Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ASB17	127247	broad.mit.edu	37	1	76397748	76397748	+	Missense_Mutation	SNP	A	A	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr1:76397748A>T	uc001dhe.1	-	1	369	c.229T>A	c.(229-231)TCA>ACA	p.S77T	ASB17_uc001dhf.1_RNA	NM_080868	NP_543144	Q8WXJ9	ASB17_HUMAN	ankyrin repeat and SOCS box-containing 17	77					intracellular signal transduction					ovary(1)	1						CGGTATCCTGATTTTTCCACA	0.383			NA											27	71					0	0	0.003954	0	0
LYST	1130	broad.mit.edu	37	1	235950598	235950598	+	Silent	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr1:235950598G>A	uc001hxj.2	-	14	4939	c.4764C>T	c.(4762-4764)CTC>CTT	p.L1588L	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1588	WD 2.				defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			ATTTGCTTGGGAGGAAAATAT	0.423			NA							Chediak-Higashsyndrome				45	148					0	0	0.013114	0	0
SFMBT2	57713	broad.mit.edu	37	10	7409719	7409719	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr10:7409719C>T	uc009xio.1	-	4	419	c.328G>A	c.(328-330)GGT>AGT	p.G110S	SFMBT2_uc001ijn.1_Missense_Mutation_p.G110S|SFMBT2_uc010qay.1_Missense_Mutation_p.G110S|SFMBT2_uc001ijo.1_Missense_Mutation_p.G110S	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	110	MBT 1.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TCCCCGTAACCGCAGTAGCGC	0.572			NA											4	25					0	0	0.009096	0	0
LOXL4	84171	broad.mit.edu	37	10	100011426	100011426	+	Missense_Mutation	SNP	C	C	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr10:100011426C>G	uc001kpa.1	-	13	2136	c.1985G>C	c.(1984-1986)GGA>GCA	p.G662A		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	662	Lysyl-oxidase like.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		TCCCTGTTCTCCAAAGTTGGC	0.527			NA											3	56					0	0	0.004672	0	0
DCDC1	341019	broad.mit.edu	37	11	31312327	31312327	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr11:31312327C>T	uc001msv.2	-	7	1029	c.827G>A	c.(826-828)CGG>CAG	p.R276Q	DCDC1_uc001msu.1_Intron	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	276					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					CTTGGTTTTCCGTCTTTTGAT	0.378			NA											9	73					0	0	0.006214	0	0
DAGLA	747	broad.mit.edu	37	11	61508792	61508792	+	Silent	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr11:61508792G>A	uc001nsa.2	+	19	2253	c.2142G>A	c.(2140-2142)CCG>CCA	p.P714P		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	714	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		TGGAGCTGCCGACTGCAGACC	0.642			NA											9	30					0	0	0.008291	0	0
FKBP2	2286	broad.mit.edu	37	11	64011314	64011314	+	Silent	SNP	G	G	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr11:64011314G>T	uc001nyy.2	+	5	529	c.333G>T	c.(331-333)GGG>GGT	p.G111G	FKBP2_uc010rnh.1_Silent_p.G111G|FKBP2_uc001nyz.2_Silent_p.G111G	NM_004470	NP_004461	P26885	FKBP2_HUMAN	FK506 binding protein 2, 13kDa precursor	111	PPIase FKBP-type.				protein folding	endoplasmic reticulum membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity|protein binding				0						CTTCAACAGGGTATGGAGAGC	0.562			NA											32	134					3.86903e-22	5.40436e-22	0.013726	1	0
NRXN2	9379	broad.mit.edu	37	11	64434911	64434911	+	Missense_Mutation	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr11:64434911G>A	uc001oar.2	-	10	2048	c.1609C>T	c.(1609-1611)CGG>TGG	p.R537W	NRXN2_uc001oas.2_Missense_Mutation_p.R506W|NRXN2_uc001oaq.2_Missense_Mutation_p.R204W	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	128	Extracellular (Potential).|Laminin G-like.				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						CCCCCAGCCCGCCGGCCCTGG	0.657			NA											11	69					0	0	0.010729	0	0
BBS10	79738	broad.mit.edu	37	12	76740459	76740459	+	Missense_Mutation	SNP	T	T	C			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr12:76740459T>C	uc001syd.1	-	2	1390	c.1306A>G	c.(1306-1308)ACC>GCC	p.T436A		NM_024685	NP_078961	Q8TAM1	BBS10_HUMAN	Bardet-Biedl syndrome 10	436					cellular protein metabolic process|nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	cilium	ATP binding			ovary(1)|skin(1)	2						TGGTCATTGGTTTGTGTCATG	0.368			NA							Bardet-Biedl_syndrome				3	166					0	0	0.004672	0	0
ST8SIA2	8128	broad.mit.edu	37	15	92981770	92981770	+	Missense_Mutation	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr15:92981770G>A	uc002bra.2	+	4	633	c.478G>A	c.(478-480)GTG>ATG	p.V160M	ST8SIA2_uc002brb.2_Missense_Mutation_p.V139M	NM_006011	NP_006002	Q92186	SIA8B_HUMAN	ST8 alpha-N-acetyl-neuraminide	160	Lumenal (Potential).				axon guidance|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity				0	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0355)|OV - Ovarian serous cystadenocarcinoma(32;0.203)			TTGTGCCATCGTGGGCAACTC	0.582			NA											4	64					0	0	0.009096	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857312	9857312	+	Silent	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr16:9857312G>A	uc002czo.3	-	13	4637	c.4089C>T	c.(4087-4089)TCC>TCT	p.S1363S	GRIN2A_uc010uym.1_Silent_p.S1363S|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1363	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AAGGGTTATCGGAGGTGTGGT	0.557			NA											19	81					0	0	0.007413	0	0
TEKT5	146279	broad.mit.edu	37	16	10788536	10788536	+	Silent	SNP	C	C	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr16:10788536C>A	uc002czz.1	-	1	267	c.195G>T	c.(193-195)CCG>CCT	p.P65P		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	65					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						TGCTCTCGTCCGGGCAGGTCT	0.612			NA											21	91					1.96895e-08	2.62526e-08	0.00278	1	0
SALL1	6299	broad.mit.edu	37	16	51171227	51171227	+	Silent	SNP	G	G	A	rs145423593		TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr16:51171227G>A	uc010vgs.1	-	3	3802	c.3771C>T	c.(3769-3771)AAC>AAT	p.N1257N	SALL1_uc010vgr.1_Silent_p.N1160N|SALL1_uc010cbv.2_Silent_p.N109N	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1257					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GGATGCCACCGTTCTGAATGA	0.577	GBM(103;1352 1446 1855 4775 8890)		NA											6	87					0	0	0.00308	0	0
SALL1	6299	broad.mit.edu	37	16	51173150	51173150	+	Missense_Mutation	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr16:51173150G>A	uc010vgs.1	-	2	3014	c.2983C>T	c.(2983-2985)CGG>TGG	p.R995W	SALL1_uc010vgr.1_Missense_Mutation_p.R898W|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	995					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			AATTTACCCCGGTCTCTAAAA	0.433	GBM(103;1352 1446 1855 4775 8890)		NA											6	85					0	0	0.001168	0	0
ESRP2	80004	broad.mit.edu	37	16	68266596	68266596	+	Silent	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr16:68266596G>A	uc010cfa.1	-	7	923	c.735C>T	c.(733-735)CCC>CCT	p.P245P	ESRP2_uc002evp.1_Intron|ESRP2_uc002evq.1_Intron	NM_024939	NP_079215	Q9H6T0	ESRP2_HUMAN	RNA binding motif protein 35B	245					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding|nucleotide binding			ovary(1)	1						TGCTGCTGTAGGGGCAGGGCA	0.587			NA											24	113					0	0	0.00278	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76486488	76486488	+	Missense_Mutation	SNP	C	C	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr16:76486488C>A	uc002feu.1	+	10	1540	c.1155C>A	c.(1153-1155)GAC>GAA	p.D385E	CNTNAP4_uc002fev.1_Missense_Mutation_p.D249E|CNTNAP4_uc010chb.1_Missense_Mutation_p.D312E|CNTNAP4_uc002fex.1_Missense_Mutation_p.D388E|CNTNAP4_uc002few.2_Missense_Mutation_p.D360E	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	385	Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CACTGCCAGACTTCTCTGGAG	0.438			NA											11	155					3.86212e-05	4.65571e-05	0.008291	1	0
ADAMTS18	170692	broad.mit.edu	37	16	77398246	77398246	+	Missense_Mutation	SNP	G	G	C			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr16:77398246G>C	uc002ffc.3	-	5	1230	c.811C>G	c.(811-813)CTA>GTA	p.L271V	ADAMTS18_uc010chc.1_5'Flank|ADAMTS18_uc002ffe.1_Translation_Start_Site|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	271					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TCAAACCTTAGATAGGTGTCC	0.468			NA											4	78					0	0	0.009096	0	0
OR1E1	8387	broad.mit.edu	37	17	3301440	3301440	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr17:3301440C>T	uc002fvj.1	-	1	265	c.265G>A	c.(265-267)GAC>AAC	p.D89N		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGGATGGGTCCTGGTTCTGC	0.507			NA											7	46					0	0	0.00308	0	0
DYNLL2	140735	broad.mit.edu	37	17	56166633	56166633	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr17:56166633C>T	uc010wnn.1	+	3	537	c.263C>T	c.(262-264)TCA>TTA	p.S88L		NM_080677	NP_542408	Q96FJ2	DYL2_HUMAN	dynein, light chain, LC8-type 2	88					activation of pro-apoptotic gene products|induction of apoptosis by intracellular signals|microtubule-based process|transport	centrosome|cytosol|dynein complex|microtubule|myosin complex|plasma membrane	motor activity				0						CTCTTCAAGTCAGGCTAGGTG	0.532			NA											6	68					0	0	0.001168	0	0
SDK2	54549	broad.mit.edu	37	17	71346817	71346817	+	Missense_Mutation	SNP	G	G	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr17:71346817G>T	uc010dfm.2	-	42	5871	c.5871C>A	c.(5869-5871)AGC>AGA	p.S1957R	SDK2_uc002jjt.3_Missense_Mutation_p.S1097R	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1957	Cytoplasmic (Potential).				cell adhesion	integral to membrane				ovary(2)	2						CGTACTTCTTGCTCTGGCCCC	0.547			NA											11	48					2.80697e-09	3.80021e-09	0.010729	1	0
MAP2K7	5609	broad.mit.edu	37	19	7975197	7975197	+	Missense_Mutation	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr19:7975197G>A	uc002mit.2	+	4	451	c.386G>A	c.(385-387)GGC>GAC	p.G129D	MAP2K7_uc002miv.2_Missense_Mutation_p.G129D|MAP2K7_uc010xka.1_RNA|MAP2K7_uc010xkb.1_Missense_Mutation_p.G129D|MAP2K7_uc010dvv.2_Missense_Mutation_p.G4D	NM_145185	NP_660186	O14733	MP2K7_HUMAN	mitogen-activated protein kinase kinase 7	129	Protein kinase.|ATP (By similarity).				activation of JUN kinase activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus	ATP binding|JUN kinase kinase activity|magnesium ion binding|protein binding|protein kinase binding|protein phosphatase binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			large_intestine(7)|central_nervous_system(2)|ovary(1)|lung(1)	11					Etoposide(DB00773)	ATGGGCAGCGGCACCTGCGGC	0.672			NA											3	18					0	0	0.009096	0	0
EPS15L1	58513	broad.mit.edu	37	19	16548580	16548580	+	Splice_Site	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr19:16548580C>T	uc002ndz.1	-	5	315	c.309_splice	c.e5+1	p.F103_splice	EPS15L1_uc002ndx.2_Splice_Site_p.F103_splice|EPS15L1_uc002ndy.2_Splice_Site|EPS15L1_uc010xpe.1_5'Flank|EPS15L1_uc010xpf.1_Splice_Site_p.F6_splice|EPS15L1_uc002nea.1_Splice_Site_p.F103_splice|EPS15L1_uc010eah.1_Splice_Site_p.F103_splice|EPS15L1_uc002neb.1_5'Flank|EPS15L1_uc002nec.1_Splice_Site_p.F103_splice	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway						endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						TGGACACTCACAAATTTAGGC	0.358			NA											13	57					0	0	0.003163	0	0
GPATCH1	55094	broad.mit.edu	37	19	33584407	33584407	+	Missense_Mutation	SNP	A	A	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr19:33584407A>G	uc002nug.1	+	4	751	c.437A>G	c.(436-438)GAC>GGC	p.D146G		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	146						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					CTCCTTGATGACCTCATAACG	0.478	Pancreas(67;88 1713 4567 18227)		NA											3	166					0	0	0.009096	0	0
HRC	3270	broad.mit.edu	37	19	49657720	49657720	+	Missense_Mutation	SNP	C	C	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr19:49657720C>G	uc002pmv.2	-	1	962	c.775G>C	c.(775-777)GAT>CAT	p.D259H		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	259	4 X tandem repeats, acidic.|Asp-rich (acidic).|1-2.|6 X approximate tandem repeats.				muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		Acatcatcatcatcatcatca	0.388	Melanoma(37;75 1097 24567 25669 30645)		NA											4	34					0	0	0.009096	0	0
GRHL1	29841	broad.mit.edu	37	2	10130834	10130834	+	Missense_Mutation	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr2:10130834G>A	uc002raa.2	+	10	1451	c.1280G>A	c.(1279-1281)CGG>CAG	p.R427Q	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Missense_Mutation_p.R238Q|GRHL1_uc010yjb.1_Missense_Mutation_p.R276Q	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	427					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		GGAGCTGAGCGGAAAATCAGG	0.423			NA											6	18					0	0	0.001168	0	0
NT5C1B	93034	broad.mit.edu	37	2	18766072	18766072	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr2:18766072C>T	uc002rcz.2	-	5	715	c.611G>A	c.(610-612)CGG>CAG	p.R204Q	NT5C1B_uc002rcy.2_Missense_Mutation_p.R204Q|NT5C1B_uc010exr.2_Missense_Mutation_p.R146Q|NT5C1B_uc010yju.1_Missense_Mutation_p.R144Q|NT5C1B_uc002rda.2_Missense_Mutation_p.R144Q|NT5C1B_uc010yjv.1_Missense_Mutation_p.R221Q|NT5C1B_uc010yjw.1_Missense_Mutation_p.R187Q|NT5C1B_uc010exs.2_Missense_Mutation_p.R206Q|NT5C1B_uc002rdb.1_5'UTR	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	204					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GGTGCTGCGCCGGGAGCCAGG	0.711			NA											8	27					0	0	0.004482	0	0
CEBPZ	10153	broad.mit.edu	37	2	37454813	37454813	+	Missense_Mutation	SNP	A	A	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr2:37454813A>G	uc002rpz.2	-	2	1553	c.1523T>C	c.(1522-1524)ATT>ACT	p.I508T		NM_005760	NP_005751	Q03701	CEBPZ_HUMAN	CCAAT/enhancer binding protein zeta	508					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding			pancreas(1)	1		all_hematologic(82;0.21)				CAGTGTGTCAATCTGCTCCCT	0.378			NA											15	57					0	0	0.00245	0	0
CCT7	10574	broad.mit.edu	37	2	73467659	73467659	+	Silent	SNP	C	C	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr2:73467659C>A	uc002siz.2	+	3	357	c.255C>A	c.(253-255)TCC>TCA	p.S85S	CCT7_uc002sja.2_Intron|CCT7_uc010yrf.1_Silent_p.S41S|CCT7_uc010feu.2_Silent_p.S85S|CCT7_uc010yrg.1_Intron|CCT7_uc010yrh.1_5'UTR|CCT7_uc010yri.1_Intron	NM_006429	NP_006420	Q99832	TCPH_HUMAN	chaperonin containing TCP1, subunit 7 isoform a	85					'de novo' posttranslational protein folding		ATP binding|unfolded protein binding				0						TTGCCAAATCCCAAGATGCTG	0.368			NA											6	48					3.59834e-05	4.39797e-05	0.001168	1	0
ST6GAL2	84620	broad.mit.edu	37	2	107460326	107460326	+	Silent	SNP	A	A	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr2:107460326A>G	uc002tdq.2	-	2	227	c.108T>C	c.(106-108)GCT>GCC	p.A36A	ST6GAL2_uc002tdr.2_Silent_p.A36A|ST6GAL2_uc002tds.3_Silent_p.A36A	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	36	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity	p.A36T(1)		pancreas(6)|ovary(4)|skin(1)	11						GTACAGGCTCAGCGGGGTTGC	0.582			NA											4	65					0	0	0.000602	0	0
DDX11L2	84771	broad.mit.edu	37	2	114357557	114357557	+	Nonstop_Mutation	SNP	A	A	G	rs115341812	by1000genomes	TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr2:114357557A>G	uc010yxx.1	-	3	709	c.382T>C	c.(382-384)TAG>CAG	p.*128Q						SubName: Full=DEAD/H box polypeptide 11 like 2;												0						GCCTACTTCTAGTGAAACTGG	0.567			NA											3	26					0	0	0.004672	0	0
SCN7A	6332	broad.mit.edu	37	2	167327178	167327178	+	Missense_Mutation	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr2:167327178G>A	uc002udu.1	-	6	738	c.611C>T	c.(610-612)ACG>ATG	p.T204M	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	204	Helical; Voltage-sensor; Name=S4 of repeat I; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						AGTTTGAAGCGTTGGAATGAA	0.299			NA											6	34					0	0	0.004482	0	0
TTN	7273	broad.mit.edu	37	2	179584290	179584290	+	Missense_Mutation	SNP	G	G	C			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr2:179584290G>C	uc010zfg.1	-	79	20421	c.20197C>G	c.(20197-20199)CAT>GAT	p.H6733D	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.H3394D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7660							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGAAACATGGACGGATACA	0.398			NA											28	254					0	0	0.007291	0	0
MYEOV2	150678	broad.mit.edu	37	2	241073371	241073371	+	Missense_Mutation	SNP	C	C	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr2:241073371C>A	uc010zof.1	-	2	161	c.115G>T	c.(115-117)GTT>TTT	p.V39F	MYEOV2_uc002vyu.1_Missense_Mutation_p.V70F	NM_001163424	NP_001156896	Q8WXC6	MYOV2_HUMAN	hypothetical protein LOC150678 isoform 2	39											0		all_epithelial(40;1.56e-11)|Breast(86;0.0002)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.81e-30)|all cancers(36;1.1e-27)|OV - Ovarian serous cystadenocarcinoma(60;2.74e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.54e-06)|Lung(119;0.00361)|LUSC - Lung squamous cell carcinoma(224;0.0153)|Colorectal(34;0.0202)|COAD - Colon adenocarcinoma(134;0.143)		TCTGCATGAACGGCCTTTTCA	0.483			NA											41	103					6.48837e-15	8.9215e-15	0.010771	1	0
BRD1	23774	broad.mit.edu	37	22	50216780	50216780	+	Silent	SNP	T	T	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr22:50216780T>G	uc003biv.2	-	1	1673	c.1186A>C	c.(1186-1188)AGG>CGG	p.R396R	BRD1_uc011arf.1_5'UTR|BRD1_uc011arg.1_Silent_p.R396R|BRD1_uc011arh.1_Silent_p.R396R|BRD1_uc003biu.3_Silent_p.R396R	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	396					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		TTCAGAGGCCTCCGGGTGCAG	0.532			NA											5	209					0	0	0.001168	0	0
SPATA16	83893	broad.mit.edu	37	3	172835183	172835183	+	Silent	SNP	A	A	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr3:172835183A>G	uc003fin.3	-	2	497	c.339T>C	c.(337-339)CCT>CCC	p.P113P		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	113					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			AGGGGATGTGAGGCAGAGGCA	0.413			NA											3	131					0	0	0.004672	0	0
FRAS1	80144	broad.mit.edu	37	4	79410160	79410160	+	Missense_Mutation	SNP	G	G	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr4:79410160G>T	uc003hlb.2	+	59	9324	c.8884G>T	c.(8884-8886)GCT>TCT	p.A2962S		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2957	Calx-beta 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GAGCCATTCCGCTCAGGTCAT	0.502			NA											10	50					7.48243e-07	9.68314e-07	0.006214	1	0
ANK2	287	broad.mit.edu	37	4	114170985	114170985	+	Missense_Mutation	SNP	G	G	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr4:114170985G>T	uc003ibe.3	+	10	1057	c.957G>T	c.(955-957)TTG>TTT	p.L319F	ANK2_uc003ibd.3_Missense_Mutation_p.L298F|ANK2_uc003ibf.3_Missense_Mutation_p.L319F|ANK2_uc003ibc.2_Missense_Mutation_p.L295F|ANK2_uc011cgb.1_Missense_Mutation_p.L334F	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	319	ANK 9.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AACTTCTGTTGGAACGGGGTG	0.453			NA											17	57					1.15919e-05	1.43674e-05	0.008871	1	0
NPY1R	4886	broad.mit.edu	37	4	164247318	164247318	+	Missense_Mutation	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr4:164247318G>A	uc003iqm.1	-	2	655	c.389C>T	c.(388-390)TCT>TTT	p.S130F	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	130	Helical; Name=3; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GAGAACCAGAGAGAAAATGGA	0.423			NA											13	61					0	0	0.003163	0	0
ADCY2	108	broad.mit.edu	37	5	7706887	7706887	+	Silent	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr5:7706887C>T	uc003jdz.1	+	8	1207	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I	ADCY2_uc011cmo.1_Silent_p.I200I	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	380	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GAGTTGATATCAACATGCGCG	0.463			NA											16	242					0	0	0.00499	0	0
BASP1	10409	broad.mit.edu	37	5	17275411	17275411	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr5:17275411C>T	uc003jfx.2	+	2	265	c.86C>T	c.(85-87)GCG>GTG	p.A29V		NM_006317	NP_006308	P80723	BASP1_HUMAN	brain abundant, membrane attached signal protein	29					glomerular visceral epithelial cell differentiation|negative regulation of transcription, DNA-dependent	cytoplasm|cytoskeleton|growth cone|nuclear speck|plasma membrane	protein domain specific binding|transcription corepressor activity|transcription regulatory region DNA binding				0						GCCGAGGGCGCGGCGACGGAA	0.627			NA											4	58					0	0	0.009096	0	0
CDH10	1008	broad.mit.edu	37	5	24537504	24537504	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr5:24537504C>T	uc003jgr.1	-	3	843	c.511G>A	c.(511-513)GAA>AAA	p.E171K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	171	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ACAGACATTTCGGGAACACTA	0.333			NA								HNSCC(23;0.051)			17	198					0	0	0.00499	0	0
ADAM19	8728	broad.mit.edu	37	5	156915310	156915310	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr5:156915310C>T	uc003lwz.2	-	21	2577	c.2513G>A	c.(2512-2514)CGG>CAG	p.R838Q	ADAM19_uc003lww.1_Missense_Mutation_p.R571Q|ADAM19_uc003lwy.2_Missense_Mutation_p.R437Q|ADAM19_uc011ddr.1_Missense_Mutation_p.R769Q	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	838	Cytoplasmic (Potential).|SH3-binding (Potential).|SH3-binding (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGGAATTGGCCGGCTTGGAGG	0.572			NA											17	145					0	0	0.006122	0	0
RARS	5917	broad.mit.edu	37	5	167922429	167922429	+	Missense_Mutation	SNP	A	A	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr5:167922429A>G	uc003lzx.2	+	6	730	c.689A>G	c.(688-690)TAT>TGT	p.Y230C	RARS_uc011deo.1_Missense_Mutation_p.Y24C	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	230					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		TTTGCAGGGTATGACGTGCTC	0.408			NA											7	168					0	0	0.001984	0	0
SLC22A2	6582	broad.mit.edu	37	6	160679385	160679385	+	Silent	SNP	G	G	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr6:160679385G>T	uc003qtf.2	-	1	575	c.405C>A	c.(403-405)ATC>ATA	p.I135I	SLC22A2_uc003qte.1_Silent_p.I135I|SLC22A2_uc003qth.1_Silent_p.I135I	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	135	Extracellular (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		CCTCGGTGACGATGGACGAGC	0.617			NA											7	76					2.7689e-08	3.63676e-08	0.001984	1	0
AKAP9	10142	broad.mit.edu	37	7	91645514	91645514	+	Silent	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr7:91645514G>A	uc003ulg.2	+	11	3909	c.3684G>A	c.(3682-3684)GAG>GAA	p.E1228E	AKAP9_uc003ule.2_Silent_p.E1240E|AKAP9_uc003ulf.2_Silent_p.E1228E|AKAP9_uc003uli.2_Silent_p.E853E	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1240					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AAGACAAAGAGAATTCTGGTG	0.294			NA	T	BRAF	papillary thyroid								6	51					0	0	0.001168	0	0
ACHE	43	broad.mit.edu	37	7	100491461	100491461	+	Silent	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr7:100491461G>A	uc003uxd.2	-	1	549	c.393C>T	c.(391-393)AAC>AAT	p.N131N	ACHE_uc003uxe.2_Silent_p.N131N|ACHE_uc003uxf.2_Silent_p.N131N|ACHE_uc003uxg.2_Silent_p.N131N|ACHE_uc003uxh.2_Silent_p.N131N|ACHE_uc003uxi.2_Silent_p.N131N|ACHE_uc003uxj.1_Silent_p.N250N	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor	131					acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	GTGTCCACACGTTGAGGTACA	0.592			NA											5	140					0	0	0.001168	0	0
CHRM2	1129	broad.mit.edu	37	7	136700046	136700046	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr7:136700046C>T	uc003vtf.1	+	4	1057	c.434C>T	c.(433-435)GCA>GTA	p.A145V	CHRM2_uc003vtg.1_Missense_Mutation_p.A145V|CHRM2_uc003vtj.1_Missense_Mutation_p.A145V|CHRM2_uc003vtk.1_Missense_Mutation_p.A145V|CHRM2_uc003vtl.1_Missense_Mutation_p.A145V|CHRM2_uc003vtm.1_Missense_Mutation_p.A145V|CHRM2_uc003vti.1_Missense_Mutation_p.A145V|CHRM2_uc003vto.1_Missense_Mutation_p.A145V|CHRM2_uc003vtn.1_Missense_Mutation_p.A145V|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	145	Helical; Name=4; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	ATGATGATTGCAGCTGCCTGG	0.498			NA											5	173					0	0	0.001168	0	0
KCNV2	169522	broad.mit.edu	37	9	2719006	2719006	+	Missense_Mutation	SNP	T	T	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr9:2719006T>G	uc003zho.1	+	1	1481	c.1267T>G	c.(1267-1269)TTC>GTC	p.F423V		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	423	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		CATGGGCATCTTCACTTTCTC	0.632			NA											5	35					0	0	0.000602	0	0
CORO2A	7464	broad.mit.edu	37	9	100893269	100893269	+	Missense_Mutation	SNP	C	C	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr9:100893269C>G	uc004ayl.2	-	7	1104	c.838G>C	c.(838-840)GCG>CCG	p.A280P	CORO2A_uc004aym.2_Missense_Mutation_p.A280P	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	280	WD 5.				actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				CTGGTGTCCGCGTCATAGAAG	0.652			NA											3	26					0	0	0.009096	0	0
ROD1	9991	broad.mit.edu	37	9	115092722	115092722	+	Missense_Mutation	SNP	T	T	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr9:115092722T>A	uc004bfw.2	-	2	228	c.41A>T	c.(40-42)AAG>ATG	p.K14M	ROD1_uc004bfv.2_Intron|ROD1_uc004bfx.2_Missense_Mutation_p.K14M|ROD1_uc011lwu.1_Intron|ROD1_uc004bfy.2_Intron|ROD1_uc004bfz.2_Intron	NM_005156	NP_005147	O95758	ROD1_HUMAN	ROD1 regulator of differentiation 1 isoform 1	14					anatomical structure morphogenesis|mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1						GATTCCTACCTTTAAACCGAC	0.289			NA											13	62					0	0	0.00499	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123298731	123298731	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr9:123298731C>T	uc004bkf.2	-	7	762	c.581G>A	c.(580-582)CGT>CAT	p.R194H	CDK5RAP2_uc004bkg.2_Missense_Mutation_p.R194H|CDK5RAP2_uc011lxw.1_5'UTR|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_5'UTR|CDK5RAP2_uc011lya.1_5'UTR|CDK5RAP2_uc004bkh.1_Missense_Mutation_p.R194H|CDK5RAP2_uc004bki.2_5'UTR	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	194					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						GCTTTCCAAACGCAACCGAAG	0.517			NA											8	65					0	0	0.00308	0	0
SSNA1	8636	broad.mit.edu	37	9	140083651	140083651	+	Silent	SNP	A	A	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr9:140083651A>G	uc004cls.2	+	2	311	c.186A>G	c.(184-186)GCA>GCG	p.A62A	ANAPC2_uc004clq.1_5'Flank|ANAPC2_uc004clr.1_5'Flank|ANAPC2_uc011mer.1_5'Flank	NM_003731	NP_003722	O43805	SSNA1_HUMAN	nuclear autoantigen of 14 kDa	62	Potential.				G2/M transition of mitotic cell cycle	centrosome|cytosol|nucleus				breast(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.43e-05)|Epithelial(140;0.00087)		AGAACCTGGCACGCAAGATTG	0.647			NA											5	24					0	0	0.001168	0	0
RPS6KA3	6197	broad.mit.edu	37	X	20195194	20195194	+	Missense_Mutation	SNP	A	A	G			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chrX:20195194A>G	uc004czu.2	-	11	854	c.854T>C	c.(853-855)CTT>CCT	p.L285P	RPS6KA3_uc011mjk.1_Missense_Mutation_p.L256P|RPS6KA3_uc004czv.2_Missense_Mutation_p.L273P|RPS6KA3_uc011mjl.1_Missense_Mutation_p.L257P|RPS6KA3_uc011mjm.1_Missense_Mutation_p.L257P	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	285	Protein kinase 1.				axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						TGGCATTCCAAGTTTGGCTCT	0.254			NA											45	154					0	0	0.01441	0	0
MED14	9282	broad.mit.edu	37	X	40569230	40569230	+	Splice_Site	SNP	C	C	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chrX:40569230C>A	uc004dex.3	-	9	1313	c.1173_splice	c.e9+1	p.K391_splice	MED14_uc010nhe.1_Splice_Site_p.K275_splice	NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14						androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						AGATCTTTTACCTTCATGGCT	0.303			NA											13	33					0.000151284	0.000179906	0.001855	1	0
FAM120C	54954	broad.mit.edu	37	X	54209079	54209079	+	Missense_Mutation	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chrX:54209079G>A	uc004dsz.3	-	1	636	c.553C>T	c.(553-555)CGT>TGT	p.R185C	FAM120C_uc011moh.1_Missense_Mutation_p.R185C|FAM120C_uc004dta.2_Missense_Mutation_p.R185C	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	185										ovary(1)|central_nervous_system(1)	2						TGGCACCGACGGCCCCACTCG	0.716			NA											4	38					0	0	0.009096	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125298988	125298988	+	Missense_Mutation	SNP	C	C	T			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chrX:125298988C>T	uc004euk.1	-	1	947	c.920G>A	c.(919-921)CGA>CAA	p.R307Q		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	307										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						CACATTCTCTCGGCAGTAGGG	0.607			NA											23	245					0	0	0.003954	0	0
F9	2158	broad.mit.edu	37	X	138630531	138630531	+	Missense_Mutation	SNP	G	G	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chrX:138630531G>A	uc004fas.1	+	5	430	c.401G>A	c.(400-402)TGT>TAT	p.C134Y	F9_uc004fat.1_Missense_Mutation_p.C96Y	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	134	EGF-like 2.		C -> Y (in HEMB).		blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	GATGTAACATGTAACATTAAG	0.363			NA											9	234					0	0	0.006214	0	0
GLIPR1	11010	broad.mit.edu	37	12	75884200	75884201	+	Frame_Shift_Ins	INS	-	-	A			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr12:75884200_75884201insA	uc001sxs.2	+	3	583_584	c.435_436insA	c.(433-438)GATAGTfs	p.D145fs	GLIPR1_uc009zsb.1_Frame_Shift_Ins_p.I169fs	NM_006851	NP_006842	P48060	GLIP1_HUMAN	GLI pathogenesis-related 1 precursor	145_146					cellular lipid metabolic process	extracellular region|integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3						TTTGGGCAGATAGTTACAAAGT	0.386			NA											14	104	---	---	---	---	NA	NA	NA	NA	NA
UBA3	9039	broad.mit.edu	37	3	69129290	69129292	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	CTT	CTT	-	-	CTT	CTT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr3:69129290_69129292delCTT	uc003dno.2	-	2	53_55	c.33_35delAAG	c.(31-36)AGAAGG>AGG	p.11_12RR>R	UBA3_uc003dnq.2_Intron|UBA3_uc011bfy.1_Intron|UBA3_uc011bfz.1_Intron	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	11_12					protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		CTCTATTCTCCTTCTTTTCTTCT	0.665			NA											18	57	---	---	---	---	NA	NA	NA	NA	NA
ZNF318	24149	broad.mit.edu	37	6	43305942	43305954	+	Frame_Shift_Del	DEL	TTCTAGAAGCTGA	TTCTAGAAGCTGA	-			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	TTCTAGAAGCTGA	TTCTAGAAGCTGA	-	-	TTCTAGAAGCTGA	TTCTAGAAGCTGA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr6:43305942_43305954delTTCTAGAAGCTGA	uc003oux.2	-	10	5860_5872	c.5782_5794delTCAGCTTCTAGAA	c.(5782-5796)TCAGCTTCTAGAACTfs	p.S1928fs	ZNF318_uc003ouw.2_Intron	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	1928_1932					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			TACCTAGAAGTTCTAGAAGCTGATTCTGGAGCT	0.413			NA											27	138	---	---	---	---	NA	NA	NA	NA	NA
CTAGE6	340307	broad.mit.edu	37	7	143453350	143453353	+	Frame_Shift_Del	DEL	CCAA	CCAA	-			TCGA-49-4512-01A-21D-1855-08	TCGA-49-4512-11A-01D-1855-08	CCAA	CCAA	-	-	CCAA	CCAA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fa6a60f5-8949-4e01-9435-d3117601627f	f76ef845-8a03-4b61-b1b2-3f0b4ae5a759	g.chr7:143453350_143453353delCCAA	uc003wdk.3	-	1	1491_1494	c.1399_1402delTTGG	c.(1399-1404)TTGGCAfs	p.L467fs	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	467_468	Potential.					integral to membrane					0	Melanoma(164;0.0903)					GTCCGAGCTGCCAACCAATTATCA	0.348			NA											13	172	---	---	---	---	NA	NA	NA	NA	NA
