9125	broad.mit.edu	37	2	219452361	219452361	+	Silent	SNP	A	A	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:219452361A>C	uc010zkh.1	+	5	483	c.483A>C	c.(481-483)ACA>ACC	p.T161T	RQCD1_uc002vih.1_Silent_p.T161T|RQCD1_uc010zki.1_Silent_p.T193T	NM_005444	NP_005435	Q92600	RCD1_HUMAN	RCD1 required for cell differentiation1 homolog	161					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|sex differentiation|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(1)|skin(1)	2		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000192)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TATTAACAACAGAAATTATCC	0.303			NA											9	17					0	0	0.006214	0	0
OBSL1	23363	broad.mit.edu	37	2	220432677	220432677	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:220432677G>A	uc010fwk.2	-	3	1354	c.1297C>T	c.(1297-1299)CGC>TGC	p.R433C	OBSL1_uc010fwl.1_5'Flank|OBSL1_uc002vmi.2_Missense_Mutation_p.R433C|OBSL1_uc002vmj.2_Missense_Mutation_p.R20C	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	433					cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		CGGGGCAGGCGCTTCAGGATG	0.637			NA											10	35					0	0	0.006214	0	0
PAX3	5077	broad.mit.edu	37	2	223160317	223160317	+	Silent	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:223160317G>T	uc010fwo.2	-	3	747	c.381C>A	c.(379-381)GGC>GGA	p.G127G	PAX3_uc002vmt.1_Silent_p.G127G|PAX3_uc002vmy.1_Silent_p.G126G|PAX3_uc002vmv.1_Silent_p.G127G|PAX3_uc002vmw.1_Silent_p.G127G|PAX3_uc002vmx.1_Silent_p.G127G|PAX3_uc002vmz.1_Silent_p.G127G|PAX3_uc002vna.1_Silent_p.G127G|CCDC140_uc002vnb.1_5'Flank	NM_181457	NP_852122	P23760	PAX3_HUMAN	paired box 3 isoform PAX3	127	Paired.				apoptosis|organ morphogenesis|positive regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		PAX3/FOXO1(749)|PAX3/NCOA1(8)|PAX3/NCOA2(4)	soft_tissue(761)|ovary(4)|skin(1)	766		Renal(207;0.0183)		Epithelial(121;4.13e-10)|all cancers(144;1.85e-07)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGCTGAACATGCCCGGGTTCT	0.542			NA	T	FOXO1A|NCOA1	alveolar rhabdomyosarcoma		Waardenburg syndrome; craniofacial-deafness-hand syndrome						17	58					3.32936e-07	3.73397e-07	0.006122	1	0
CPXM1	56265	broad.mit.edu	37	20	2774857	2774857	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr20:2774857C>A	uc002wgu.2	-	14	2248	c.2184G>T	c.(2182-2184)CGG>CGT	p.R728R	CPXM1_uc010gas.2_Silent_p.R654R	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	728					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						GTCCCCTTAGCCGCTCCAGGC	0.612			NA											29	69					2.08457e-15	2.74823e-15	0.010818	1	0
SPTLC3	55304	broad.mit.edu	37	20	13055137	13055137	+	Missense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr20:13055137A>T	uc002wod.1	+	4	888	c.599A>T	c.(598-600)CAT>CTT	p.H200L		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	200					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	AGCACCAGGCATGAAATGGGT	0.423			NA											73	109					0	0	0.01441	0	0
BPI	671	broad.mit.edu	37	20	36935979	36935979	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr20:36935979G>A	uc002xib.2	+	2	215	c.153G>A	c.(151-153)CAG>CAA	p.Q51Q		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	51					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				CCAGCCAGCAGGGGACGGCCG	0.592			NA											36	82					0	0	0.004878	0	0
PLCG1	5335	broad.mit.edu	37	20	39801184	39801184	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr20:39801184G>A	uc002xjp.1	+	26	3150	c.3029G>A	c.(3028-3030)CGC>CAC	p.R1010H	PLCG1_uc002xjo.1_Missense_Mutation_p.R1010H|PLCG1_uc010zwe.1_Missense_Mutation_p.R636H	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	1010	PI-PLC Y-box.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				CAGCTCTCCCGCATCTACCCC	0.542			NA											3	39					0	0	0.004672	0	0
SLC12A5	57468	broad.mit.edu	37	20	44682333	44682333	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr20:44682333C>A	uc010zxl.1	+	20	2809	c.2733C>A	c.(2731-2733)GTC>GTA	p.V911V	SLC12A5_uc002xrb.2_Silent_p.V888V	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	911	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CTGCGGAGGTCGAGGTGGTGG	0.542			NA											51	100					1.0442e-30	1.54007e-30	0.01441	1	0
TFAP2C	7022	broad.mit.edu	37	20	55206867	55206867	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr20:55206867G>T	uc002xya.2	+	3	784	c.541G>T	c.(541-543)GAC>TAC	p.D181Y	TFAP2C_uc010zzi.1_Missense_Mutation_p.D12Y	NM_003222	NP_003213	Q92754	AP2C_HUMAN	transcription factor AP-2 gamma	181					cell-cell signaling|male gonad development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Colorectal(105;0.229)			CCAGAATGTCGACGACCAGCA	0.557			NA											27	47					4.59853e-10	5.46075e-10	0.005443	1	0
TPTE	7179	broad.mit.edu	37	21	10942750	10942750	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr21:10942750T>A	uc002yip.1	-	13	1059	c.691A>T	c.(691-693)ACA>TCA	p.T231S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.T213S|TPTE_uc002yir.1_Missense_Mutation_p.T193S|TPTE_uc010gkv.1_Missense_Mutation_p.T93S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	231	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CCATCCCTTGTGTATCGCCTT	0.313			NA											76	437					0	0	0.01441	0	0
KRTAP6-1	337966	broad.mit.edu	37	21	31986046	31986046	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr21:31986046C>T	uc002yop.2	-	1	178	c.178G>A	c.(178-180)GGC>AGC	p.G60S	KRTAP20-1_uc011ade.1_5'Flank	NM_181602	NP_853633	Q3LI64	KRA61_HUMAN	keratin associated protein 6-1	60						cytosol|intermediate filament					0						CATCCATAGCCATAGCCACAG	0.562			NA											36	128					0	0	0.003755	0	0
SLC5A3	6526	broad.mit.edu	37	21	35469090	35469090	+	Silent	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr21:35469090T>A	uc002yto.2	+	2	2105	c.1593T>A	c.(1591-1593)CTT>CTA	p.L531L	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	531	Helical; (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						TTGTGAGCCTTCTCACACCAC	0.468			NA											26	32					0	0	0.005443	0	0
DIP2A	23181	broad.mit.edu	37	21	47970476	47970476	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr21:47970476G>T	uc002zjo.2	+	23	2841	c.2658G>T	c.(2656-2658)CAG>CAT	p.Q886H	DIP2A_uc011afy.1_Missense_Mutation_p.Q822H|DIP2A_uc011afz.1_Missense_Mutation_p.Q882H	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	886					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		GCATCCACCAGGTGGGCGTGT	0.582			NA											15	14					1.37285e-15	1.82482e-15	0.004007	1	0
SNRPD3	6634	broad.mit.edu	37	22	24964111	24964112	+	Missense_Mutation	DNP	GG	GG	CT			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr22:24964111_24964112GG>CT	uc003aam.1	+	3	726_727	c.286_287GG>CT	c.(286-288)GGC>CTC	p.G96L	SNRPD3_uc011aju.1_Missense_Mutation_p.G96L	NM_004175	NP_004166	P62318	SMD3_HUMAN	small nuclear ribonucleoprotein polypeptide D3	96	Arg/Lys-rich (basic).				histone mRNA metabolic process|ncRNA metabolic process|spliceosomal snRNP assembly|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|cytosol|nucleoplasm|U12-type spliceosomal complex|U7 snRNP	enzyme binding|histone pre-mRNA DCP binding			ovary(1)	1						CTCAGGGGCTGGCCGAGGAAAA	0.455			NA											26	38					0	0	0.004672	0	0
SEZ6L	23544	broad.mit.edu	37	22	26747058	26747058	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr22:26747058C>A	uc003acb.2	+	12	2604	c.2448C>A	c.(2446-2448)ACC>ACA	p.T816T	SEZ6L_uc003acc.2_Silent_p.T816T|SEZ6L_uc011akc.1_Silent_p.T816T|SEZ6L_uc003acd.2_Intron|SEZ6L_uc011akd.1_Silent_p.T816T|SEZ6L_uc003ace.2_Silent_p.T816T|SEZ6L_uc003acf.1_Silent_p.T589T|SEZ6L_uc010gvc.1_Silent_p.T589T|SEZ6L_uc011ake.1_RNA	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	816	Sushi 4.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						ATCACTCGACCCGCTTAATTT	0.542			NA											28	48					7.26314e-15	9.42167e-15	0.007291	1	0
INPP5J	27124	broad.mit.edu	37	22	31523954	31523954	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr22:31523954G>T	uc003aju.3	+	7	1897	c.1805G>T	c.(1804-1806)GGG>GTG	p.G602V	INPP5J_uc003ajv.3_Missense_Mutation_p.G235V|INPP5J_uc003ajs.3_Missense_Mutation_p.G235V|INPP5J_uc011alk.1_Missense_Mutation_p.G535V|INPP5J_uc010gwg.2_Missense_Mutation_p.G167V|INPP5J_uc003ajw.2_Missense_Mutation_p.G38V|INPP5J_uc003ajt.3_Missense_Mutation_p.G234V|INPP5J_uc003ajx.2_5'UTR|INPP5J_uc003ajy.2_5'UTR|INPP5J_uc003ajz.2_5'UTR	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	602	Catalytic (Potential).					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						TTCTGGTTCGGGGACCTGAAC	0.587			NA											12	28					4.3838e-07	4.88265e-07	0.001855	1	0
APOBEC3G	60489	broad.mit.edu	37	22	39479766	39479766	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr22:39479766C>A	uc003awx.2	+	5	954	c.612C>A	c.(610-612)TTC>TTA	p.F204L	APOBEC3G_uc003awy.2_Missense_Mutation_p.F137L	NM_021822	NP_068594	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	204					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2	Melanoma(58;0.04)					CATTCACTTTCAACTTTAACA	0.547			NA											31	41					4.31634e-10	5.16362e-10	0.012213	1	0
KIAA1644	85352	broad.mit.edu	37	22	44681338	44681338	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr22:44681338G>T	uc003bet.2	-	4	702	c.569C>A	c.(568-570)CCG>CAG	p.P190Q		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	190	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				GGTCATCAGCGGTGGGCTGTG	0.617			NA											24	70					3.73988e-18	5.18447e-18	0.00632	1	0
GTSE1	51512	broad.mit.edu	37	22	46712020	46712020	+	Silent	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr22:46712020G>T	uc011aqy.1	+	7	1355	c.1143G>T	c.(1141-1143)CTG>CTT	p.L381L	GTSE1_uc011aqz.1_Silent_p.L228L|GTSE1_uc003bhl.1_Silent_p.L6L|GTSE1_uc003bhm.1_Silent_p.L6L	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	362					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		CCGCCATGCTGCGGCCAGCTC	0.592	GBM(153;542 1915 12487 29016 50495)		NA											26	37					5.71845e-15	7.47797e-15	0.005524	1	0
MTMR14	64419	broad.mit.edu	37	3	9730437	9730437	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:9730437G>A	uc003brz.2	+	15	1417	c.1293G>A	c.(1291-1293)CTG>CTA	p.L431L	MTMR14_uc003bsa.2_Silent_p.L431L|MTMR14_uc003bsb.2_Silent_p.L431L|MTMR14_uc011ath.1_RNA|MTMR14_uc010hcl.2_Silent_p.L185L|MTMR14_uc003bsc.2_RNA	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	jumpy isoform 2	431						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(99;0.227)					TCTGCATGCTGAGTGAGTCCT	0.498			NA											5	68					0	0	0.000602	0	0
WNT7A	7476	broad.mit.edu	37	3	13860915	13860915	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:13860915C>T	uc003bye.1	-	4	881	c.576G>A	c.(574-576)CTG>CTA	p.L192L		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	192					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						TGTTCTCCTCCAGGATCTGCA	0.657			NA											19	56					0	0	0.008871	0	0
GALNTL2	117248	broad.mit.edu	37	3	16237266	16237266	+	Splice_Site	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:16237266G>A	uc003car.3	+	2	1015	c.540_splice	c.e2-1	p.L180_splice	GALNTL2_uc003caq.3_Splice_Site	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide							Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CTTCCCTGCAGGTGTCTGCAG	0.597			NA											10	33					0	0	0.008291	0	0
DCLK3	85443	broad.mit.edu	37	3	36779060	36779060	+	Missense_Mutation	SNP	T	T	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:36779060T>C	uc003cgi.2	-	2	1582	c.1091A>G	c.(1090-1092)GAT>GGT	p.D364G		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	364	Protein kinase.|ATP (By similarity).					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						AAAGTTCCCATCCCCAATGAC	0.577			NA											19	56					0	0	0.010504	0	0
PTPRG	5793	broad.mit.edu	37	3	62063885	62063885	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:62063885G>A	uc003dlb.2	+	5	1287	c.568G>A	c.(568-570)GCA>ACA	p.A190T	PTPRG_uc003dlc.2_Missense_Mutation_p.A190T	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	190	Extracellular (Potential).|Alpha-carbonic anhydrase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		CTTTCAAACCGCAATTTCTGA	0.274			NA											17	37					0	0	0.007413	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806880	97806880	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:97806880C>G	uc011bgs.1	+	1	864	c.864C>G	c.(862-864)AAC>AAG	p.N288K		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCCTGCTAAACCCATTTATTT	0.358			NA											13	35					0	0	0.001855	0	0
BOC	91653	broad.mit.edu	37	3	112993230	112993230	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:112993230C>A	uc003dzx.2	+	9	1864	c.1243C>A	c.(1243-1245)CCA>ACA	p.P415T	BOC_uc003dzy.2_Missense_Mutation_p.P415T|BOC_uc003dzz.2_Missense_Mutation_p.P415T|BOC_uc003eab.2_Missense_Mutation_p.P116T	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	415	Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			AGGCATAACCCCAAGGCTATG	0.552			NA											22	62					5.35356e-11	6.50075e-11	0.00278	1	0
IQCB1	9657	broad.mit.edu	37	3	121547406	121547406	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:121547406G>A	uc010hre.1	-	4	389	c.174C>T	c.(172-174)CTC>CTT	p.L58L	IQCB1_uc003eek.2_Silent_p.L58L|IQCB1_uc010hrf.1_RNA	NM_001023570	NP_001018864	Q15051	IQCB1_HUMAN	IQ motif containing B1 isoform a	58					cilium assembly|maintenance of organ identity|photoreceptor cell maintenance	centrosome|photoreceptor connecting cilium	calmodulin binding				0				GBM - Glioblastoma multiforme(114;0.0983)		AATATTGAATGAGATCATAAC	0.328			NA											22	39					0	0	0.012319	0	0
COL6A6	131873	broad.mit.edu	37	3	130284398	130284398	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:130284398C>A	uc010htl.2	+	3	1253	c.1222C>A	c.(1222-1224)CGG>AGG	p.R408R		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	408	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen		p.R408W(1)		ovary(6)|central_nervous_system(1)|pancreas(1)	8						GAAGAAGCTGCGGAACCAAAT	0.463			NA											8	13					5.18039e-06	5.71081e-06	0.00308	1	0
ATR	545	broad.mit.edu	37	3	142272808	142272808	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:142272808T>A	uc003eux.3	-	11	2513	c.2391A>T	c.(2389-2391)GAA>GAT	p.E797D		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	797					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CTGTTTCATCTTCTCTAAAAT	0.308			NA						Other_conserved_DNA_damage_response_genes					9	27					0	0	0.004482	0	0
ZIC4	84107	broad.mit.edu	37	3	147108741	147108741	+	Silent	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:147108741C>G	uc003ewd.1	-	4	1254	c.981G>C	c.(979-981)GCG>GCC	p.A327A	ZIC4_uc003ewc.1_Silent_p.A257A|ZIC4_uc011bno.1_Silent_p.A377A	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	327						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						CGGCGGTACGCGCCGCCACCG	0.701			NA											10	14					0	0	0.010729	0	0
GOLIM4	27333	broad.mit.edu	37	3	167813020	167813020	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:167813020C>A	uc003ffe.2	-	1	398	c.54G>T	c.(52-54)CTG>CTT	p.L18L	GOLIM4_uc011bpe.1_Silent_p.L18L|GOLIM4_uc011bpf.1_Silent_p.L18L|GOLIM4_uc011bpg.1_Silent_p.L18L	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	18	Helical; Signal-anchor for type II membrane protein; (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						CGGTCAGCAGCAGCAGCGTCT	0.647			NA											11	19					2.27111e-07	2.56493e-07	0.013537	1	0
CCDC39	339829	broad.mit.edu	37	3	180372601	180372601	+	Nonsense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:180372601A>T	uc010hxe.2	-	7	994	c.879T>A	c.(877-879)TGT>TGA	p.C293*	CCDC39_uc003fkn.2_RNA	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	293					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			ATGCCGTTCTACATTTTAAAA	0.358			NA											13	20					0	0	0.00245	0	0
GABRA2	2555	broad.mit.edu	37	4	46252494	46252494	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr4:46252494G>A	uc003gxc.3	-	9	1860	c.1187C>T	c.(1186-1188)CCC>CTC	p.P396L	GABRA2_uc010igc.2_Missense_Mutation_p.P396L|GABRA2_uc011bzc.1_Missense_Mutation_p.P401L	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	396	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CTTCTTGTTGGGTTCTGGCGT	0.428			NA											62	178					0	0	0.01441	0	0
SCFD2	152579	broad.mit.edu	37	4	54231754	54231754	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr4:54231754G>C	uc003gzu.2	-	1	489	c.355C>G	c.(355-357)CCA>GCA	p.P119A	SCFD2_uc010igm.2_Missense_Mutation_p.P119A	NM_152540	NP_689753	Q8WU76	SCFD2_HUMAN	sec1 family domain containing 2	119					protein transport|vesicle docking involved in exocytosis					ovary(2)|pancreas(1)	3			GBM - Glioblastoma multiforme(3;1.07e-26)|LUSC - Lung squamous cell carcinoma(32;0.0134)			GCCGCCGCTGGGACATGATTA	0.597			NA											21	26					0	0	0.012319	0	0
IL2	3558	broad.mit.edu	37	4	123377319	123377319	+	Nonsense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr4:123377319T>A	uc003ier.2	-	2	242	c.187A>T	c.(187-189)AAG>TAG	p.K63*		NM_000586	NP_000577	P60568	IL2_HUMAN	interleukin 2 precursor	63					anti-apoptosis|cell adhesion|cell-cell signaling|immune response|natural killer cell activation|negative regulation of B cell apoptosis|positive regulation of activated T cell proliferation|positive regulation of B cell proliferation|positive regulation of cell growth|positive regulation of interleukin-17 production|positive regulation of tyrosine phosphorylation of Stat5 protein|T cell differentiation	extracellular space	cytokine activity|growth factor activity|interleukin-2 receptor binding|kinase activator activity			skin(1)	1				LUSC - Lung squamous cell carcinoma(721;0.185)		ATGTAAAACTTAAATGTGAGC	0.284			NA	T	TNFRSF17	intestinal T-cell lymphoma								15	41					0	0	0.003163	0	0
PCDH18	54510	broad.mit.edu	37	4	138442835	138442835	+	Missense_Mutation	SNP	G	G	T	rs139751813		TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr4:138442835G>T	uc003ihe.3	-	4	3143	c.2756C>A	c.(2755-2757)ACG>AAG	p.T919K	PCDH18_uc003ihf.3_Missense_Mutation_p.T911K|PCDH18_uc011cgz.1_Missense_Mutation_p.T130K|PCDH18_uc003ihg.3_Missense_Mutation_p.T698K|PCDH18_uc011cha.1_Missense_Mutation_p.T99K	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	919	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GCACTCCTCCGTGCAGAGTCT	0.433			NA											67	71					3.00472e-47	4.62155e-47	0.01441	1	0
RBM46	166863	broad.mit.edu	37	4	155720682	155720682	+	Silent	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr4:155720682G>A	uc003ioo.2	+	4	1541	c.1368G>A	c.(1366-1368)AAG>AAA	p.K456K	RBM46_uc011cim.1_Silent_p.K456K|RBM46_uc003iop.1_Silent_p.K456K	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	456							nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				AAGATGCAAAGGAACTGGCAG	0.323			NA											3	18					0	0	0.009096	0	0
NAF1	92345	broad.mit.edu	37	4	164087830	164087830	+	Missense_Mutation	SNP	T	T	A	rs113104155	by1000genomes	TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr4:164087830T>A	uc003iqj.2	-	1	244	c.50A>T	c.(49-51)AAT>ATT	p.N17I	NAF1_uc010iqw.1_Missense_Mutation_p.N17I|NAF1_uc003iqk.2_RNA	NM_138386	NP_612395	Q96HR8	NAF1_HUMAN	nuclear assembly factor 1 homolog isoform a	17					rRNA processing|snRNA pseudouridine synthesis	cytoplasm|nucleus|small nucleolar ribonucleoprotein complex	protein binding|snoRNA binding			ovary(2)	2	all_hematologic(180;0.166)	Prostate(90;0.109)				GTCGGTGCCATTGAATTTCAG	0.657			NA											17	19					0	0	0.00499	0	0
NPY1R	4886	broad.mit.edu	37	4	164247218	164247218	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr4:164247218C>A	uc003iqm.1	-	2	755	c.489G>T	c.(487-489)TGG>TGT	p.W163C	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	163	Helical; Name=4; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CAGCAAGGACCCAAATCACAG	0.438			NA											57	44					1.59911e-31	2.39126e-31	0.01441	1	0
CASP3	836	broad.mit.edu	37	4	185553059	185553059	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr4:185553059C>A	uc003iwh.2	-	6	606	c.343G>T	c.(343-345)GTT>TTT	p.V115F	CASP3_uc003iwg.2_Missense_Mutation_p.V115F|CASP3_uc003iwi.2_Missense_Mutation_p.V115F	NM_004346	NP_004337	P42574	CASP3_HUMAN	caspase 3 preproprotein	115					activation of caspase activity by cytochrome c|DNA fragmentation involved in apoptotic nuclear change|negative regulation of apoptosis|nerve growth factor receptor signaling pathway|nuclear fragmentation involved in apoptotic nuclear change|proteolysis|response to tumor necrosis factor	cytosol|mitochondrion|nucleoplasm|plasma membrane	cysteine-type endopeptidase activity|protein binding			kidney(1)	1		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.057)|all_hematologic(60;0.0592)		all cancers(43;2.05e-27)|Epithelial(43;4.27e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.04e-11)|Colorectal(24;2e-05)|STAD - Stomach adenocarcinoma(60;2.35e-05)|GBM - Glioblastoma multiforme(59;4.94e-05)|COAD - Colon adenocarcinoma(29;0.00017)|BRCA - Breast invasive adenocarcinoma(30;0.000218)|LUSC - Lung squamous cell carcinoma(40;0.00904)|READ - Rectum adenocarcinoma(43;0.161)	Melatonin(DB01065)|Minocycline(DB01017)|Simvastatin(DB00641)	AGCACACAAACAAAACTGCTC	0.338			NA											38	73					6.48837e-15	8.45057e-15	0.010771	1	0
SLC12A7	10723	broad.mit.edu	37	5	1064054	1064054	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:1064054C>A	uc003jbu.2	-	20	2710	c.2644G>T	c.(2644-2646)GCC>TCC	p.A882S		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	882	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	TCCACCTGGGCCACGGTGAAG	0.627			NA											23	40					4.16121e-05	4.51031e-05	0.00278	1	0
PRDM9	56979	broad.mit.edu	37	5	23527869	23527869	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:23527869G>T	uc003jgo.2	+	11	2854	c.2672G>T	c.(2671-2673)AGG>ATG	p.R891M		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	891					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TACGTCTGCAGGGAGGATGAG	0.522			NA								HNSCC(3;0.000094)			17	47					7.05477e-17	9.45514e-17	0.00499	1	0
IL7R	3575	broad.mit.edu	37	5	35876359	35876359	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:35876359C>A	uc003jjs.2	+	8	1240	c.1151C>A	c.(1150-1152)TCT>TAT	p.S384Y	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	384	Cytoplasmic (Potential).			S -> P (in Ref. 7; AAH67537).	immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			ATTCTCTCCTCTTCCAGGTCC	0.542			NA											31	38					1.56442e-22	2.20658e-22	0.012213	1	0
LMBRD2	92255	broad.mit.edu	37	5	36122394	36122394	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:36122394T>A	uc003jkb.1	-	9	1523	c.1108A>T	c.(1108-1110)AAT>TAT	p.N370Y		NM_001007527	NP_001007528	Q68DH5	LMBD2_HUMAN	LMBR1 domain containing 2	370	Cytoplasmic (Potential).					integral to membrane					0	all_lung(31;0.000146)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AATGTAGGATTATAAAAATAT	0.294			NA											17	27					0	0	0.007413	0	0
PAIP1	10605	broad.mit.edu	37	5	43537010	43537010	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:43537010T>A	uc003job.2	-	6	1130	c.883A>T	c.(883-885)ATT>TTT	p.I295F	PAIP1_uc003joa.2_Missense_Mutation_p.I216F|PAIP1_uc010ivp.2_Missense_Mutation_p.I216F|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_Missense_Mutation_p.I183F	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	295	MIF4G.				mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					ACCTGAAGAATATCTGCTCTT	0.338			NA											6	65					0	0	0.001984	0	0
ANKRD55	79722	broad.mit.edu	37	5	55472081	55472081	+	Silent	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:55472081A>G	uc003jqu.2	-	4	362	c.210T>C	c.(208-210)TCT>TCC	p.S70S		NM_024669	NP_078945	Q3KP44	ANR55_HUMAN	ankyrin repeat domain 55 isoform 1	69	ANK 2.									skin(1)	1		Lung NSC(810;8.69e-05)|Prostate(74;0.00634)|Breast(144;0.0334)|Ovarian(174;0.223)				CTTGACGTCCAGAAACCGCAT	0.493			NA											42	108					0	0	0.010771	0	0
PIK3R1	5295	broad.mit.edu	37	5	67575530	67575530	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:67575530C>T	uc003jva.2	+	5	1163	c.603C>T	c.(601-603)GCC>GCT	p.A201A	PIK3R1_uc003jvb.2_Silent_p.A201A	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	201	Rho-GAP.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	TTCCAGCAGCCGTTTACAGTG	0.433			NA	Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			43	58					0	0	0.01441	0	0
TSLP	85480	broad.mit.edu	37	5	110407631	110407631	+	Missense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:110407631A>T	uc003kpb.2	+	1	242	c.43A>T	c.(43-45)AGG>TGG	p.R15W	TSLP_uc003kpa.2_RNA|TSLP_uc010jbt.1_5'Flank	NM_033035	NP_149024	Q969D9	TSLP_HUMAN	thymic stromal lymphopoietin isoform 1	15						extracellular space	cytokine activity				0		all_cancers(142;2.72e-05)|all_epithelial(76;4.39e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0417)|Ovarian(225;0.0443)|Colorectal(57;0.0464)|all_lung(232;0.0507)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.24e-08)|Epithelial(69;1.54e-07)|all cancers(49;1.73e-05)|COAD - Colon adenocarcinoma(37;0.109)		AGTTTCTTTCAGGAAAATCTT	0.408			NA											51	67					0	0	0.01441	0	0
FBN2	2201	broad.mit.edu	37	5	127782228	127782228	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:127782228C>G	uc003kuu.2	-	7	1337	c.898G>C	c.(898-900)GAA>CAA	p.E300Q	FBN2_uc003kuv.2_Missense_Mutation_p.E267Q|FBN2_uc003kuw.3_Missense_Mutation_p.E300Q|FBN2_uc003kux.1_Missense_Mutation_p.E300Q	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	300	EGF-like 4; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CATCTGCATTCAAAAGAGCCC	0.428			NA											38	67					0	0	0.005524	0	0
RAPGEF6	51735	broad.mit.edu	37	5	131080266	131080266	+	Missense_Mutation	SNP	T	T	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:131080266T>C	uc003kvp.1	-	2	352	c.210A>G	c.(208-210)ATA>ATG	p.I70M	FNIP1_uc003kvs.1_Missense_Mutation_p.I70M|FNIP1_uc003kvt.1_Missense_Mutation_p.I70M|FNIP1_uc010jdm.1_Missense_Mutation_p.I70M|FNIP1_uc003kvu.2_Missense_Mutation_p.I70M	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		CCGATACTGATATGTCCTCAT	0.368	Melanoma(168;435 1955 13113 13877 23213)		NA											38	51					0	0	0.011902	0	0
C5orf20	140947	broad.mit.edu	37	5	134782574	134782574	+	Silent	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:134782574G>T	uc003lav.2	-	1	465	c.225C>A	c.(223-225)ACC>ACA	p.T75T		NM_130848	NP_570900	Q8TF63	DCNP1_HUMAN	dendritic cell nuclear protein 1	75						nucleus					0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CAGCTGGCAAGGTTTTGTTCC	0.602			NA											13	43					1.05317e-09	1.23251e-09	0.00245	1	0
PCDHA7	56141	broad.mit.edu	37	5	140215502	140215502	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:140215502G>T	uc003lhq.2	+	1	1534	c.1534G>T	c.(1534-1536)GCG>TCG	p.A512S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.A512S	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	512	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCAGTGCACGCGGAGAGCGG	0.701	NSCLC(160;258 2013 5070 22440 28951)		NA											76	96					3.83088e-25	5.4751e-25	0.01441	1	0
PCDHB3	56132	broad.mit.edu	37	5	140480970	140480970	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:140480970T>A	uc003lio.2	+	1	737	c.737T>A	c.(736-738)CTC>CAC	p.L246H	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	246	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCACAGCCGCTCTATGAGGTT	0.493			NA											53	65					0	0	0.01441	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481614	140481614	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:140481614C>T	uc003lio.2	+	1	1381	c.1381C>T	c.(1381-1383)CGC>TGC	p.R461C	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	461	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGTTCGTCCGCGAGAACAA	0.602			NA											113	111					0	0	0.01441	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580431	140580431	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:140580431G>C	uc003liy.2	+	1	1084	c.1084G>C	c.(1084-1086)GAG>CAG	p.E362Q	PCDHB11_uc011daj.1_5'UTR	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	362	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAATACGCCAGAGACCGTGGT	0.408			NA											38	79					0	0	0.004878	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720243	140720243	+	Missense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:140720243A>T	uc003ljk.1	+	1	1890	c.1705A>T	c.(1705-1707)ACA>TCA	p.T569S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.T569S	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	569	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCCTTCCCCACAGACGGTTC	0.637			NA											100	153					0	0	0.01441	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140778645	140778645	+	Silent	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:140778645G>T	uc003lkf.1	+	1	951	c.951G>T	c.(949-951)GGG>GGT	p.G317G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.G317G	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	317	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGTAGAAGGGAGGGATGGTG	0.383			NA											69	98					2.69673e-31	4.01403e-31	0.01441	1	0
PCDHGC5	56097	broad.mit.edu	37	5	140870351	140870351	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:140870351G>T	uc003lla.1	+	1	1544	c.1544G>T	c.(1543-1545)CGG>CTG	p.R515L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Missense_Mutation_p.R515L	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	515	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGGATGGACGGATCTTTGCC	0.547			NA											36	99					5.71845e-15	7.47797e-15	0.005524	1	0
KCTD16	57528	broad.mit.edu	37	5	143587020	143587020	+	Missense_Mutation	SNP	T	T	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:143587020T>G	uc003lnm.1	+	3	1372	c.743T>G	c.(742-744)GTG>GGG	p.V248G	KCTD16_uc003lnn.1_Missense_Mutation_p.V248G	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	248						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			TTCCACATGGTGGCCTGTAAC	0.428			NA											71	77					0	0	0.01441	0	0
SLIT3	6586	broad.mit.edu	37	5	168671714	168671714	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:168671714C>A	uc003mab.2	-	3	756	c.336G>T	c.(334-336)GAG>GAT	p.E112D	SLIT3_uc010jjg.2_Missense_Mutation_p.E112D|SLIT3_uc010jji.2_Missense_Mutation_p.E112D	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	112	LRR 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTTACAGTCGCTCTAGCTGCT	0.393	Ovarian(29;311 847 10864 17279 24903)		NA											21	28					0.00152264	0.001602	0.010504	1	0
SLC34A1	6569	broad.mit.edu	37	5	176824901	176824901	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:176824901C>T	uc003mgk.3	+	13	1635	c.1534C>T	c.(1534-1536)CGC>TGC	p.R512C		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	512	Cytoplasmic (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCCAAGTACCGCTGGTTTGC	0.607			NA											62	62					0	0	0.01441	0	0
FAM153A	285596	broad.mit.edu	37	5	177158588	177158588	+	Missense_Mutation	SNP	G	G	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:177158588G>A	uc010jkp.1	-	17	1034	c.613C>T	c.(613-615)CCA>TCA	p.P205S	FAM153A_uc011dgd.1_Intron|FAM153A_uc003mib.1_RNA|FAM153A_uc003mic.2_Missense_Mutation_p.P205S	NM_173663	NP_775934	Q9UHL3	F153A_HUMAN	hypothetical protein LOC285596	205										skin(1)	1	all_cancers(89;0.00033)|Renal(175;0.000269)|Lung NSC(126;0.00161)|all_lung(126;0.00286)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGCGTGGCTGGGTCCACCTGC	0.463			NA											31	17					0	0	0.004289	0	0
MSH5	4439	broad.mit.edu	37	6	31727709	31727709	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr6:31727709C>A	uc003nwv.1	+	18	1721	c.1642C>A	c.(1642-1644)CGT>AGT	p.R548S	MSH5_uc003nwt.1_Missense_Mutation_p.R565S|MSH5_uc003nwu.1_Missense_Mutation_p.R548S|MSH5_uc003nww.1_Missense_Mutation_p.R548S|MSH5_uc003nwx.1_Missense_Mutation_p.R565S|MSH5_uc011dof.1_Missense_Mutation_p.R247S|MSH5_uc003nwy.1_Missense_Mutation_p.R222S|MSH5_uc003nwz.3_RNA	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	548					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						CTCAAGGCCGCGTTACTCCCC	0.572			NA						Direct_reversal_of_damage|MMR					34	59					4.31634e-10	5.16362e-10	0.012213	1	0
C6orf222	389384	broad.mit.edu	37	6	36298043	36298043	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr6:36298043G>C	uc003oly.2	-	2	603	c.425C>G	c.(424-426)CCA>CGA	p.P142R		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	142										skin(2)|ovary(1)|breast(1)	4						CCTGAGGGCTGGCTCCCCTGC	0.627			NA											40	62					0	0	0.006999	0	0
PIM1	5292	broad.mit.edu	37	6	37140918	37140918	+	Nonsense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr6:37140918C>T	uc003onk.2	+	5	1184	c.754C>T	c.(754-756)CAG>TAG	p.Q252*	PIM1_uc011dtw.1_Silent_p.A120A	NM_002648	NP_002639	P11309	PIM1_HUMAN	non-specific serine/threonine protein kinase	343	Protein kinase.				cell cycle|cell proliferation|multicellular organismal development|negative regulation of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|protein autophosphorylation	cytoplasm|nucleus|plasma membrane	ATP binding|manganese ion binding|protein binding|protein binding|protein serine/threonine kinase activity|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(102;0.241)		Adenosine monophosphate(DB00131)	CATCAGGGGCCAGGTTTTCTT	0.527			NA	T	BCL6	NHL								4	88					0	0	0.000602	0	0
C6orf138	442213	broad.mit.edu	37	6	47846599	47846599	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr6:47846599C>G	uc011dwm.1	-	3	2015	c.1930G>C	c.(1930-1932)GTT>CTT	p.V644L	C6orf138_uc011dwn.1_Missense_Mutation_p.V408L	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	661	Helical; (Potential).					integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						GCAATCAGAACAGGCACTGTG	0.483			NA											45	79					0	0	0.011902	0	0
TFAP2D	83741	broad.mit.edu	37	6	50683151	50683151	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr6:50683151C>T	uc003paf.2	+	2	874	c.362C>T	c.(361-363)GCG>GTG	p.A121V	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	121							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					AATGCGCGGGCGCTCAAGTCG	0.607			NA											59	86					0	0	0.01441	0	0
HTR1E	3354	broad.mit.edu	37	6	87725995	87725995	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr6:87725995G>T	uc003pli.2	+	2	1646	c.943G>T	c.(943-945)GGT>TGT	p.G315C		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	315	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	GTTGATTGTGGGTCTGAGCAT	0.498			NA											71	55					7.46257e-40	1.13699e-39	0.01441	1	0
SYNE1	23345	broad.mit.edu	37	6	152473247	152473247	+	Silent	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr6:152473247C>G	uc010kiw.2	-	134	24761	c.24159G>C	c.(24157-24159)CTG>CTC	p.L8053L	SYNE1_uc010kiv.2_Silent_p.L2577L|SYNE1_uc003qos.3_Silent_p.L2577L|SYNE1_uc003qot.3_Silent_p.L7982L|SYNE1_uc003qou.3_Silent_p.L8053L|SYNE1_uc003qop.3_Silent_p.L215L|SYNE1_uc011eez.1_Silent_p.L255L|SYNE1_uc003qoq.3_Silent_p.L255L|SYNE1_uc003qor.3_Silent_p.L953L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8053	Spectrin 29.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCAGCTGCGTCAGGCACTCGT	0.542			NA								HNSCC(10;0.0054)			24	43					0	0	0.004656	0	0
SDK1	221935	broad.mit.edu	37	7	3991439	3991439	+	Missense_Mutation	SNP	G	G	A	rs138596298	byFrequency	TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:3991439G>A	uc003smx.2	+	7	1176	c.1037G>A	c.(1036-1038)CGC>CAC	p.R346H		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	346	Ig-like C2-type 3.			R -> H (in Ref. 1; AAP75619 and 2; BAB71066).	cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		TTTGGAAGACGCCTCACCATC	0.617			NA											9	81					0	0	0.004482	0	0
PMS2	5395	broad.mit.edu	37	7	6029588	6029588	+	Splice_Site	SNP	T	T	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:6029588T>C	uc003spl.2	-	10	1076	c.989_splice	c.e10-1	p.E330_splice	PMS2_uc003spj.2_Splice_Site_p.E224_splice|PMS2_uc003spk.2_Splice_Site_p.E195_splice|PMS2_uc011jwl.1_Splice_Site_p.E195_splice|PMS2_uc010ktg.2_Splice_Site_p.E19_splice|PMS2_uc010kte.2_Intron|PMS2_uc010ktf.1_Splice_Site_p.E330_splice	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform						mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		CAACGCATTCTAAGGCAAAAA	0.214			NA	Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				18	17					0	0	0.00499	0	0
BMPER	168667	broad.mit.edu	37	7	34085917	34085918	+	Splice_Site	DNP	GG	GG	TT			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:34085917_34085918GG>TT	uc011kap.1	+	7	691	c.577_splice	c.e7-1	p.G193_splice		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor						blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						TCTTTTCTTAGGGAGGCAGGAC	0.436			NA											28	112					0	0	0.004672	0	0
UPP1	7378	broad.mit.edu	37	7	48141551	48141551	+	Missense_Mutation	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:48141551A>G	uc003toj.2	+	6	822	c.293A>G	c.(292-294)TAT>TGT	p.Y98C	UPP1_uc003tok.2_Missense_Mutation_p.Y98C|UPP1_uc003tol.2_Missense_Mutation_p.Y98C|UPP1_uc011kcg.1_Missense_Mutation_p.Y98C|UPP1_uc011kch.1_Intron|UPP1_uc003ton.2_Intron|UPP1_uc003too.2_Intron	NM_181597	NP_853628	Q16831	UPP1_HUMAN	uridine phosphorylase 1	98					nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage	cytosol	uridine phosphorylase activity				0						TATGCCATGTATAAAGTAGGA	0.562			NA											39	44					0	0	0.010771	0	0
ABCA13	154664	broad.mit.edu	37	7	48626780	48626780	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:48626780C>G	uc003toq.2	+	57	14561	c.14536C>G	c.(14536-14538)CTC>GTC	p.L4846V	ABCA13_uc010kys.1_Missense_Mutation_p.L1921V|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.L576V	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4846	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GCGCTTACACCTCGAAGCCCA	0.572			NA											12	11					0	0	0.010729	0	0
ELN	2006	broad.mit.edu	37	7	73467602	73467602	+	Silent	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:73467602T>A	uc003tzw.2	+	18	1150	c.1059T>A	c.(1057-1059)GTT>GTA	p.V353V	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_RNA|ELN_uc011kfe.1_Silent_p.V322V|ELN_uc003tzn.2_Silent_p.V353V|ELN_uc003tzz.2_Silent_p.V317V|ELN_uc003tzo.2_Silent_p.V339V|ELN_uc003tzp.2_Silent_p.V309V|ELN_uc003tzq.2_Silent_p.V236V|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Silent_p.V353V|ELN_uc003tzt.2_Silent_p.V358V|ELN_uc003tzu.2_Silent_p.V358V|ELN_uc003tzv.2_Silent_p.V343V|ELN_uc003tzx.2_Silent_p.V343V|ELN_uc011kff.1_Silent_p.V353V|ELN_uc003tzy.2_Silent_p.V348V	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	353	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	GGATTCCAGTTGTCCCAGGTG	0.493			NA	T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						43	24					0	0	0.00874	0	0
CALCR	799	broad.mit.edu	37	7	93063564	93063564	+	Splice_Site	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:93063564C>A	uc003umv.1	-	14	1554	c.1293_splice	c.e14+1	p.E431_splice	CALCR_uc011kia.1_Splice_Site_p.E211_splice|CALCR_uc003ums.1_Splice_Site|CALCR_uc003umt.1_Splice_Site|CALCR_uc003umu.1_Splice_Site_p.E397_splice|CALCR_uc003umw.2_Splice_Site_p.E397_splice	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor						activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	TGCATGCTTACCTCATTGTTG	0.358			NA											26	45					6.38683e-12	7.93441e-12	0.008361	1	0
MET	4233	broad.mit.edu	37	7	116397705	116397705	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:116397705C>G	uc003vij.2	+	8	2166	c.1979C>G	c.(1978-1980)ACA>AGA	p.T660R	MET_uc010lkh.2_Missense_Mutation_p.T660R|MET_uc011kne.1_Missense_Mutation_p.T632R|MET_uc011knf.1_Missense_Mutation_p.T660R|MET_uc011kng.1_Missense_Mutation_p.T660R|MET_uc011knh.1_Missense_Mutation_p.T660R|MET_uc011kni.1_Missense_Mutation_p.T660R|MET_uc011knj.1_Missense_Mutation_p.T230R	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	660	Extracellular (Potential).|IPT/TIG 2.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CCTGTAATAACAAGTATTTCG	0.333			NA	Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				25	42					0	0	0.003954	0	0
PRSS1	5644	broad.mit.edu	37	7	142458515	142458515	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:142458515C>T	uc003wak.2	+	2	167	c.150C>T	c.(148-150)GGC>GGT	p.G50G	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Missense_Mutation_p.L26F|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	50	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TCTGTGGTGGCTCCCTCATCA	0.562			NA							Hereditary_Pancreatitis				7	146					0	0	0.001984	0	0
TRPV5	56302	broad.mit.edu	37	7	142626165	142626165	+	Missense_Mutation	SNP	G	G	C			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:142626165G>C	uc003wby.1	-	5	802	c.538C>G	c.(538-540)CGG>GGG	p.R180G	TRPV5_uc003wbz.2_Missense_Mutation_p.R180G	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	180	ANK 4.|Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					ATGAGCAGCCGCACGATCTCC	0.612			NA											17	14					0	0	0.007413	0	0
TAS2R60	338398	broad.mit.edu	37	7	143140732	143140732	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:143140732G>T	uc011ktg.1	+	1	187	c.187G>T	c.(187-189)GGG>TGG	p.G63W	uc003wda.2_Intron	NM_177437	NP_803186	P59551	T2R60_HUMAN	taste receptor, type 2, member 60	63	Extracellular (Potential).				sensory perception of bitter taste	integral to membrane	G-protein coupled receptor activity			skin(6)	6	Melanoma(164;0.172)					GGTTAGCCTAGGGGCCTCTCG	0.498			NA											63	61					1.53122e-18	2.13183e-18	0.01441	1	0
GIMAP8	155038	broad.mit.edu	37	7	150174248	150174248	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:150174248G>T	uc003whj.2	+	5	1708	c.1378G>T	c.(1378-1380)GGG>TGG	p.G460W		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	460						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CTCTATCCTGGGGAGCCTCGT	0.592			NA											20	48					6.44725e-10	7.62807e-10	0.014323	1	0
ARHGEF10	9639	broad.mit.edu	37	8	1844550	1844550	+	Missense_Mutation	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:1844550A>G	uc003wpr.2	+	14	1670	c.1492A>G	c.(1492-1494)AGC>GGC	p.S498G	ARHGEF10_uc003wpq.1_Missense_Mutation_p.S523G|ARHGEF10_uc003wps.2_Missense_Mutation_p.S460G|ARHGEF10_uc003wpt.2_Missense_Mutation_p.S374G|ARHGEF10_uc003wpv.2_Missense_Mutation_p.S231G|ARHGEF10_uc010lre.2_Missense_Mutation_p.S178G	NM_014629	NP_055444	O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor 10	523	DH.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		GAACAATTTCAGCACAGCCGT	0.403			NA											41	57					0	0	0.006999	0	0
CSMD1	64478	broad.mit.edu	37	8	3263580	3263580	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:3263580C>A	uc011kwk.1	-	15	2628	c.2238G>T	c.(2236-2238)GTG>GTT	p.V746V	CSMD1_uc011kwj.1_Silent_p.V138V	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	746	Sushi 4.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGCTCCAGACCACGTTCCCGT	0.547			NA											13	28					6.53275e-17	8.792e-17	0.00245	1	0
RP1L1	94137	broad.mit.edu	37	8	10467346	10467346	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:10467346G>T	uc003wtc.2	-	4	4491	c.4262C>A	c.(4261-4263)TCC>TAC	p.S1421Y		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1421					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ATCTTCCTGGGAGCCTTTCCC	0.607			NA											166	362					1.13191e-60	1.75773e-60	0.01441	1	0
KCNU1	157855	broad.mit.edu	37	8	36698451	36698451	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:36698451C>A	uc010lvw.2	+	16	1720	c.1633C>A	c.(1633-1635)CTC>ATC	p.L545I	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	545	Segment S8.|Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		CCTTCCCAGGCTCTGCTTTCT	0.463			NA											10	27					1.33987e-11	1.65182e-11	0.008291	1	0
RNF5P1	286140	broad.mit.edu	37	8	38458368	38458368	+	Silent	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:38458368C>T	uc003xly.2	-	1	408	c.351G>A	c.(349-351)GGG>GGA	p.G117G		NR_003129				SubName: Full=Putative uncharacterized protein RNF5;												0						AGTGGAAGCCCCCGGTATCAC	0.567			NA											52	75					0	0	0.01441	0	0
ADAM2	2515	broad.mit.edu	37	8	39624758	39624758	+	Missense_Mutation	SNP	T	T	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:39624758T>A	uc003xnj.2	-	13	1300	c.1225A>T	c.(1225-1227)ATT>TTT	p.I409F	ADAM2_uc003xnk.2_Missense_Mutation_p.I390F|ADAM2_uc011lck.1_Missense_Mutation_p.I409F|ADAM2_uc003xnl.2_Missense_Mutation_p.I283F	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	409	Extracellular (Potential).|Disintegrin.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		GTTTCTCCAATAAGGGCACAA	0.378			NA											65	100					0	0	0.01441	0	0
MCM4	4173	broad.mit.edu	37	8	48883348	48883348	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:48883348G>T	uc003xqk.1	+	12	1807	c.1712G>T	c.(1711-1713)TGC>TTC	p.C571F	MCM4_uc003xql.1_Missense_Mutation_p.C571F|MCM4_uc011ldi.1_Missense_Mutation_p.C558F	NM_182746	NP_877423	P33991	MCM4_HUMAN	minichromosome maintenance complex component 4	571	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(2)|skin(2)	4		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				AACGGCATCTGCTGTATCGAT	0.498			NA											18	34					1.67942e-08	1.93043e-08	0.006122	1	0
CHD7	55636	broad.mit.edu	37	8	61774827	61774827	+	Nonsense_Mutation	SNP	A	A	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:61774827A>T	uc003xue.2	+	36	8380	c.7903A>T	c.(7903-7905)AAA>TAA	p.K2635*		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2635					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AAACCCTAATAAATTGGATAT	0.368			NA											11	14					0	0	0.010729	0	0
ZFHX4	79776	broad.mit.edu	37	8	77761847	77761847	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:77761847C>T	uc003yav.2	+	8	3997	c.3610C>T	c.(3610-3612)CCT>TCT	p.P1204S	ZFHX4_uc003yau.1_Missense_Mutation_p.P1249S|ZFHX4_uc003yaw.1_Missense_Mutation_p.P1204S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1204	C2H2-type 9.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CATCTGCTGTCCTCTCTGTCA	0.488			NA								HNSCC(33;0.089)			10	66					0	0	0.006214	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766851	77766851	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:77766851C>A	uc003yav.2	+	10	7946	c.7559C>A	c.(7558-7560)TCC>TAC	p.S2520Y	ZFHX4_uc003yau.1_Missense_Mutation_p.S2565Y|ZFHX4_uc003yaw.1_Missense_Mutation_p.S2520Y	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2520						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGGCCAGTTCCTCCCACACC	0.498			NA								HNSCC(33;0.089)			32	52					5.60225e-13	7.01367e-13	0.009535	1	0
ZFHX4	79776	broad.mit.edu	37	8	77767876	77767876	+	Missense_Mutation	SNP	C	C	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:77767876C>G	uc003yav.2	+	10	8971	c.8584C>G	c.(8584-8586)CCG>GCG	p.P2862A	ZFHX4_uc003yau.1_Missense_Mutation_p.P2907A|ZFHX4_uc003yaw.1_Missense_Mutation_p.P2862A	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2862						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CATAGCGGACCCGAGCTCCCC	0.502			NA								HNSCC(33;0.089)			21	28					0	0	0.012319	0	0
NFKBIL2	4796	broad.mit.edu	37	8	145661513	145661513	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:145661513C>T	uc011llg.1	-	17	2318	c.2303G>A	c.(2302-2304)CGG>CAG	p.R768Q	uc011llh.1_Intron	NM_013432	NP_038460	Q96HA7	TONSL_HUMAN	NF-kappa-B inhibitor-like protein 2	768					cytoplasmic sequestering of transcription factor|double-strand break repair via homologous recombination|replication fork processing	cytoplasm|nuclear replication fork	histone binding|transcription corepressor activity				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			GGCTGCCACCCGTTGTGCTGT	0.711			NA											4	9					0	0	0.001168	0	0
ZNF16	7564	broad.mit.edu	37	8	146156251	146156251	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:146156251C>T	uc003zet.2	-	4	2109	c.1922G>A	c.(1921-1923)CGT>CAT	p.R641H	ZNF16_uc003zeu.2_Missense_Mutation_p.R641H	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	641	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		GAGGACCGAACGCTGACTGAA	0.537			NA											49	69					0	0	0.01441	0	0
PTPRD	5789	broad.mit.edu	37	9	8340442	8340442	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr9:8340442C>A	uc003zkk.2	-	41	5865	c.5154G>T	c.(5152-5154)CAG>CAT	p.Q1718H	PTPRD_uc003zkp.2_Missense_Mutation_p.Q1312H|PTPRD_uc003zkq.2_Missense_Mutation_p.Q1311H|PTPRD_uc003zkr.2_Missense_Mutation_p.Q1302H|PTPRD_uc003zks.2_Missense_Mutation_p.Q1311H|PTPRD_uc003zkl.2_Missense_Mutation_p.Q1709H|PTPRD_uc003zkm.2_Missense_Mutation_p.Q1705H|PTPRD_uc003zkn.2_Missense_Mutation_p.Q1307H|PTPRD_uc003zko.2_Missense_Mutation_p.Q1308H	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1718	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CCAAGGGCCCCTGGGTAGCGA	0.458			NA								TSP Lung(15;0.13)			25	22					0.00047179	0.000504596	0.00333	1	0
PTPRD	5789	broad.mit.edu	37	9	8484231	8484231	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr9:8484231C>A	uc003zkk.2	-	29	4012	c.3301G>T	c.(3301-3303)GCA>TCA	p.A1101S	PTPRD_uc003zkp.2_Missense_Mutation_p.A690S|PTPRD_uc003zkq.2_Missense_Mutation_p.A690S|PTPRD_uc003zkr.2_Missense_Mutation_p.A685S|PTPRD_uc003zks.2_Missense_Mutation_p.A680S|PTPRD_uc003zkl.2_Missense_Mutation_p.A1092S|PTPRD_uc003zkm.2_Missense_Mutation_p.A1088S|PTPRD_uc003zkn.2_Missense_Mutation_p.A690S|PTPRD_uc003zko.2_Missense_Mutation_p.A687S	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1101	Fibronectin type-III 8.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GCAGTCTTTGCCGTGACCCTG	0.473			NA								TSP Lung(15;0.13)			43	38					6.5261e-18	8.96992e-18	0.00874	1	0
PRKACG	5568	broad.mit.edu	37	9	71628335	71628335	+	Missense_Mutation	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr9:71628335A>G	uc004agy.2	-	1	705	c.674T>C	c.(673-675)CTA>CCA	p.L225P		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	225	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						GAGCACCCCTAGGGCCCACCA	0.612	Esophageal Squamous(110;2236 2623 32146)		NA											25	23					0	0	0.00333	0	0
TRPM3	80036	broad.mit.edu	37	9	73151003	73151003	+	Missense_Mutation	SNP	G	G	A	rs41287375	by1000genomes	TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr9:73151003G>A	uc004aid.2	-	25	5234	c.4990C>T	c.(4990-4992)CGG>TGG	p.R1664W	TRPM3_uc004ahu.2_Missense_Mutation_p.R1506W|TRPM3_uc004ahv.2_Missense_Mutation_p.R1466W|TRPM3_uc004ahw.2_Missense_Mutation_p.R1536W|TRPM3_uc004ahx.2_Missense_Mutation_p.R1523W|TRPM3_uc004ahy.2_Missense_Mutation_p.R1526W|TRPM3_uc004ahz.2_Missense_Mutation_p.R1513W|TRPM3_uc004aia.2_Missense_Mutation_p.R1511W|TRPM3_uc004aib.2_Missense_Mutation_p.R1501W|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1689	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GCTGTGTTCCGCTGCCTGTCG	0.577			NA											129	74					0	0	0.01441	0	0
TRPM6	140803	broad.mit.edu	37	9	77436629	77436629	+	Silent	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr9:77436629C>A	uc004ajl.1	-	8	1204	c.966G>T	c.(964-966)GCG>GCT	p.A322A	TRPM6_uc004ajk.1_Silent_p.A317A|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Silent_p.A322A|TRPM6_uc010mpd.1_Silent_p.A322A|TRPM6_uc010mpe.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	322	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GGAGGTCAGCCGCCCTACCTG	0.542			NA											32	22					2.80507e-11	3.43196e-11	0.012213	1	0
GADD45G	10912	broad.mit.edu	37	9	92220638	92220638	+	Missense_Mutation	SNP	A	A	G			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr9:92220638A>G	uc004aqq.2	+	3	322	c.212A>G	c.(211-213)GAC>GGC	p.D71G	GADD45G_uc004aqr.2_Missense_Mutation_p.D53G	NM_006705	NP_006696	O95257	GA45G_HUMAN	growth arrest and DNA-damage-inducible, gamma	71					activation of MAPKKK activity|apoptosis|cell differentiation|DNA repair|multicellular organismal development		protein binding				0						GACGAGGGCGACATCGCGCTG	0.627	Colon(131;320 2336 18973 23919)		NA											18	21					0	0	0.008871	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138713787	138713787	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr9:138713787C>T	uc004cgr.3	-	11	2720	c.2720G>A	c.(2719-2721)CGC>CAC	p.R907H	CAMSAP1_uc004cgq.3_Missense_Mutation_p.R797H|CAMSAP1_uc010nbg.2_Missense_Mutation_p.R629H	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	907						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GAGCTTCAGGCGCTGCCTTGC	0.617			NA											60	97					0	0	0.01441	0	0
FAM46D	169966	broad.mit.edu	37	X	79699185	79699185	+	Missense_Mutation	SNP	C	C	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chrX:79699185C>T	uc004edl.1	+	5	1481	c.1147C>T	c.(1147-1149)CGT>TGT	p.R383C	FAM46D_uc004edm.1_Missense_Mutation_p.R383C	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	383										lung(2)	2						ACTGCACTTTCGTGGATCAAA	0.403			NA											15	6					0	0	0.007413	0	0
GPR112	139378	broad.mit.edu	37	X	135431752	135431752	+	Missense_Mutation	SNP	G	G	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chrX:135431752G>T	uc004ezu.1	+	6	6178	c.5887G>T	c.(5887-5889)GCT>TCT	p.A1963S	GPR112_uc010nsb.1_Missense_Mutation_p.A1758S|GPR112_uc010nsc.1_Missense_Mutation_p.A1730S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1963	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ATCTTTAAGAGCTATCACTTC	0.418			NA											33	15					2.08457e-15	2.74823e-15	0.010818	1	0
SLITRK2	84631	broad.mit.edu	37	X	144904874	144904874	+	Missense_Mutation	SNP	C	C	A			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chrX:144904874C>A	uc004fcd.2	+	5	1921	c.931C>A	c.(931-933)CCA>ACA	p.P311T	SLITRK2_uc010nsp.2_Missense_Mutation_p.P311T|SLITRK2_uc010nso.2_Missense_Mutation_p.P311T|SLITRK2_uc011mwq.1_Missense_Mutation_p.P311T|SLITRK2_uc011mwr.1_Missense_Mutation_p.P311T|SLITRK2_uc011mws.1_Missense_Mutation_p.P311T|SLITRK2_uc004fcg.2_Missense_Mutation_p.P311T|SLITRK2_uc011mwt.1_Missense_Mutation_p.P311T	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	311	Extracellular (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					GAGAAATCGTCCAACTCCTCG	0.552			NA											35	16					1.414e-09	1.64882e-09	0.003755	1	0
C1QA	712	broad.mit.edu	37	1	22965531	22965531	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:22965531delC	uc001bfy.2	+	3	454	c.369delC	c.(367-369)AACfs	p.N123fs	C1QA_uc001bfz.2_Frame_Shift_Del_p.N123fs	NM_015991	NP_057075	P02745	C1QA_HUMAN	complement component 1, q subcomponent, A chain	123	C1q.				cell-cell signaling|complement activation, classical pathway|innate immune response	collagen|complement component C1 complex					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.41e-27)|Colorectal(126;1.52e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.63e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000541)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TTCGGCGGAACCCCCCAATGG	0.622			NA											14	22	---	---	---	---	NA	NA	NA	NA	NA
C1orf129	80133	broad.mit.edu	37	1	170940953	170940974	+	Frame_Shift_Del	DEL	AAGATCCCTCGATTGTAAAACA	AAGATCCCTCGATTGTAAAACA	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	AAGATCCCTCGATTGTAAAACA	AAGATCCCTCGATTGTAAAACA	-	-	AAGATCCCTCGATTGTAAAACA	AAGATCCCTCGATTGTAAAACA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr1:170940953_170940974delAAGATCCCTCGATTGTAAAACA	uc001ghg.2	+	8	675_696	c.545_566delAAGATCCCTCGATTGTAAAACA	c.(544-567)GAAGATCCCTCGATTGTAAAACAAfs	p.E182fs	C1orf129_uc009wvy.2_5'UTR|C1orf129_uc010plz.1_Frame_Shift_Del_p.E182fs	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	182_189							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGTTCCCATGAAGATCCCTCGATTGTAAAACAAGCATCATTG	0.432			NA											52	295	---	---	---	---	NA	NA	NA	NA	NA
SNX1	6642	broad.mit.edu	37	15	64426931	64426937	+	Frame_Shift_Del	DEL	GCGGGAG	GCGGGAG	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	GCGGGAG	GCGGGAG	-	-	GCGGGAG	GCGGGAG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr15:64426931_64426937delGCGGGAG	uc002amv.2	+	12	1326_1332	c.1290_1296delGCGGGAG	c.(1288-1296)AAGCGGGAGfs	p.K430fs	SNX1_uc010bgv.2_Frame_Shift_Del_p.K144fs|SNX1_uc010uio.1_Frame_Shift_Del_p.K430fs|SNX1_uc002amw.2_Intron|SNX1_uc002amx.2_Frame_Shift_Del_p.K365fs|SNX1_uc002amy.2_Frame_Shift_Del_p.K359fs|SNX1_uc010bgw.2_Frame_Shift_Del_p.K332fs	NM_003099	NP_003090	Q13596	SNX1_HUMAN	sorting nexin 1 isoform a	430_432	BAR.				cell communication|early endosome to Golgi transport|endocytosis|intracellular protein transport	early endosome membrane|Golgi apparatus	phosphatidylinositol binding|protein binding|protein transporter activity				0						TGCAGAAGAAGCGGGAGGCCGAGGCTC	0.643			NA											16	21	---	---	---	---	NA	NA	NA	NA	NA
ASXL3	80816	broad.mit.edu	37	18	31319308	31319308	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr18:31319308delC	uc010dmg.1	+	11	1995	c.1940delC	c.(1939-1941)ACAfs	p.T647fs	ASXL3_uc002kxq.2_Frame_Shift_Del_p.T354fs	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	647	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						TCCCTTGAGACAACATTTTGT	0.443			NA											16	25	---	---	---	---	NA	NA	NA	NA	NA
MUC16	94025	broad.mit.edu	37	19	9082881	9082881	+	Frame_Shift_Del	DEL	G	G	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:9082881delG	uc002mkp.2	-	1	9138	c.8934delC	c.(8932-8934)CCCfs	p.P2978fs		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2979	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCCTGAAGTGGGGACTCTGG	0.502			NA											63	62	---	---	---	---	NA	NA	NA	NA	NA
EMP3	2014	broad.mit.edu	37	19	48833629	48833629	+	Frame_Shift_Del	DEL	G	G	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr19:48833629delG	uc002piv.2	+	5	648	c.394delG	c.(394-396)GGGfs	p.G132fs		NM_001425	NP_001416	P54852	EMP3_HUMAN	epithelial membrane protein 3	132					cell growth|negative regulation of cell proliferation	integral to membrane					0		all_epithelial(76;6.08e-07)|all_lung(116;5.76e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.00989)|Prostate(7;0.0143)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.00017)|Epithelial(262;0.0138)|GBM - Glioblastoma multiforme(486;0.0146)		GCACCCGCGAGGGGGCAGCTT	0.617			NA											43	34	---	---	---	---	NA	NA	NA	NA	NA
IL1F9	56300	broad.mit.edu	37	2	113742558	113742558	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:113742558delC	uc002tio.1	+	5	511	c.442delC	c.(442-444)CCCfs	p.P148fs	IL1F9_uc010fkr.1_Frame_Shift_Del_p.P113fs	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	148					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						GAGAGACCAGCCCATCATTCT	0.483	Esophageal Squamous(44;715 981 6239 42838 46707)		NA											29	78	---	---	---	---	NA	NA	NA	NA	NA
LOC401010	401010	broad.mit.edu	37	2	132201558	132201558	+	Frame_Shift_Del	DEL	G	G	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr2:132201558delG	uc002tst.2	-	1	910	c.444delC	c.(442-444)GTCfs	p.V148fs		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						TGCTCCATACGACCACCATTC	0.607			NA											25	22	---	---	---	---	NA	NA	NA	NA	NA
RRP1B	23076	broad.mit.edu	37	21	45113189	45113203	+	In_Frame_Del	DEL	CAGCTCACCCCTGGT	CAGCTCACCCCTGGT	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	CAGCTCACCCCTGGT	CAGCTCACCCCTGGT	-	-	CAGCTCACCCCTGGT	CAGCTCACCCCTGGT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr21:45113189_45113203delCAGCTCACCCCTGGT	uc002zdk.2	+	16	2316_2330	c.2202_2216delCAGCTCACCCCTGGT	c.(2200-2217)GCCAGCTCACCCCTGGTG>GCG	p.SSPLV735del	RRP1B_uc002zdl.2_In_Frame_Del_p.SSPLV268del	NM_015056	NP_055871	Q14684	RRP1B_HUMAN	ribosomal RNA processing 1 homolog B	735_739					rRNA processing	cytosol|nucleolus|preribosome, small subunit precursor	protein binding			skin(1)	1				STAD - Stomach adenocarcinoma(101;0.178)		GCTCACCTGCCAGCTCACCCCTGGTGGCCAAGAAG	0.586			NA											7	17	---	---	---	---	NA	NA	NA	NA	NA
ZNF148	7707	broad.mit.edu	37	3	124996612	124996612	+	Frame_Shift_Del	DEL	T	T	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr3:124996612delT	uc003ehx.3	-	7	1111	c.625delA	c.(625-627)ATAfs	p.I209fs	SLC12A8_uc003ehw.3_Frame_Shift_Del_p.S32fs|ZNF148_uc003ehz.3_Frame_Shift_Del_p.I209fs|ZNF148_uc010hsa.2_Frame_Shift_Del_p.I209fs|ZNF148_uc003eia.3_Frame_Shift_Del_p.I209fs|ZNF148_uc003ehy.2_Frame_Shift_Del_p.I4fs	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	209	C2H2-type 2.				cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						TACTTCTGTATGAAACGCATG	0.338			NA											21	43	---	---	---	---	NA	NA	NA	NA	NA
NDST4	64579	broad.mit.edu	37	4	115998015	115998016	+	Frame_Shift_Ins	INS	-	-	T			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr4:115998015_115998016insT	uc003ibu.2	-	2	856_857	c.177_178insA	c.(175-180)CCATATfs	p.P59fs	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	59_60	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ATTGACCTATATGGTAGAATTT	0.416			NA											29	54	---	---	---	---	NA	NA	NA	NA	NA
NSD1	64324	broad.mit.edu	37	5	176562850	176562850	+	Frame_Shift_Del	DEL	A	A	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr5:176562850delA	uc003mfr.3	+	2	884	c.746delA	c.(745-747)GAAfs	p.E249fs	NSD1_uc003mft.3_Intron|NSD1_uc003mfs.1_Frame_Shift_Del_p.E249fs|NSD1_uc011dfx.1_Intron|NSD1_uc003mfp.2_Frame_Shift_Del_p.E249fs|NSD1_uc003mfq.2_Frame_Shift_Del_p.E249fs	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	249					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		GGCAGCAATGAAAAAGCAGCC	0.413			NA	T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			25	40	---	---	---	---	NA	NA	NA	NA	NA
FASTK	10922	broad.mit.edu	37	7	150774247	150774249	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	TGG	TGG	-	-	TGG	TGG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr7:150774247_150774249delTGG	uc003wix.1	-	8	1464_1466	c.1366_1368delCCA	c.(1366-1368)CCAdel	p.P456del	uc011kvf.1_5'Flank|FASTK_uc003wiw.1_In_Frame_Del_p.P217del|FASTK_uc003wiy.1_In_Frame_Del_p.P315del|FASTK_uc003wiz.1_In_Frame_Del_p.P429del|FASTK_uc003wja.1_3'UTR	NM_006712	NP_006703	Q14296	FASTK_HUMAN	Fas-activated serine/threonine kinase isoform 1	456					apoptosis|induction of apoptosis by extracellular signals|regulation of RNA splicing		ATP binding|Fas-activated serine/threonine kinase activity|protein binding			lung(2)|stomach(2)	4			OV - Ovarian serous cystadenocarcinoma(82;0.00989)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)|LUSC - Lung squamous cell carcinoma(290;0.0718)|Lung(243;0.138)		GGCAGGACCTTGGTGGGTATGGC	0.685			NA											10	64	---	---	---	---	NA	NA	NA	NA	NA
DCAF4L2	138009	broad.mit.edu	37	8	88885101	88885101	+	Frame_Shift_Del	DEL	C	C	-	rs138379350		TCGA-44-7671-01A-11D-2063-08	TCGA-44-7671-10A-01D-2063-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	a9e5a202-125b-4fd6-866e-78c1cf41a9f1	a3fb8d58-8cd9-41b8-b108-b5ca14a116a6	g.chr8:88885101delC	uc003ydz.2	-	1	1196	c.1099delG	c.(1099-1101)GCCfs	p.A367fs		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	367										ovary(1)	1						GAAGAGAAGGCCACACTGGGA	0.582			NA											25	63	---	---	---	---	NA	NA	NA	NA	NA
