Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PTPRF	5792	broad.mit.edu	37	1	44069145	44069145	+	Missense_Mutation	SNP	A	A	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:44069145A>C	uc001cjr.2	+	15	2739	c.2399A>C	c.(2398-2400)TAT>TCT	p.Y800S	PTPRF_uc001cjs.2_Missense_Mutation_p.Y791S|PTPRF_uc001cju.2_Missense_Mutation_p.Y371S|PTPRF_uc009vwt.2_Missense_Mutation_p.Y362S|PTPRF_uc001cjv.2_Missense_Mutation_p.Y260S|PTPRF_uc001cjw.2_Missense_Mutation_p.Y26S	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	800	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GTTGCTGCCTATACCACCAAG	0.592			NA											18	63					0	0	0.007413	0	0
USP1	7398	broad.mit.edu	37	1	62910726	62910726	+	Nonsense_Mutation	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:62910726C>G	uc001daj.1	+	6	1203	c.875C>G	c.(874-876)TCA>TGA	p.S292*	USP1_uc001dak.1_Nonsense_Mutation_p.S292*|USP1_uc001dal.1_Nonsense_Mutation_p.S292*	NM_001017415	NP_001017415	O94782	UBP1_HUMAN	ubiquitin specific protease 1	292					DNA repair|monoubiquitinated protein deubiquitination|regulation of DNA repair|response to UV|ubiquitin-dependent protein catabolic process	nucleoplasm	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1		all_neural(321;0.0281)		BRCA - Breast invasive adenocarcinoma(111;8.01e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00245)|OV - Ovarian serous cystadenocarcinoma(397;0.0535)		GAACACCAGTCATTGGAAGAG	0.328	Ovarian(122;1846 2315 3982 19504)		NA											23	52					0	0	0.014323	0	0
JAK1	3716	broad.mit.edu	37	1	65300251	65300251	+	Missense_Mutation	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:65300251T>A	uc001dbu.1	-	25	3708	c.3459A>T	c.(3457-3459)TTA>TTT	p.L1153F	JAK1_uc009wam.1_Missense_Mutation_p.L1141F|JAK1_uc009wal.1_Missense_Mutation_p.L330F	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	1153	Protein kinase 2.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		CTTCTTATTTTAAAAGTGCTT	0.328			NA	Mis		ALL								4	48					0	0	0.009096	0	0
ELTD1	64123	broad.mit.edu	37	1	79403965	79403965	+	Splice_Site	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:79403965C>G	uc001diq.3	-	5	553	c.397_splice	c.e5-1	p.I133_splice		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain						neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TGGATCTGATCTGAGAAAAAA	0.313			NA											8	13					0	0	0.00308	0	0
COL11A1	1301	broad.mit.edu	37	1	103431093	103431093	+	Missense_Mutation	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:103431093A>T	uc001dul.2	-	38	3184	c.2866T>A	c.(2866-2868)TTT>ATT	p.F956I	COL11A1_uc001duk.2_Missense_Mutation_p.F152I|COL11A1_uc001dum.2_Missense_Mutation_p.F968I|COL11A1_uc001dun.2_Missense_Mutation_p.F917I|COL11A1_uc009weh.2_Missense_Mutation_p.F840I	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	956	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTGCCTTGAAATCCCTAAGGA	0.383			NA											27	87					0	0	0.008361	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858886	149858886	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:149858886C>T	uc001etd.2	+	1	362	c.362C>T	c.(361-363)ACC>ATC	p.T121I	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	121					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CCAAAGAAAACCGAAAGCCAC	0.473			NA											19	99					0	0	0.010504	0	0
TCHH	7062	broad.mit.edu	37	1	152079909	152079909	+	Missense_Mutation	SNP	G	G	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:152079909G>C	uc001ezp.2	-	2	5784	c.5784C>G	c.(5782-5784)AGC>AGG	p.S1928R	TCHH_uc009wne.1_Missense_Mutation_p.S1928R	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1928					keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CATAGAGAGGGCTGGAGCGCA	0.542			NA											9	191					0	0	0.006214	0	0
SLC25A44	9673	broad.mit.edu	37	1	156180134	156180134	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:156180134C>T	uc001fnp.2	+	4	1179	c.857C>T	c.(856-858)ACA>ATA	p.T286I	SLC25A44_uc010phc.1_Missense_Mutation_p.T177I|SLC25A44_uc009wrr.2_Missense_Mutation_p.T294I|SLC25A44_uc010phd.1_RNA|SLC25A44_uc010phe.1_RNA|PMF1_uc009wru.1_5'Flank|PMF1_uc001fnq.2_5'Flank|PMF1_uc001fnr.2_5'Flank|BGLAP_uc001fns.1_5'Flank	NM_014655	NP_055470	Q96H78	S2544_HUMAN	solute carrier family 25, member 44	286	Solcar 3.|Helical; Name=6; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding			ovary(1)	1	Hepatocellular(266;0.158)					ATCTCAGCCACACCTTCCACC	0.567			NA											6	71					0	0	0.001168	0	0
CD5L	922	broad.mit.edu	37	1	157805889	157805889	+	Nonsense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:157805889C>A	uc001frk.3	-	3	255	c.112G>T	c.(112-114)GAG>TAG	p.E38*		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	38	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TGTTCCACCTCCACCCGCCCT	0.632			NA											40	74					1.59361e-14	2.20724e-14	0.006999	1	0
RXRG	6258	broad.mit.edu	37	1	165398047	165398047	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:165398047G>T	uc001gda.2	-	2	506	c.206C>A	c.(205-207)CCA>CAA	p.P69Q		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	69	Modulating (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	GACTCGATATGGAGAGCCCAG	0.607			NA											7	58					0.00307968	0.00337365	0.00308	1	0
DPT	1805	broad.mit.edu	37	1	168683502	168683502	+	Missense_Mutation	SNP	A	A	T	rs149928380	by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:168683502A>T	uc001gfp.2	-	2	404	c.388T>A	c.(388-390)TTT>ATT	p.F130I		NM_001937	NP_001928	Q07507	DERM_HUMAN	dermatopontin precursor	130	2 X 53-55 AA tandem repeats.|2-2.|1-2.|3 X 6 AA repeats of D-R-[EQ]-W-[NQK]- [FY].				cell adhesion	extracellular space|proteinaceous extracellular matrix				ovary(1)	1	all_hematologic(923;0.208)					CAACAGTAAAACTGCCACTCC	0.572			NA											4	63					0	0	0.009096	0	0
NPL	80896	broad.mit.edu	37	1	182791305	182791305	+	Missense_Mutation	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:182791305A>G	uc009wyb.2	+	11	849	c.709A>G	c.(709-711)AAG>GAG	p.K237E	NPL_uc010pnx.1_3'UTR|NPL_uc010pny.1_Intron|NPL_uc001gpo.1_Missense_Mutation_p.K218E|NPL_uc009wyc.2_Intron|NPL_uc001gpp.3_Missense_Mutation_p.K237E|NPL_uc001gpq.1_Missense_Mutation_p.K237E	NM_030769	NP_110396	Q9BXD5	NPL_HUMAN	N-acetylneuraminate pyruvate lyase	237					carbohydrate metabolic process	cytoplasm	N-acetylneuraminate lyase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TTTTGAACAAAAGGACTTCTC	0.393			NA											4	47					0	0	0.009096	0	0
GLT25D2	23127	broad.mit.edu	37	1	183923911	183923911	+	Missense_Mutation	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:183923911C>G	uc001gqr.2	-	7	1386	c.1014G>C	c.(1012-1014)AAG>AAC	p.K338N	GLT25D2_uc010poj.1_Missense_Mutation_p.K338N|GLT25D2_uc001gqq.2_Missense_Mutation_p.K75N|GLT25D2_uc001gqs.2_Missense_Mutation_p.K218N	NM_015101	NP_055916	Q8IYK4	GT252_HUMAN	glycosyltransferase 25 domain containing 2	338					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity			ovary(1)|breast(1)	2						CAAATCCCATCTTGTCTGGAT	0.463	Esophageal Squamous(10;42 606 18489 38825)		NA											10	87					0	0	0.006214	0	0
CFH	3075	broad.mit.edu	37	1	196658660	196658660	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:196658660G>A	uc001gtj.3	+	8	1315	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	CFH_uc001gti.3_Missense_Mutation_p.E359K|CFH_uc009wyw.2_Missense_Mutation_p.E334K|CFH_uc009wyx.2_Missense_Mutation_p.E295K	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	359	Sushi 6.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TTACTGTGATGAACATTTTGA	0.408			NA											30	58					0	0	0.007291	0	0
CRB1	23418	broad.mit.edu	37	1	197404356	197404357	+	Nonsense_Mutation	DNP	GG	GG	TT			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:197404356_197404357GG>TT	uc001gtz.2	+	9	3498_3499	c.3363_3364GG>TT	c.(3361-3366)CAGGAA>CATTAA	p.1121_1122QE>H*	CRB1_uc010poz.1_Nonsense_Mutation_p.1097_1098QE>H*|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Nonsense_Mutation_p.1009_1010QE>H*|CRB1_uc010ppb.1_Intron|CRB1_uc010ppd.1_Nonsense_Mutation_p.602_603QE>H*|CRB1_uc001gub.1_Nonsense_Mutation_p.770_771QE>H*	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1121_1122	Extracellular (Potential).|Laminin G-like 3.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ATAAACCTCAGGAAGAGCAATT	0.396			NA											23	60					0	0	0.004672	0	0
OPTC	26254	broad.mit.edu	37	1	203467938	203467938	+	Missense_Mutation	SNP	G	G	A	rs114769450	byFrequency	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:203467938G>A	uc001gzu.1	+	4	616	c.500G>A	c.(499-501)CGT>CAT	p.R167H		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	167	LRR 1.					proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			CGCATCAGCCGTATCAGGGCC	0.552			NA											33	46					0	0	0.019004	0	0
NFASC	23114	broad.mit.edu	37	1	204943942	204943942	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:204943942G>A	uc001hbj.2	+	14	1877	c.1549G>A	c.(1549-1551)GAG>AAG	p.E517K	NFASC_uc001hbh.2_Missense_Mutation_p.E517K|NFASC_uc010pqz.1_Missense_Mutation_p.E511K|NFASC_uc010pra.1_Missense_Mutation_p.E528K|NFASC_uc001hbi.2_Missense_Mutation_p.E528K|NFASC_uc010prb.1_Missense_Mutation_p.E528K|NFASC_uc010prc.1_Missense_Mutation_p.E84K|NFASC_uc001hbk.1_Missense_Mutation_p.E338K	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	517	Extracellular (Potential).|Ig-like C2-type 5.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			AGTCCGCCTGGAGGTCAAAGG	0.512			NA											18	54					0	0	0.006122	0	0
LGTN	1939	broad.mit.edu	37	1	206772426	206772426	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:206772426C>T	uc001heh.2	-	11	1432	c.1223G>A	c.(1222-1224)GGC>GAC	p.G408D	LGTN_uc009xbw.2_Missense_Mutation_p.G284D	NM_006893	NP_008824	P41214	EIF2D_HUMAN	ligatin	408					intracellular protein transport	cytoplasm	protein binding|receptor activity|translation initiation factor activity				0	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			GACCTCACTGCCCTCCAGAAA	0.498			NA											11	71					0	0	0.008291	0	0
DYRK3	8444	broad.mit.edu	37	1	206821060	206821060	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:206821060C>T	uc001hej.2	+	3	685	c.517C>T	c.(517-519)CCA>TCA	p.P173S	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Missense_Mutation_p.P153S	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	173					erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			CTTTGTAGGTCCAAATGCCAA	0.423	Melanoma(164;427 2622 26826 51707)		NA											44	79					0	0	0.009718	0	0
HLX	3142	broad.mit.edu	37	1	221055563	221055563	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:221055563C>T	uc001hmv.3	+	3	1287	c.830C>T	c.(829-831)TCA>TTA	p.S277L		NM_021958	NP_068777	Q14774	HLX_HUMAN	H2.0-like homeobox	277	Homeobox.				cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				GBM - Glioblastoma multiforme(131;0.00914)		AGGAAGCGTTCATGGTCGCGC	0.572			NA											17	37					0	0	0.006122	0	0
OR2M7	391196	broad.mit.edu	37	1	248487582	248487582	+	Missense_Mutation	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:248487582A>T	uc010pzk.1	-	1	289	c.289T>A	c.(289-291)TGT>AGT	p.C97S		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGTGTGGCACAGCCAGCCATA	0.483			NA											167	251					0	0	0.01441	0	0
PTPLA	9200	broad.mit.edu	37	10	17636278	17636278	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr10:17636278C>A	uc001ipg.2	-	6	745	c.710G>T	c.(709-711)AGA>ATA	p.R237I		NM_014241	NP_055056	B0YJ81	HACD1_HUMAN	protein tyrosine phosphatase-like, member A	237	Lumenal (Potential).				fatty acid biosynthetic process|multicellular organismal development|signal transduction	endoplasmic reticulum membrane|integral to membrane	lyase activity|protein tyrosine phosphatase activity			central_nervous_system(1)|skin(1)	2						GTTAGGAAGTCTTATTGAAAA	0.313			NA											23	77					7.41877e-09	9.45992e-09	0.012319	1	0
SLC39A12	221074	broad.mit.edu	37	10	18280171	18280171	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr10:18280171G>T	uc001ipo.2	+	8	1634	c.1361G>T	c.(1360-1362)GGC>GTC	p.G454V	SLC39A12_uc001ipn.2_Missense_Mutation_p.G454V|SLC39A12_uc001ipp.2_Missense_Mutation_p.G454V|SLC39A12_uc010qck.1_Missense_Mutation_p.G320V	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	454	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TTAATTGGAGGCATCCATGGA	0.353			NA											20	78					5.03518e-11	6.74155e-11	0.007413	1	0
NEBL	10529	broad.mit.edu	37	10	21101768	21101768	+	Silent	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr10:21101768G>A	uc001iqi.2	-	24	2845	c.2448C>T	c.(2446-2448)GTC>GTT	p.V816V	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Silent_p.V153V	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	816	Nebulin 23.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CAGCATCGCTGACCACCTGGG	0.512			NA											15	52					0	0	0.003163	0	0
SYT15	83849	broad.mit.edu	37	10	46968629	46968629	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr10:46968629G>A	uc001jea.2	-	3	460	c.307C>T	c.(307-309)CCC>TCC	p.P103S	SYT15_uc001jdz.2_Missense_Mutation_p.P103S|SYT15_uc001jeb.2_5'UTR|SYT15_uc010qfp.1_5'Flank	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	103	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						GCCGGGCAGGGGTCCCATGGG	0.682	Ovarian(57;1152 1428 19651 37745)		NA											5	53					0	0	0.014758	0	0
PCDH15	65217	broad.mit.edu	37	10	55566681	55566681	+	Silent	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr10:55566681G>T	uc010qhq.1	-	36	5102	c.4707C>A	c.(4705-4707)TCC>TCA	p.S1569S	PCDH15_uc010qhr.1_Silent_p.S1564S	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	422	Cadherin 4.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTCGAACAGGGGAAGCAACTT	0.458			NA								HNSCC(58;0.16)			46	151					3.77016e-25	5.75068e-25	0.013114	1	0
PCDH15	65217	broad.mit.edu	37	10	55943219	55943219	+	Silent	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr10:55943219C>T	uc001jju.1	-	13	1970	c.1575G>A	c.(1573-1575)GGG>GGA	p.G525G	PCDH15_uc010qhq.1_Silent_p.G530G|PCDH15_uc010qhr.1_Silent_p.G525G|PCDH15_uc010qhs.1_Silent_p.G537G|PCDH15_uc010qht.1_Silent_p.G532G|PCDH15_uc010qhu.1_Silent_p.G525G|PCDH15_uc001jjv.1_Silent_p.G503G|PCDH15_uc010qhv.1_Silent_p.G525G|PCDH15_uc010qhw.1_Silent_p.G488G|PCDH15_uc010qhx.1_Silent_p.G525G|PCDH15_uc010qhy.1_Silent_p.G530G|PCDH15_uc010qhz.1_Silent_p.G525G|PCDH15_uc010qia.1_Silent_p.G503G|PCDH15_uc010qib.1_Silent_p.G503G|PCDH15_uc001jjw.2_Silent_p.G525G	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	525	Cadherin 5.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGACACTGTCCCCAGGTCTCA	0.363			NA								HNSCC(58;0.16)			18	72					0	0	0.008871	0	0
WAPAL	23063	broad.mit.edu	37	10	88227091	88227091	+	Missense_Mutation	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr10:88227091A>G	uc001kdo.2	-	9	2757	c.2315T>C	c.(2314-2316)ATC>ACC	p.I772T	WAPAL_uc009xsv.2_Missense_Mutation_p.I86T|WAPAL_uc001kdn.2_Missense_Mutation_p.I809T|WAPAL_uc009xsw.2_Missense_Mutation_p.I766T	NM_015045	NP_055860	Q7Z5K2	WAPL_HUMAN	wings apart-like homolog	772	Potential.|WAPL.				cell division|interspecies interaction between organisms|mitosis|negative regulation of chromatin binding|negative regulation of DNA replication|negative regulation of sister chromatid cohesion|protein localization to chromatin|regulation of cohesin localization to chromatin	chromatin|cohesin complex|cytoplasm	protein binding			ovary(1)	1						GAGCCTTCGGATTTTTTCTTT	0.368			NA											18	82					0	0	0.010504	0	0
BLNK	29760	broad.mit.edu	37	10	97960807	97960807	+	Silent	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr10:97960807T>A	uc001kls.3	-	14	1120	c.942A>T	c.(940-942)ACA>ACT	p.T314T	BLNK_uc001kme.3_Silent_p.T209T|BLNK_uc001klt.3_Silent_p.T205T|BLNK_uc009xvc.2_RNA|BLNK_uc001klu.3_Silent_p.T232T|BLNK_uc001klv.3_Silent_p.T209T|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Silent_p.T291T|BLNK_uc001kly.3_Silent_p.T314T|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Silent_p.T291T|BLNK_uc001kmb.3_Silent_p.T110T|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_Silent_p.T232T|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	314					B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		TTCCCCCTTCTGTAAATCCTG	0.413			NA											35	90					0	0	0.019004	0	0
STK32C	282974	broad.mit.edu	37	10	134040457	134040457	+	Silent	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr10:134040457G>A	uc001lle.1	-	4	626	c.486C>T	c.(484-486)GAC>GAT	p.D162D	STK32C_uc001lld.1_Silent_p.D45D|STK32C_uc010quu.1_Silent_p.D175D|STK32C_uc009ybc.1_Silent_p.D45D|STK32C_uc009ybd.1_Silent_p.D45D|STK32C_uc001llb.2_Translation_Start_Site|STK32C_uc001llc.1_RNA	NM_173575	NP_775846	Q86UX6	ST32C_HUMAN	serine/threonine kinase 32C	162	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|breast(1)	5		all_cancers(35;2.72e-11)|all_epithelial(44;2.33e-08)|Lung NSC(174;0.000855)|all_lung(145;0.00146)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.112)|Melanoma(40;0.124)|Glioma(114;0.203)		Epithelial(32;3.99e-05)|all cancers(32;5.58e-05)|OV - Ovarian serous cystadenocarcinoma(35;9.96e-05)|BRCA - Breast invasive adenocarcinoma(275;0.222)		TGTCCTCCTCGTCCTGGAAGG	0.622			NA											5	34					0	0	0.014758	0	0
IFITM3	10410	broad.mit.edu	37	11	319883	319883	+	Silent	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:319883A>T	uc001lpa.2	-	2	458	c.357T>A	c.(355-357)ATT>ATA	p.I119I	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	119	Helical; (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane				central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGATGAGCAGAATGGTCATGA	0.582			NA											7	58					0	0	0.00308	0	0
CARS	833	broad.mit.edu	37	11	3059360	3059360	+	Missense_Mutation	SNP	C	C	T	rs12796489	byFrequency	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:3059360C>T	uc001lxh.2	-	6	546	c.472G>A	c.(472-474)GCA>ACA	p.A158T	CARS_uc001lxe.2_Missense_Mutation_p.A148T|CARS_uc001lxf.2_Missense_Mutation_p.A241T|CARS_uc001lxg.2_Missense_Mutation_p.A158T|CARS_uc010qxo.1_Missense_Mutation_p.A241T|CARS_uc010qxp.1_Missense_Mutation_p.A171T|uc001lxi.1_Intron	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	158					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	AGCTGCACTGCGTGCTGAATC	0.483	Ovarian(61;932 1157 5961 20446 52152)		NA	T	ALK	ALCL						OREG0020690	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	83					0	0	0.014323	0	0
OR51S1	119692	broad.mit.edu	37	11	4869601	4869601	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:4869601G>T	uc010qyo.1	-	1	838	c.838C>A	c.(838-840)CAT>AAT	p.H280N		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	280	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGAAGAGTATGGGTATGCTGA	0.443			NA											18	77					2.35188e-11	3.1665e-11	0.006122	1	0
OR51A4	401666	broad.mit.edu	37	11	4967862	4967862	+	Missense_Mutation	SNP	G	G	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:4967862G>C	uc010qys.1	-	1	469	c.469C>G	c.(469-471)CTG>GTG	p.L157V		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGAAGAACCAGGAGCATGCTC	0.433			NA											8	387					0	0	0.00499	0	0
OR51A2	401667	broad.mit.edu	37	11	4976475	4976475	+	Missense_Mutation	SNP	G	G	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:4976475G>C	uc010qyt.1	-	1	469	c.469C>G	c.(469-471)CTG>GTG	p.L157V		NM_001004748	NP_001004748	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGAAGAACCAGGAGCATGCTC	0.433			NA											39	51					0	0	0.021022	0	0
CCKBR	887	broad.mit.edu	37	11	6291371	6291371	+	Missense_Mutation	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:6291371T>A	uc001mcp.2	+	3	650	c.457T>A	c.(457-459)TAC>AAC	p.Y153N	CCKBR_uc001mcq.2_Missense_Mutation_p.Y81N|CCKBR_uc001mcr.2_Missense_Mutation_p.Y153N|CCKBR_uc001mcs.2_Missense_Mutation_p.Y153N	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	153	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	ACTGGAGCGGTACAGCGCCAT	0.597			NA											9	40					0	0	0.006214	0	0
OR2AG2	338755	broad.mit.edu	37	11	6789736	6789736	+	Silent	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:6789736C>A	uc001meq.1	-	1	453	c.453G>T	c.(451-453)CTG>CTT	p.L151L		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TCAGGGATGCCAGGATCCAGG	0.512			NA											14	50					1.05317e-09	1.38696e-09	0.020292	1	0
SPON1	10418	broad.mit.edu	37	11	14287127	14287127	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:14287127G>A	uc001mle.2	+	17	2856	c.2318G>A	c.(2317-2319)GGA>GAA	p.G773E		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	773	TSP type-1 6.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		TGCGGAGGTGGAATTCAGGAA	0.338			NA											3	20					0	0	0.004672	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18195148	18195148	+	Silent	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:18195148C>G	uc001mnv.1	+	1	765	c.345C>G	c.(343-345)GCC>GCG	p.A115A		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	115	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TGCTGAGCGCCATCAGCACCG	0.577			NA											19	121					0	0	0.007413	0	0
SLC17A6	57084	broad.mit.edu	37	11	22380959	22380959	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:22380959G>T	uc001mqk.2	+	4	872	c.459G>T	c.(457-459)AGG>AGT	p.R153S		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	153	Helical; (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						TCTATTTCAGGGTTTTCGGAG	0.343			NA											9	47					5.4927e-09	7.04118e-09	0.004482	1	0
F2	2147	broad.mit.edu	37	11	46750358	46750358	+	Silent	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:46750358G>T	uc001ndf.3	+	11	1486	c.1443G>T	c.(1441-1443)GTG>GTT	p.V481V	F2_uc001ndg.3_RNA	NM_000506	NP_000497	P00734	THRB_HUMAN	coagulation factor II preproprotein	481	Peptidase S1.				activation of caspase activity|acute-phase response|blood coagulation, intrinsic pathway|cell surface receptor linked signaling pathway|cytosolic calcium ion homeostasis|fibrinolysis|leukocyte migration|negative regulation of astrocyte differentiation|negative regulation of fibrinolysis|negative regulation of platelet activation|negative regulation of proteolysis|peptidyl-glutamic acid carboxylation|platelet activation|positive regulation of collagen biosynthetic process|positive regulation of protein phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of release of sequestered calcium ion into cytosol|post-translational protein modification|proteolysis|STAT protein import into nucleus|tyrosine phosphorylation of STAT protein	cytosol|endoplasmic reticulum lumen|extracellular space|Golgi lumen|plasma membrane|soluble fraction	calcium ion binding|growth factor activity|serine-type endopeptidase activity|thrombospondin receptor activity			ovary(3)	3		all_lung(304;0.000414)|Lung NSC(402;0.0011)		BRCA - Breast invasive adenocarcinoma(625;0.146)	Antihemophilic Factor(DB00025)|Argatroban(DB00278)|Bivalirudin(DB00006)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)|Enoxaparin(DB01225)|Heparin(DB01109)|Lepirudin(DB00001)|Menadione(DB00170)|Proflavine(DB01123)|Simvastatin(DB00641)|Suramin(DB04786)|Warfarin(DB00682)|Ximelagatran(DB04898)	TTCACCCTGTGTGTCTGCCCG	0.443	Esophageal Squamous(147;1147 1808 2148 38609 51144)		NA											21	68					7.33628e-21	1.09138e-20	0.014323	1	0
OR8H2	390151	broad.mit.edu	37	11	55873302	55873303	+	Missense_Mutation	DNP	CC	CC	AA	rs143759988	by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:55873302_55873303CC>AA	uc010riy.1	+	1	784_785	c.784_785CC>AA	c.(784-786)CCA>AAA	p.P262K		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TTATTTAAAACCAAGAAAGTCT	0.361			NA								HNSCC(53;0.14)			7	96					0	0	0.004672	0	0
OR5J2	282775	broad.mit.edu	37	11	55944199	55944199	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:55944199G>T	uc010rjb.1	+	1	106	c.106G>T	c.(106-108)GCC>TCC	p.A36S		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					GGTGATTTACGCCATTACCTT	0.393			NA											26	131					3.01185e-09	3.90245e-09	0.021523	1	0
OR5AR1	219493	broad.mit.edu	37	11	56431534	56431534	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:56431534G>T	uc010rjm.1	+	1	373	c.373G>T	c.(373-375)GCC>TCC	p.A125S		NM_001004730	NP_001004730	Q8NGP9	O5AR1_HUMAN	olfactory receptor, family 5, subfamily AR,	125	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCGTTTTGTGGCCATTTGTCG	0.512			NA											20	176					4.16121e-05	4.8447e-05	0.016522	1	0
STX3	6809	broad.mit.edu	37	11	59559626	59559626	+	Missense_Mutation	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:59559626A>G	uc001nog.2	+	6	594	c.404A>G	c.(403-405)AAT>AGT	p.N135S	STX3_uc010rkx.1_Missense_Mutation_p.N135S|STX3_uc010rky.1_Missense_Mutation_p.N38S|STX3_uc009ymt.1_Missense_Mutation_p.N38S	NM_004177	NP_004168	Q13277	STX3_HUMAN	syntaxin 3	135	Cytoplasmic (Potential).				cellular response to oxidative stress|intracellular protein transport|neuron projection development|neurotransmitter transport	apical plasma membrane|azurophil granule|cell-cell junction|growth cone|integral to membrane|plasma membrane enriched fraction|SNARE complex|specific granule	arachidonic acid binding|SNAP receptor activity			ovary(2)	2						ACCAAATACAATGAAGCTCAA	0.493			NA											8	27					0	0	0.006214	0	0
AHNAK	79026	broad.mit.edu	37	11	62287869	62287869	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:62287869C>A	uc001ntl.2	-	5	14320	c.14020G>T	c.(14020-14022)GTG>TTG	p.V4674L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4674					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GGCAGGTTCACATCCACATCT	0.512			NA											78	380					7.14593e-30	1.1256e-29	0.01441	1	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249653	71249653	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:71249653G>T	uc001oqr.1	+	1	583	c.552G>T	c.(550-552)CAG>CAT	p.Q184H		NM_021046	NP_066384	O75690	KRA58_HUMAN	keratin associated protein 5-8	184						extracellular region|keratin filament	structural constituent of epidermis				0						TTTGCTGCCAGTGCAAGATCT	0.562			NA											37	142					1.42033e-22	2.13938e-22	0.019004	1	0
FZD4	8322	broad.mit.edu	37	11	86662265	86662265	+	Silent	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:86662265C>T	uc001pce.2	-	2	1839	c.1533G>A	c.(1531-1533)TTG>TTA	p.L511L	PRSS23_uc001pcc.1_RNA	NM_012193	NP_036325	Q9ULV1	FZD4_HUMAN	frizzled 4 precursor	511	Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|negative regulation of cell-substrate adhesion|neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|progesterone secretion|regulation of vascular endothelial growth factor receptor signaling pathway|substrate adhesion-dependent cell spreading|vasculogenesis|Wnt receptor signaling pathway, calcium modulating pathway	cell projection|cell surface|cytoplasm	cytokine binding|G-protein coupled receptor activity|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|Wnt receptor activity|Wnt-protein binding			large_intestine(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CAGAATTCACCAATCTGTTGG	0.453			NA											13	85					0	0	0.013537	0	0
CASP1	834	broad.mit.edu	37	11	104901057	104901057	+	Silent	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr11:104901057C>A	uc010rve.1	-	5	644	c.627G>T	c.(625-627)TCG>TCT	p.S209S	CASP1_uc001pig.2_Silent_p.S116S|CASP1_uc001pik.2_Silent_p.S172S|CASP1_uc010rvf.1_Silent_p.S116S|CASP1_uc010rvg.1_Silent_p.S188S|CASP1_uc010rvh.1_Silent_p.S116S|CASP1_uc010rvi.1_Intron|CASP1_uc001pim.3_Silent_p.S209S|CASP1_uc009yxi.2_Silent_p.S188S|CASP1_uc010rvj.1_Silent_p.S209S|CASP1_uc009yxj.2_Silent_p.S54S|CASP1_uc010rvk.1_Silent_p.S170S	NM_033292	NP_150634	P29466	CASP1_HUMAN	caspase 1 isoform alpha precursor	209					cellular response to mechanical stimulus|cellular response to organic substance|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis|signal transduction	cytosol	caspase activator activity|cysteine-type endopeptidase activity|protein binding			ovary(2)	2		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000525)|Epithelial(105;0.0128)|all cancers(92;0.0482)	Minocycline(DB01017)|Penicillamine(DB00859)	TAGAACTTACCGAAGCAGTGA	0.378	NSCLC(41;1246 1743 4934)		NA											17	78					3.45872e-05	4.08603e-05	0.004007	1	0
LOC642846	642846	broad.mit.edu	37	12	9451455	9451455	+	Missense_Mutation	SNP	G	G	A	rs116975713	by1000genomes	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr12:9451455G>A	uc010sgq.1	+	8	885	c.794G>A	c.(793-795)AGC>AAC	p.S265N	LOC642846_uc010sgp.1_RNA|LOC642846_uc009zgn.1_Missense_Mutation_p.S115N|LOC642846_uc001qvo.2_Missense_Mutation_p.S115N|LOC642846_uc001qvp.2_5'Flank					SubName: Full=cDNA FLJ60032, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-);												0						ATGCAGAGAAGCAGGCACGGT	0.527			NA											11	50					0	0	0.004007	0	0
DUSP16	80824	broad.mit.edu	37	12	12630062	12630062	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr12:12630062G>A	uc001rao.1	-	7	2335	c.1703C>T	c.(1702-1704)TCT>TTT	p.S568F	DUSP16_uc001ram.1_5'Flank|DUSP16_uc001ran.1_Missense_Mutation_p.S420F	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	568					inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		GGCTGAGGCAGAGTAGAAGTG	0.592	Ovarian(158;443 1896 15437 36069 46477)		NA											36	162					0	0	0.019004	0	0
CDKN1B	1027	broad.mit.edu	37	12	12870966	12870966	+	Nonsense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr12:12870966C>T	uc001rat.2	+	1	665	c.193C>T	c.(193-195)CAG>TAG	p.Q65*		NM_004064	NP_004055	P46527	CDN1B_HUMAN	cyclin-dependent kinase inhibitor 1B	65					autophagic cell death|cell cycle arrest|cellular response to lithium ion|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of protein catabolic process|S phase of mitotic cell cycle	cytosol|endosome|nucleoplasm	cyclin-dependent protein kinase inhibitor activity|protein phosphatase binding|transforming growth factor beta receptor, cytoplasmic mediator activity			ovary(1)|lung(1)	2		Prostate(47;0.0322)|all_epithelial(100;0.159)		BRCA - Breast invasive adenocarcinoma(232;0.0336)		TTTCGATTTTCAGAATCACAA	0.582			NA							Multiple_Endocrine_Neoplasia_type_1|Multiple_Endocrine_Neoplasia_type_4				57	85					0	0	0.01441	0	0
SOX5	6660	broad.mit.edu	37	12	23687401	23687401	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr12:23687401C>T	uc001rfw.2	-	15	2146	c.2044G>A	c.(2044-2046)GCC>ACC	p.A682T	SOX5_uc001rfx.2_Missense_Mutation_p.A669T|SOX5_uc001rfy.2_Missense_Mutation_p.A561T|SOX5_uc001rfv.2_Missense_Mutation_p.A296T|SOX5_uc010siv.1_Missense_Mutation_p.A669T	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	682					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						CCAGCCATGGCGATGGCTCCA	0.552			NA											9	69					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	12	31301005	31301005	+	Nonsense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr12:31301005G>A	uc010sjy.1	-	11	1255	c.1255C>T	c.(1255-1257)CAG>TAG	p.Q419*						RecName: Full=Ovostatin homolog 1; Flags: Precursor;												NA						TCCAAGTACTGAGGCGTCAAC	0.458			NA											10	404					0	0	0.006214	0	0
RDH16	8608	broad.mit.edu	37	12	57346753	57346753	+	Silent	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr12:57346753C>A	uc001smi.3	-	3	766	c.594G>T	c.(592-594)GGG>GGT	p.G198G	RDH16_uc009zpa.2_Silent_p.G53G	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	198	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						CCACCTTCACCCCAAAGTAGG	0.458	GBM(179;741 2921 43105 45298)		NA											73	106					3.82274e-22	5.72224e-22	0.01441	1	0
CPSF6	11052	broad.mit.edu	37	12	69652445	69652445	+	Missense_Mutation	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr12:69652445A>G	uc001sut.3	+	6	880	c.770A>G	c.(769-771)CAG>CGG	p.Q257R	CPSF6_uc001suu.3_Missense_Mutation_p.Q294R|CPSF6_uc010stk.1_5'UTR	NM_007007	NP_008938	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6,	257	Pro-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding				0	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			CCTCCTGGTCAGGTTCTGCCT	0.567			NA											59	64					0	0	0.01441	0	0
MYBPC1	4604	broad.mit.edu	37	12	102036302	102036302	+	Silent	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr12:102036302C>G	uc001tii.2	+	9	798	c.696C>G	c.(694-696)ACC>ACG	p.T232T	MYBPC1_uc001tif.1_Silent_p.T245T|MYBPC1_uc001tig.2_Silent_p.T257T|MYBPC1_uc010svq.1_Silent_p.T219T|MYBPC1_uc001tih.2_Silent_p.T257T|MYBPC1_uc001tij.2_Silent_p.T232T|MYBPC1_uc010svr.1_Silent_p.T232T|MYBPC1_uc010svs.1_Silent_p.T232T|MYBPC1_uc010svt.1_Silent_p.T220T|MYBPC1_uc010svu.1_Silent_p.T213T|MYBPC1_uc001tik.2_Silent_p.T206T	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	232				GITDLR -> ESPTCS (in Ref. 1; CAA46987).	cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						ATGGAATCACCGACCTGCGCG	0.617			NA											9	62					0	0	0.004482	0	0
ATXN2	6311	broad.mit.edu	37	12	111951340	111951340	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr12:111951340G>A	uc001tsj.2	-	11	2021	c.1859C>T	c.(1858-1860)CCT>CTT	p.P620L	ATXN2_uc001tsh.2_Missense_Mutation_p.P355L|ATXN2_uc001tsi.2_Missense_Mutation_p.P331L|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsm.1_Missense_Mutation_p.P355L	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	620	Pro-rich.				cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						CATCCTTGGAGGCCCTAAGGA	0.383			NA											9	38					0	0	0.008291	0	0
POTEG	404785	broad.mit.edu	37	14	19553775	19553775	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:19553775G>T	uc001vuz.1	+	1	411	c.359G>T	c.(358-360)TGG>TTG	p.W120L	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	120										ovary(1)	1						GTGGGCCCTTGGGGAGACTAC	0.602			NA											8	523					0.00307968	0.00337365	0.00308	1	0
OR4Q3	441669	broad.mit.edu	37	14	20215981	20215981	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:20215981G>T	uc010tkt.1	+	1	395	c.395G>T	c.(394-396)CGC>CTC	p.R132L		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	132	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AACCCTTTGCGCTACCTTACA	0.493			NA											8	108					0.00621372	0.00668529	0.006214	1	0
CHD8	57680	broad.mit.edu	37	14	21876961	21876961	+	Nonsense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:21876961C>T	uc001was.1	-	12	1645	c.1551G>A	c.(1549-1551)TGG>TGA	p.W517*	CHD8_uc001war.1_Nonsense_Mutation_p.W413*|CHD8_uc001wav.1_5'UTR	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	796					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		CCAATTTCTTCCAGGCACTTG	0.378			NA											3	13					0	0	0.004672	0	0
FSCB	84075	broad.mit.edu	37	14	44975251	44975251	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:44975251C>A	uc001wvn.2	-	1	1249	c.940G>T	c.(940-942)GTT>TTT	p.V314F		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	314						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		TGAACTTTAACAGAATTCTCC	0.522			NA											13	66					5.50884e-06	6.57242e-06	0.013537	1	0
ERO1L	30001	broad.mit.edu	37	14	53133133	53133133	+	Missense_Mutation	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:53133133A>T	uc001wzv.2	-	7	815	c.589T>A	c.(589-591)TGG>AGG	p.W197R	ERO1L_uc001wzw.2_RNA|ERO1L_uc010aof.2_RNA	NM_014584	NP_055399	Q96HE7	ERO1A_HUMAN	ERO1-like precursor	197					chaperone mediated protein folding requiring cofactor|electron transport chain|protein thiol-disulfide exchange|response to temperature stimulus|transport	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome	disulfide oxidoreductase activity|flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor				0	Breast(41;0.226)					CATATTTTCCAAGCATCTGGT	0.338			NA											4	21					0	0	0.009096	0	0
RTN1	6252	broad.mit.edu	37	14	60193922	60193922	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:60193922C>T	uc001xen.1	-	3	1689	c.1480G>A	c.(1480-1482)GCC>ACC	p.A494T	RTN1_uc001xem.1_Missense_Mutation_p.A74T	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	494					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		GCATCCAGGGCGCTGGGCTTC	0.711			NA											3	9					0	0	0.004672	0	0
RAB15	376267	broad.mit.edu	37	14	65417042	65417042	+	Splice_Site	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:65417042C>A	uc001xhz.2	-	5	626	c.545_splice	c.e5+1	p.S182_splice	FNTB_uc010tsl.1_Intron|FNTB_uc010tsm.1_Intron|RAB15_uc010aqk.2_Splice_Site	NM_198686	NP_941959	P59190	RAB15_HUMAN	RAB15, member RAS onocogene family						protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)	1				all cancers(60;0.00136)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.0102)		CCTCCACTTACCTGCTGCCCT	0.592			NA											58	215					2.44918e-20	3.62119e-20	0.01441	1	0
FAM71D	161142	broad.mit.edu	37	14	67671600	67671600	+	Nonsense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:67671600G>T	uc001xja.1	+	5	960	c.706G>T	c.(706-708)GAA>TAA	p.E236*	FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	236										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		AGATTTCCCAGAATTCACAGA	0.448			NA											23	37					1.50039e-11	2.03143e-11	0.012319	1	0
YLPM1	56252	broad.mit.edu	37	14	75279475	75279475	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:75279475G>A	uc001xqj.3	+	11	5616	c.5492G>A	c.(5491-5493)AGA>AAA	p.R1831K	YLPM1_uc001xql.3_RNA|YLPM1_uc001xqm.1_Missense_Mutation_p.R314K	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1636					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CGGGAGAGCAGACCTGAGAGA	0.458			NA											7	21					0	0	0.006214	0	0
C15orf2	23742	broad.mit.edu	37	15	24921231	24921232	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:24921231_24921232CC>AA	uc001ywo.2	+	1	691_692	c.217_218CC>AA	c.(217-219)CCT>AAT	p.P73N		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	73					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GAGGCCGTGTCCTCTCCCTCGG	0.713			NA											12	41					0	0	0.004672	0	0
C15orf2	23742	broad.mit.edu	37	15	24924229	24924229	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:24924229G>A	uc001ywo.2	+	1	3689	c.3215G>A	c.(3214-3216)GGG>GAG	p.G1072E		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	1072					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		GCACCACAAGGGGCTAGCAAC	0.542			NA											15	74					0	0	0.003163	0	0
OTUD7A	161725	broad.mit.edu	37	15	31819480	31819480	+	Silent	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:31819480C>A	uc001zfq.2	-	5	777	c.684G>T	c.(682-684)GTG>GTT	p.V228V	OTUD7A_uc001zfr.2_Silent_p.V228V	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	228	OTU.|Catalytic (By similarity).|TRAF-binding (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		CTTTCCGTAACACCAGGTCCC	0.567			NA											33	122					1.61788e-16	2.33478e-16	0.012213	1	0
RYR3	6263	broad.mit.edu	37	15	33920772	33920772	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:33920772G>T	uc001zhi.2	+	21	2745	c.2675G>T	c.(2674-2676)GGC>GTC	p.G892V	RYR3_uc010bar.2_Missense_Mutation_p.G892V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	892	4 X approximate repeats.|1.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGGACTTTCGGCAAGGTATGT	0.473			NA											14	50					0.00185496	0.00207928	0.016723	1	0
CYP19A1	1588	broad.mit.edu	37	15	51503033	51503033	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:51503033C>T	uc001zyz.3	-	11	1735	c.1484G>A	c.(1483-1485)AGA>AAA	p.R495K	CYP19A1_uc001zza.3_Missense_Mutation_p.R495K	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	495					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	GTCTGAGTTTCTTGGGGTAAA	0.448	Melanoma(142;1016 1807 39614 48966 51721)		NA											41	133					0	0	0.010771	0	0
RSL24D1	51187	broad.mit.edu	37	15	55489023	55489023	+	Silent	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:55489023G>A	uc002acn.2	-	1	209	c.66C>T	c.(64-66)GTC>GTT	p.V22V		NM_016304	NP_057388	Q9UHA3	RLP24_HUMAN	ribosomal protein L24-like	22					ribosome biogenesis|translation	nucleolus|ribosome	structural constituent of ribosome			ovary(1)	1						AATCGTTGCGGACGAACATCA	0.582			NA									OREG0023135	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	39					0	0	0.006122	0	0
CCPG1	9236	broad.mit.edu	37	15	55653056	55653056	+	Silent	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:55653056T>A	uc002acv.1	-	8	1080	c.915A>T	c.(913-915)ACA>ACT	p.T305T	CCPG1_uc002acy.2_Silent_p.T305T|CCPG1_uc002acu.1_Silent_p.T161T|CCPG1_uc002acw.1_Silent_p.T30T|CCPG1_uc002acx.2_Silent_p.T305T|CCPG1_uc010bfk.1_Silent_p.T305T|CCPG1_uc002acz.1_Silent_p.T305T	NM_020739	NP_065790	Q9ULG6	CCPG1_HUMAN	cell cycle progression 1 isoform 2	305	Lumenal (Potential).|Interaction with MCF2L and SRC (By similarity).				cell cycle	integral to membrane				ovary(1)	1				all cancers(107;0.0354)		ACTGATTTTCTGTAGCAAGGT	0.343			NA											23	51					0	0	0.012319	0	0
SLC24A1	9187	broad.mit.edu	37	15	65918051	65918051	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:65918051C>T	uc010ujf.1	+	2	1920	c.1633C>T	c.(1633-1635)CTC>TTC	p.L545F	SLC24A1_uc010ujd.1_Missense_Mutation_p.L545F|SLC24A1_uc010uje.1_Missense_Mutation_p.L545F|SLC24A1_uc010ujg.1_Missense_Mutation_p.L545F|SLC24A1_uc010ujh.1_Missense_Mutation_p.L545F	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	545	Cytoplasmic (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						CACTTGTTCCCTCTTCTCCCG	0.502			NA											48	156					0	0	0.01441	0	0
ANPEP	290	broad.mit.edu	37	15	90347501	90347501	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:90347501G>A	uc002bop.3	-	6	1454	c.1162C>T	c.(1162-1164)CAT>TAT	p.H388Y		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	388	Extracellular.|Metalloprotease.	Zinc; catalytic (By similarity).			angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	GCCAGCTCATGAGCAATCACA	0.642	NSCLC(30;827 977 2459 19669 26125)		NA											32	90					0	0	0.012213	0	0
C16orf88	400506	broad.mit.edu	37	16	19725912	19725912	+	Missense_Mutation	SNP	T	T	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr16:19725912T>C	uc002dgq.2	-	2	461	c.446A>G	c.(445-447)AAA>AGA	p.K149R	IQCK_uc002dgr.2_5'Flank|IQCK_uc002dgs.2_5'Flank	NM_001012991	NP_001013009	Q1ED39	CP088_HUMAN	hypothetical protein LOC400506	149	Lys-rich.					nucleolus					0						CTTGTGTTTTTTGAGCTTCTT	0.557			NA											21	53					0	0	0.012319	0	0
DNAH3	55567	broad.mit.edu	37	16	21156636	21156636	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr16:21156636C>T	uc010vbe.1	-	3	314	c.314G>A	c.(313-315)GGA>GAA	p.G105E	DNAH3_uc002die.2_Missense_Mutation_p.G76E	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	105	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATCACTGGGTCCACGGTGGTG	0.542			NA											14	50					0	0	0.020292	0	0
PRKCB	5579	broad.mit.edu	37	16	23999883	23999883	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr16:23999883C>A	uc002dmd.2	+	3	457	c.260C>A	c.(259-261)CCT>CAT	p.P87H	PRKCB_uc002dme.2_Missense_Mutation_p.P87H	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	87					apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	TTCTCCTGCCCTGGCGCTGAC	0.413			NA											30	94					3.90053e-15	5.49723e-15	0.012213	1	0
ARMC5	79798	broad.mit.edu	37	16	31476170	31476170	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr16:31476170G>A	uc002ecc.2	+	4	2355	c.1826G>A	c.(1825-1827)CGT>CAT	p.R609H	ARMC5_uc010vfn.1_Missense_Mutation_p.R704H|ARMC5_uc010vfo.1_Missense_Mutation_p.R641H|ARMC5_uc002eca.3_Missense_Mutation_p.R609H|ARMC5_uc010vfp.1_Missense_Mutation_p.R417H|ARMC5_uc002ecb.2_Missense_Mutation_p.R609H	NM_001105247	NP_001098717	Q96C12	ARMC5_HUMAN	armadillo repeat containing 5 isoform a	609							binding			pancreas(1)	1						CCGGCACCACGTGCCCGGCCC	0.701			NA											5	9					0	0	0.014758	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76350353	76350353	+	Silent	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr16:76350353C>T	uc002feu.1	+	4	514	c.129C>T	c.(127-129)TCC>TCT	p.S43S	CNTNAP4_uc002fev.1_5'UTR|CNTNAP4_uc010chb.1_Silent_p.S18S|CNTNAP4_uc002fex.1_Silent_p.S46S|CNTNAP4_uc002few.2_Silent_p.S18S	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	43	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CTCAGGCATCCTTCAGCAGTT	0.502			NA											10	40					0	0	0.006214	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87451247	87451247	+	Missense_Mutation	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr16:87451247T>A	uc002fjz.1	-	8	818	c.791A>T	c.(790-792)CAT>CTT	p.H264L	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_Missense_Mutation_p.H40L	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	264					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		GCTGCCCGCATGGGAGCAGTG	0.692			NA											30	151					0	0	0.007291	0	0
ZNF18	7566	broad.mit.edu	37	17	11895767	11895767	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr17:11895767C>A	uc002gng.1	-	4	985	c.380G>T	c.(379-381)TGG>TTG	p.W127L	ZNF18_uc002gnh.1_Missense_Mutation_p.W127L|ZNF18_uc002gni.1_Missense_Mutation_p.W127L	NM_144680	NP_653281	P17022	ZNF18_HUMAN	zinc finger protein 18	127					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(1)	1				Colorectal(4;3.33e-05)|COAD - Colon adenocarcinoma(4;0.000494)|READ - Rectum adenocarcinoma(10;0.233)		TACCCATTGCCACAGTCTCTG	0.483			NA											32	43					1.08312e-15	1.53548e-15	0.009535	1	0
MAPK7	5598	broad.mit.edu	37	17	19286510	19286510	+	Missense_Mutation	SNP	T	T	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr17:19286510T>G	uc002gvn.2	+	7	2803	c.2417T>G	c.(2416-2418)CTG>CGG	p.L806R	MAPK7_uc002gvo.2_Missense_Mutation_p.L667R|MAPK7_uc002gvq.2_Missense_Mutation_p.L806R|MAPK7_uc002gvp.2_Missense_Mutation_p.L806R|uc010vyt.1_5'Flank	NM_139033	NP_620602	Q13164	MK07_HUMAN	mitogen-activated protein kinase 7 isoform 1	806	May not be required for kinase activity; required to stimulate MEF2C activity (By similarity).				cell cycle|cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					TCCCCAATGCTGCTGGCTGAC	0.597			NA											3	63					0	0	0.004672	0	0
NF1	4763	broad.mit.edu	37	17	29554590	29554590	+	Missense_Mutation	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr17:29554590T>A	uc002hgg.2	+	20	2708	c.2375T>A	c.(2374-2376)CTT>CAT	p.L792H	NF1_uc002hgh.2_Missense_Mutation_p.L792H|NF1_uc010csn.1_Missense_Mutation_p.L652H|NF1_uc002hgi.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	792					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AAGCTAATCCTTAACTATCCA	0.358			NA	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			29	25					0	0	0.007291	0	0
MTMR4	9110	broad.mit.edu	37	17	56573321	56573321	+	Missense_Mutation	SNP	T	T	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr17:56573321T>G	uc002iwj.2	-	16	2292	c.2182A>C	c.(2182-2184)ACT>CCT	p.T728P		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	728						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGTCCCTTAGTCTCTTCTAGG	0.493			NA											5	356					0	0	0.001984	0	0
MRC2	9902	broad.mit.edu	37	17	60759205	60759205	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr17:60759205G>T	uc002jad.2	+	19	3112	c.2710G>T	c.(2710-2712)GAT>TAT	p.D904Y	MRC2_uc002jae.2_5'UTR|MRC2_uc002jaf.2_5'UTR	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	904	Extracellular (Potential).|C-type lectin 5.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CAGATGGACAGATGGTTCCAT	0.597			NA											8	17					0.00307968	0.00337365	0.00308	1	0
CCDC57	284001	broad.mit.edu	37	17	80151979	80151979	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr17:80151979C>T	uc002kdz.1	-	6	1010	c.655G>A	c.(655-657)GAA>AAA	p.E219K	CCDC57_uc002kdx.1_Missense_Mutation_p.E219K	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	219	Potential.									ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			GCCCCGGCTTCCTTCAGAGCC	0.532			NA											55	59					0	0	0.01441	0	0
DLGAP1	9229	broad.mit.edu	37	18	3502639	3502639	+	Missense_Mutation	SNP	G	G	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr18:3502639G>C	uc002kmf.2	-	9	2643	c.2576C>G	c.(2575-2577)CCT>CGT	p.P859R	DLGAP1_uc010wyz.1_Missense_Mutation_p.P859R|DLGAP1_uc002kme.1_Missense_Mutation_p.P557R|DLGAP1_uc010dkn.2_Missense_Mutation_p.P567R|DLGAP1_uc010wyw.1_Missense_Mutation_p.P565R|DLGAP1_uc010wyx.1_Missense_Mutation_p.P581R|DLGAP1_uc010wyy.1_Missense_Mutation_p.P543R|DLGAP1_uc002kmg.2_Missense_Mutation_p.P557R	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	859					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				ATGAGCATTAGGATTCTGCAC	0.388			NA											15	56					0	0	0.003163	0	0
MC2R	4158	broad.mit.edu	37	18	13884810	13884810	+	Silent	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr18:13884810C>T	uc002ksp.1	-	2	885	c.708G>A	c.(706-708)GTG>GTA	p.V236V		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	236	Helical; Name=6; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	GGACATGAAGCACAAAGGGGG	0.547	Colon(141;1584 1782 35999 48227 48692)		NA											10	41					0	0	0.006214	0	0
NPC1	4864	broad.mit.edu	37	18	21119878	21119878	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr18:21119878C>A	uc002kum.3	-	18	2966	c.2692G>T	c.(2692-2694)GAC>TAC	p.D898Y	NPC1_uc010xaz.1_Missense_Mutation_p.D631Y|NPC1_uc010xba.1_Missense_Mutation_p.D743Y	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	898					autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					GAAGTGTAGTCGTGCCCTTCC	0.522			NA											16	59					3.52763e-06	4.2508e-06	0.00499	1	0
SLC39A6	25800	broad.mit.edu	37	18	33694349	33694349	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr18:33694349C>A	uc010dmy.2	-	7	1844	c.1554G>T	c.(1552-1554)ATG>ATT	p.M518I	SLC39A6_uc002kzj.2_Missense_Mutation_p.M243I	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	518	Cytoplasmic (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						CATGAGCTATCATGACCTCTT	0.463			NA											16	90					1.33834e-09	1.75293e-09	0.007413	1	0
NARS	4677	broad.mit.edu	37	18	55269675	55269675	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr18:55269675G>A	uc002lgs.2	-	13	1655	c.1427C>T	c.(1426-1428)TCA>TTA	p.S476L	NARS_uc002lgt.2_Missense_Mutation_p.S475L|NARS_uc010xea.1_Missense_Mutation_p.S227L	NM_004539	NP_004530	O43776	SYNC_HUMAN	asparaginyl-tRNA synthetase	476					asparaginyl-tRNA aminoacylation	cytosol|soluble fraction	asparagine-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding				0		Colorectal(73;0.227)			L-Asparagine(DB00174)	GATACGCATTGAGCCTCCCAC	0.413			NA											7	37					0	0	0.00308	0	0
KIAA1468	57614	broad.mit.edu	37	18	59895607	59895607	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr18:59895607G>T	uc002lil.2	+	8	1439	c.1224G>T	c.(1222-1224)TTG>TTT	p.L408F	KIAA1468_uc002lik.1_Missense_Mutation_p.L408F|KIAA1468_uc010xel.1_Missense_Mutation_p.L408F|KIAA1468_uc002lim.2_Missense_Mutation_p.L52F	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	408							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				AGCCTCCTTTGGATCAGTTGC	0.418			NA											4	127					0.00116845	0.00132204	0.001168	1	0
SERPINB13	5275	broad.mit.edu	37	18	61264451	61264451	+	Nonsense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr18:61264451G>T	uc002ljc.2	+	8	1198	c.1030G>T	c.(1030-1032)GAG>TAG	p.E344*	SERPINB13_uc002ljd.2_Nonsense_Mutation_p.E208*|SERPINB13_uc010xep.1_Nonsense_Mutation_p.E353*|SERPINB13_uc010xeq.1_Nonsense_Mutation_p.E165*|SERPINB13_uc010xer.1_Nonsense_Mutation_p.E165*	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	344					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						GGAAGGCACCGAGGCTGCAGC	0.542			NA											9	47					1.12685e-05	1.33779e-05	0.004482	1	0
DSEL	92126	broad.mit.edu	37	18	65181026	65181026	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr18:65181026C>A	uc002lke.1	-	2	2074	c.850G>T	c.(850-852)GAT>TAT	p.D284Y		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	274						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				ACACCTTCATCCAAAGAACCA	0.378			NA											12	92					1.61879e-10	2.15541e-10	0.013537	1	0
CCDC102B	79839	broad.mit.edu	37	18	66504350	66504350	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr18:66504350G>T	uc002lkk.2	+	4	573	c.350G>T	c.(349-351)AGG>ATG	p.R117M	CCDC102B_uc002lki.2_Missense_Mutation_p.R117M|CCDC102B_uc002lkj.1_Missense_Mutation_p.R117M	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	117	Potential.									ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				AACAGTGCCAGGGAGGAAGGA	0.463			NA											9	57					0.000274275	0.000313272	0.004482	1	0
STK11	6794	broad.mit.edu	37	19	1218415	1218415	+	Splice_Site	SNP	G	G	T	rs112675807		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:1218415G>T	uc002lrl.1	+	2	1406	c.291_splice	c.e2-1	p.K97_splice		NM_000455	NP_000446	Q15831	STK11_HUMAN	serine/threonine protein kinase 11						anoikis|cell cycle arrest|energy reserve metabolic process|insulin receptor signaling pathway|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.0?(19)|p.?(3)		lung(174)|cervix(35)|skin(15)|large_intestine(12)|pancreas(6)|gastrointestinal_tract_(site_indeterminate)(5)|stomach(4)|ovary(4)|breast(2)|upper_aerodigestive_tract(1)|testis(1)|liver(1)|biliary_tract(1)|small_intestine(1)|urinary_tract(1)|oesophagus(1)|prostate(1)|kidney(1)	266		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Renal(1328;0.0183)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.00942)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCTGTCCCAGGGAAATTCAA	0.522			14	D|Mis|N|F|S		NSCLC|pancreatic	jejunal harmartoma|ovarian|testicular|pancreatic			Peutz-Jeghers_syndrome	TSP Lung(3;<1E-08)			45	69					9.58827e-17	1.40047e-16	0.01441	1	0
DOT1L	84444	broad.mit.edu	37	19	2191240	2191240	+	Splice_Site	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:2191240G>T	uc002lvb.3	+	5	529	c.493_splice	c.e5+1	p.G165_splice		NM_032482	NP_115871	Q8TEK3	DOT1L_HUMAN	DOT1-like, histone H3 methyltransferase							nucleus	DNA binding|histone-lysine N-methyltransferase activity|protein binding			pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGGGGAGCGGTGAGTGTCGC	0.607			NA											14	28					1.15088e-07	1.43711e-07	0.004007	1	0
ARRDC5	645432	broad.mit.edu	37	19	4891298	4891298	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:4891298G>T	uc002mbm.2	-	3	789	c.789C>A	c.(787-789)AAC>AAA	p.N263K		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	263					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		CCTTGGTGGTGTTGAAGCGGG	0.622			NA											27	48					8.24728e-16	1.18309e-15	0.004656	1	0
SMARCA4	6597	broad.mit.edu	37	19	11136141	11136141	+	Missense_Mutation	SNP	T	T	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:11136141T>C	uc002mqf.3	+	22	3409	c.3125T>C	c.(3124-3126)CTG>CCG	p.L1042P	SMARCA4_uc010dxp.2_Missense_Mutation_p.L1042P|SMARCA4_uc010dxo.2_Missense_Mutation_p.L1042P|SMARCA4_uc002mqg.1_Missense_Mutation_p.L1042P|SMARCA4_uc010dxq.2_Missense_Mutation_p.L1042P|SMARCA4_uc010dxr.2_Missense_Mutation_p.L1042P|SMARCA4_uc002mqj.3_Missense_Mutation_p.L1042P|SMARCA4_uc010dxs.2_Missense_Mutation_p.L1042P|SMARCA4_uc010dxt.1_Missense_Mutation_p.L262P|SMARCA4_uc002mqh.3_Missense_Mutation_p.L165P|SMARCA4_uc002mqi.1_Missense_Mutation_p.L245P	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	1042					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				ATCATGCAGCTGCGGAAGATC	0.632			NA	F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				19	27					0	0	0.008871	0	0
SIN3B	23309	broad.mit.edu	37	19	16942395	16942395	+	Silent	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:16942395C>T	uc002ney.1	+	3	332	c.318C>T	c.(316-318)CTC>CTT	p.L106L	SIN3B_uc002new.2_Silent_p.L106L|SIN3B_uc002nex.2_Silent_p.L38L|SIN3B_uc002nez.1_Silent_p.L106L	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	106	PAH 1.				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						TTCTTCCCCTCGGATATAGAA	0.488			NA											41	118					0	0	0.00623	0	0
MAST3	23031	broad.mit.edu	37	19	18235123	18235123	+	Missense_Mutation	SNP	G	G	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:18235123G>C	uc002nhz.3	+	9	805	c.805G>C	c.(805-807)GTC>CTC	p.V269L		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	269							ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						CGTCCAGCTTGTCCGGAAACT	0.602			NA											3	8					0	0	0.004672	0	0
GPI	2821	broad.mit.edu	37	19	34868453	34868453	+	Missense_Mutation	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:34868453A>G	uc002nvg.1	+	5	551	c.448A>G	c.(448-450)ACG>GCG	p.T150A	GPI_uc002nvf.2_Missense_Mutation_p.T189A|GPI_uc010xrv.1_Intron|GPI_uc010xrw.1_Intron|GPI_uc010edl.1_Missense_Mutation_p.T150A	NM_000175	NP_000166	P06744	G6PI_HUMAN	glucose phosphate isomerase	150					angiogenesis|gluconeogenesis|glycolysis|hemostasis|humoral immune response	cytosol|extracellular space|nucleus|plasma membrane	cytokine activity|glucose-6-phosphate isomerase activity|growth factor activity			ovary(1)|kidney(1)	2	Esophageal squamous(110;0.162)					CAAGACCATCACGGACGTCAT	0.607			NA											20	60					0	0	0.016522	0	0
ATP4A	495	broad.mit.edu	37	19	36053478	36053478	+	Silent	SNP	T	T	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:36053478T>C	uc002oal.1	-	4	308	c.279A>G	c.(277-279)CCA>CCG	p.P93P		NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	93	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	TGCCCCGTGGTGGCCGCAGTG	0.706			NA											5	16					0	0	0.014758	0	0
ZNF382	84911	broad.mit.edu	37	19	37117732	37117732	+	Silent	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:37117732C>T	uc002oek.2	+	5	1046	c.933C>T	c.(931-933)CTC>CTT	p.L311L	ZNF382_uc010efa.2_Silent_p.L262L|ZNF382_uc010efb.2_Silent_p.L310L|ZNF382_uc002oel.2_Silent_p.L310L	NM_032825	NP_116214	Q96SR6	ZN382_HUMAN	zinc finger protein 382	311	Required for transcriptional repression activity; probably mediates sequence- specific DNA-binding (By similarity).|C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.198)		COAD - Colon adenocarcinoma(19;0.0454)|Colorectal(19;0.065)			AGTCATACCTCATTGAACATC	0.423			NA											32	93					0	0	0.009535	0	0
ZFP30	22835	broad.mit.edu	37	19	38126075	38126075	+	Missense_Mutation	SNP	T	T	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:38126075T>C	uc002ogv.1	-	6	1883	c.1367A>G	c.(1366-1368)CAT>CGT	p.H456R	ZFP30_uc002ogw.1_Missense_Mutation_p.H456R|ZFP30_uc002ogx.1_Missense_Mutation_p.H456R|ZFP30_uc010xtt.1_Missense_Mutation_p.H455R	NM_014898	NP_055713	Q9Y2G7	ZFP30_HUMAN	zinc finger protein 30 homolog	456	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AATACTTTGATGTTGGGTAAG	0.373			NA											19	51					0	0	0.006122	0	0
FCGBP	8857	broad.mit.edu	37	19	40420130	40420130	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:40420130G>A	uc002omp.3	-	6	2872	c.2864C>T	c.(2863-2865)GCA>GTA	p.A955V		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	955	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCCATCTGCTGCTTGGAAGGG	0.552			NA											4	51					0	0	0.001168	0	0
ZNF780A	284323	broad.mit.edu	37	19	40581425	40581425	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:40581425C>A	uc002omy.2	-	6	1149	c.924G>T	c.(922-924)AAG>AAT	p.K308N	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.K308N|ZNF780A_uc010xvh.1_Missense_Mutation_p.K309N	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	308	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TCCCACATTCCTTACATACAA	0.388			NA											58	174					3.91957e-13	5.33682e-13	0.01441	1	0
CYP2B7P1	1556	broad.mit.edu	37	19	41442419	41442419	+	Silent	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:41442419C>T	uc010ehg.1	+	3	465	c.457C>T	c.(457-459)CTG>TTG	p.L153L	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Silent_p.L153L|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						GGCTCAGTGTCTGATAGAGGA	0.527			NA											5	17					0	0	0.014758	0	0
MARK4	57787	broad.mit.edu	37	19	45805827	45805827	+	Silent	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:45805827C>G	uc002pbb.1	+	17	2123	c.2118C>G	c.(2116-2118)CCC>CCG	p.P706P	MARK4_uc002pba.1_3'UTR			Q96L34	MARK4_HUMAN	RecName: Full=MAP/microtubule affinity-regulating kinase 4;          EC=2.7.11.1; AltName: Full=MAP/microtubule affinity-regulating kinase-like 1;	706	KA1.				microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			central_nervous_system(2)|large_intestine(1)	3		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CGGGCGGGCCCGAGCCCCTGT	0.741			NA											4	3					0	0	0.001168	0	0
ZC3H4	23211	broad.mit.edu	37	19	47585439	47585439	+	Splice_Site	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:47585439A>T	uc002pga.3	-	10	1368	c.1330_splice	c.e10+1	p.G444_splice	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4								nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		ACTAAAGGATATCGTGCATAT	0.463			NA											34	72					0	0	0.019004	0	0
GRIN2D	2906	broad.mit.edu	37	19	48922550	48922550	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:48922550G>T	uc002pjc.3	+	8	1883	c.1795G>T	c.(1795-1797)GTC>TTC	p.V599F	GRIN2D_uc010elx.2_5'UTR	NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	599	Helical; (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	TGTGGTCGCCGTCACTGTTTT	0.607			NA											21	43					1.40151e-16	2.03472e-16	0.010504	1	0
VN1R2	317701	broad.mit.edu	37	19	53762797	53762797	+	Missense_Mutation	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:53762797A>G	uc002qbi.2	+	1	1253	c.1169A>G	c.(1168-1170)CAT>CGT	p.H390R		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	390	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		CGATTCTTTCATGATTTCAGG	0.443			NA											32	67					0	0	0.010818	0	0
TPO	7173	broad.mit.edu	37	2	1499849	1499849	+	Missense_Mutation	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:1499849A>G	uc002qww.2	+	12	2186	c.2095A>G	c.(2095-2097)ACT>GCT	p.T699A	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Missense_Mutation_p.T642A|TPO_uc002qwr.2_Missense_Mutation_p.T699A|TPO_uc002qwx.2_Missense_Mutation_p.T642A|TPO_uc010yio.1_Missense_Mutation_p.T526A|TPO_uc010yip.1_Missense_Mutation_p.T699A|TPO_uc002qwy.1_Missense_Mutation_p.T39A|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	699	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CTGTGACAACACTGGCCTCAC	0.567			NA											4	31					0	0	0.014758	0	0
DNAJC5G	285126	broad.mit.edu	37	2	27500725	27500725	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:27500725G>A	uc002rjl.1	+	4	635	c.217G>A	c.(217-219)GAA>AAA	p.E73K	SLC30A3_uc010ylh.1_5'Flank|DNAJC5G_uc010yli.1_Intron|DNAJC5G_uc002rjm.1_Missense_Mutation_p.E73K	NM_173650	NP_775921	Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	73	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCAAGCAGCAGAAATATTCAA	0.473			NA											14	87					0	0	0.020292	0	0
GALNT14	79623	broad.mit.edu	37	2	31147108	31147108	+	Silent	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:31147108G>T	uc002rnr.2	-	13	1876	c.1257C>A	c.(1255-1257)ATC>ATA	p.I419I	GALNT14_uc002rnq.2_Silent_p.I399I|GALNT14_uc002rns.2_Silent_p.I424I|GALNT14_uc010ymr.1_Silent_p.I384I|GALNT14_uc010ezo.1_Silent_p.I386I	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	419	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					TGCCCTTCTGGATGGAGGACT	0.537			NA											30	138					3.17567e-06	3.84591e-06	0.008361	1	0
SULT6B1	391365	broad.mit.edu	37	2	37406711	37406711	+	Missense_Mutation	SNP	C	C	T	rs11569744	byFrequency	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:37406711C>T	uc002rpu.2	-	4	326	c.305G>A	c.(304-306)CGA>CAA	p.R102Q	SULT6B1_uc010yni.1_RNA	NM_001032377	NP_001027549	Q6IMI4	ST6B1_HUMAN	sulfotransferase family, cytosolic, 6B, member	140	PAPS (By similarity).					cytoplasm	sulfotransferase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_hematologic(82;0.248)				TTTAGGGTTTCGAAATATCAC	0.358			NA											33	65					0	0	0.012213	0	0
LRRTM1	347730	broad.mit.edu	37	2	80529683	80529683	+	Missense_Mutation	SNP	T	T	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:80529683T>C	uc002sok.1	-	2	1532	c.1262A>G	c.(1261-1263)AAC>AGC	p.N421S	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	421	Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						CTGCACGGCGTTCTCGGCGTG	0.662			NA								HNSCC(69;0.2)			12	28					0	0	0.010729	0	0
MAT2A	4144	broad.mit.edu	37	2	85768989	85768989	+	Missense_Mutation	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:85768989A>T	uc002spr.2	+	5	566	c.443A>T	c.(442-444)GAG>GTG	p.E148V	MAT2A_uc010ysr.1_Missense_Mutation_p.E148V|MAT2A_uc010fgk.2_Missense_Mutation_p.E122V|MAT2A_uc010fgl.2_Missense_Mutation_p.E85V|MAT2A_uc010fgm.1_3'UTR	NM_005911	NP_005902	P31153	METK2_HUMAN	methionine adenosyltransferase II, alpha	148					methylation|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0					L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	GAAACTGAGGAGTGTATGCCT	0.408			NA											20	134					0	0	0.014323	0	0
TTN	7273	broad.mit.edu	37	2	179433977	179433977	+	Missense_Mutation	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:179433977C>G	uc010zfg.1	-	275	69402	c.69178G>C	c.(69178-69180)GAT>CAT	p.D23060H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D16755H|TTN_uc010zfi.1_Missense_Mutation_p.D16688H|TTN_uc010zfj.1_Missense_Mutation_p.D16563H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23987							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATCCCCCATCCAACAAAGGA	0.398			NA											119	260					0	0	0.01441	0	0
TTN	7273	broad.mit.edu	37	2	179577492	179577492	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:179577492C>A	uc010zfg.1	-	91	23752	c.23528G>T	c.(23527-23529)GGA>GTA	p.G7843V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4504V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8770							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTATATTCTCCACTTTGTGA	0.408			NA											13	85					1.5842e-08	2.00943e-08	0.016723	1	0
DNAH7	56171	broad.mit.edu	37	2	196681573	196681573	+	Silent	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:196681573A>G	uc002utj.3	-	51	9641	c.9540T>C	c.(9538-9540)AAT>AAC	p.N3180N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3180	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GAGAAATCTCATTAGCCAAGG	0.403			NA											20	94					0	0	0.007413	0	0
FN1	2335	broad.mit.edu	37	2	216274436	216274436	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:216274436G>T	uc002vfa.2	-	15	2415	c.2149C>A	c.(2149-2151)CCC>ACC	p.P717T	FN1_uc002vfb.2_Missense_Mutation_p.P717T|FN1_uc002vfc.2_Missense_Mutation_p.P717T|FN1_uc002vfd.2_Missense_Mutation_p.P717T|FN1_uc002vfe.2_Missense_Mutation_p.P717T|FN1_uc002vff.2_Missense_Mutation_p.P717T|FN1_uc002vfg.2_Missense_Mutation_p.P717T|FN1_uc002vfh.2_Missense_Mutation_p.P717T|FN1_uc002vfi.2_Missense_Mutation_p.P717T|FN1_uc002vfj.2_Missense_Mutation_p.P717T	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	717					acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGAGAAAAGGGAGTCGTCTCT	0.512			NA											7	49					0.000157383	0.00018148	0.00308	1	0
SLC19A3	80704	broad.mit.edu	37	2	228567010	228567010	+	Missense_Mutation	SNP	T	T	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:228567010T>G	uc002vpi.2	-	2	114	c.25A>C	c.(25-27)AGC>CGC	p.S9R	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_5'UTR	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	9	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	CAGGAACTGCTTAGTGAAGTT	0.393			NA											20	48					0	0	0.008871	0	0
TRAF3IP1	26146	broad.mit.edu	37	2	239237900	239237900	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:239237900G>T	uc002vye.2	+	5	951	c.832G>T	c.(832-834)GAC>TAC	p.D278Y	TRAF3IP1_uc002vyf.2_Missense_Mutation_p.D278Y	NM_015650	NP_056465	Q8TDR0	MIPT3_HUMAN	TNF receptor-associated factor 3 interacting	278	Abolishes microtubules-binding when missing.|DISC1-interaction domain.|Arg-rich.					cytoplasm|cytoskeleton	protein binding			ovary(1)	1		all_epithelial(40;3.22e-10)|Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.156)|all_hematologic(139;0.182)		Epithelial(121;9.92e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.85e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.01e-07)|BRCA - Breast invasive adenocarcinoma(100;7.72e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0184)		gaaggacagggacagacggag	0.179			NA											11	26					3.86212e-05	4.5183e-05	0.008291	1	0
LRRN4	164312	broad.mit.edu	37	20	6033166	6033166	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr20:6033166C>T	uc002wmo.2	-	2	504	c.280G>A	c.(280-282)GAG>AAG	p.E94K	LRRN4_uc002wmp.2_Missense_Mutation_p.E94K	NM_152611	NP_689824	Q8WUT4	LRRN4_HUMAN	leucine rich repeat neuronal 4 precursor	94	Extracellular (Potential).|LRR 2.					integral to membrane				skin(3)	3						TGGCCGAGCTCGGAAGTGCTC	0.741			NA											9	10					0	0	0.010729	0	0
C20orf4	25980	broad.mit.edu	37	20	34843634	34843635	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr20:34843634_34843635GG>TT	uc002xfc.1	+	4	1215_1216	c.1122_1123GG>TT	c.(1120-1125)GTGGTG>GTTTTG	p.V375L	C20orf4_uc002xfd.1_Intron|C20orf4_uc002xfe.1_Missense_Mutation_p.V375L	NM_015511	NP_056326	Q9Y312	CT004_HUMAN	hypothetical protein LOC25980	375											0	Breast(12;0.0162)	Myeloproliferative disorder(115;0.0393)				CCCCGGTGGTGGTGGAGCTCCC	0.604			NA											15	44					0	0	0.004672	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869547	36869547	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr20:36869547C>A	uc002xhy.1	-	3	1258	c.986G>T	c.(985-987)GGA>GTA	p.G329V	KIAA1755_uc002xhz.1_Missense_Mutation_p.G329V	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	329										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				CAAGGAAGGTCCTTCATTGGC	0.488			NA											86	184					2.93416e-43	4.74585e-43	0.01441	1	0
SALL4	57167	broad.mit.edu	37	20	50418834	50418834	+	Silent	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr20:50418834G>T	uc002xwh.3	-	1	215	c.114C>A	c.(112-114)CCC>CCA	p.P38P	SALL4_uc010gii.2_Silent_p.P38P|SALL4_uc002xwi.3_Silent_p.P38P	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	38					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						cccccgccgcgggcgccgctg	0.607			NA											3	21					0.004672	0.00507186	0.004672	1	0
SAMSN1	64092	broad.mit.edu	37	21	15884835	15884835	+	Silent	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr21:15884835G>T	uc002yju.1	-	4	421	c.339C>A	c.(337-339)ACC>ACA	p.T113T	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Silent_p.T181T	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	113					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		TCTCTGTGTGGGTCCCAATCA	0.463			NA											39	154					3.66082e-28	5.72894e-28	0.005524	1	0
SEZ6L	23544	broad.mit.edu	37	22	26706748	26706748	+	Missense_Mutation	SNP	G	G	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr22:26706748G>C	uc003acb.2	+	7	1783	c.1627G>C	c.(1627-1629)GAG>CAG	p.E543Q	SEZ6L_uc003acc.2_Missense_Mutation_p.E543Q|SEZ6L_uc011akc.1_Missense_Mutation_p.E543Q|SEZ6L_uc003acd.2_Missense_Mutation_p.E543Q|SEZ6L_uc011akd.1_Missense_Mutation_p.E543Q|SEZ6L_uc003ace.2_Missense_Mutation_p.E543Q|SEZ6L_uc003acf.1_Missense_Mutation_p.E316Q|SEZ6L_uc010gvc.1_Missense_Mutation_p.E316Q	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	543	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CATCCGCATCGAGTTCACGTC	0.597			NA											3	152					0	0	0.009096	0	0
GTPBP1	9567	broad.mit.edu	37	22	39122392	39122392	+	Missense_Mutation	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr22:39122392A>T	uc003awg.2	+	8	1502	c.1348A>T	c.(1348-1350)ATG>TTG	p.M450L		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	450					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					TCGCAAGCGCATGCCTGTCAA	0.547			NA											14	50					0	0	0.016723	0	0
MLC1	23209	broad.mit.edu	37	22	50502513	50502513	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr22:50502513C>T	uc003bjg.1	-	11	1282	c.1009G>A	c.(1009-1011)GGT>AGT	p.G337S	MLC1_uc011arl.1_Missense_Mutation_p.G285S|MLC1_uc003bjh.1_Missense_Mutation_p.G337S|MLC1_uc011arm.1_Missense_Mutation_p.G307S|MLC1_uc011arn.1_Missense_Mutation_p.G258S|MLC1_uc011aro.1_Missense_Mutation_p.G303S	NM_139202	NP_631941	Q15049	MLC1_HUMAN	megalencephalic leukoencephalopathy with	337						basolateral plasma membrane|endosome|integral to membrane|integral to membrane of membrane fraction	ion channel activity			pancreas(1)	1		all_cancers(38;7.69e-11)|all_epithelial(38;9.52e-10)|all_lung(38;3.67e-05)|Breast(42;0.000776)|Lung NSC(38;0.000946)|Ovarian(80;0.0365)|Lung SC(80;0.113)		READ - Rectum adenocarcinoma(2;0.000669)|Colorectal(2;0.00242)|LUAD - Lung adenocarcinoma(64;0.0695)|BRCA - Breast invasive adenocarcinoma(115;0.216)		CAGGATGCACCCTGCAGCCTT	0.582			NA											15	57					0	0	0.006122	0	0
CMTM7	112616	broad.mit.edu	37	3	32483336	32483336	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:32483336C>A	uc003cey.1	+	2	400	c.164C>A	c.(163-165)ACC>AAC	p.T55N	CMTM7_uc003cez.1_Missense_Mutation_p.T55N	NM_138410	NP_612419	Q96FZ5	CKLF7_HUMAN	CKLF-like MARVEL transmembrane domain containing	55	MARVEL.|Helical; (Potential).				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						TGGCAGGTCACCCTGCTGATT	0.522			NA											4	105					0.00909568	0.00969938	0.009096	1	0
TTC21A	199223	broad.mit.edu	37	3	39166949	39166949	+	Missense_Mutation	SNP	G	G	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:39166949G>C	uc003cjc.2	+	11	1519	c.1342G>C	c.(1342-1344)GAG>CAG	p.E448Q	TTC21A_uc003cje.2_Missense_Mutation_p.E448Q|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Missense_Mutation_p.E399Q	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	448							binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		TCTTGGCTCTGAGTACTTTGA	0.547			NA									OREG0015487	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	114					0	0	0.001168	0	0
LTF	4057	broad.mit.edu	37	3	46490396	46490396	+	Nonsense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:46490396G>T	uc003cpq.2	-	9	1208	c.1170C>A	c.(1168-1170)TGC>TGA	p.C390*	LTF_uc003fzr.2_Nonsense_Mutation_p.C346*|LTF_uc010hjh.2_Nonsense_Mutation_p.C390*|LTF_uc003cpr.2_Nonsense_Mutation_p.C377*	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	390	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	AGGCCGAGGAGCAGGTCACGC	0.692			NA											13	21					4.3838e-07	5.41793e-07	0.016723	1	0
ATRIP	84126	broad.mit.edu	37	3	48491469	48491469	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:48491469G>T	uc003ctf.1	+	2	306	c.274G>T	c.(274-276)GAT>TAT	p.D92Y	ATRIP_uc011bbj.1_5'UTR|ATRIP_uc003ctg.1_Missense_Mutation_p.D92Y	NM_130384	NP_569055	Q8WXE1	ATRIP_HUMAN	ATR interacting protein isoform 1	92					DNA damage checkpoint|DNA repair|DNA replication	nucleoplasm	protein binding|protein serine/threonine kinase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CAGATTATTAGATGGCATGTC	0.338			NA						Other_conserved_DNA_damage_response_genes					77	136					1.35621e-51	2.22345e-51	0.01441	1	0
HCLS1	3059	broad.mit.edu	37	3	121351229	121351229	+	Missense_Mutation	SNP	T	T	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:121351229T>G	uc003eeh.3	-	12	1315	c.1190A>C	c.(1189-1191)TAT>TCT	p.Y397S	HCLS1_uc011bjj.1_Missense_Mutation_p.Y360S|HCLS1_uc011bjk.1_RNA	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	397					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		CACCTCCTCATAGTCCCCCTC	0.433			NA											61	199					0	0	0.01441	0	0
SNX4	8723	broad.mit.edu	37	3	125208251	125208251	+	Splice_Site	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:125208251C>G	uc003eib.2	-	6	695	c.653_splice	c.e6+1	p.K218_splice	SNX4_uc011bkf.1_Splice_Site_p.K73_splice	NM_003794	NP_003785	O95219	SNX4_HUMAN	sorting nexin 4						cell communication|endocytic recycling|endocytosis|protein transport	cytoplasmic dynein complex|early endosome membrane	phosphatidylinositol binding|protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4						CAAAACCTTACTTGTCTGGGT	0.303			NA											14	42					0	0	0.020292	0	0
Unknown	0	broad.mit.edu	37	3	126916014	126916014	+	Silent	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:126916014C>A	uc003eji.1	+	2	726	c.486C>A	c.(484-486)GCC>GCA	p.A162A						RecName: Full=Putative uncharacterized protein C3orf56;												NA						GGACTCCAGCCAGCTCAGCCC	0.627			NA											45	75					2.95478e-19	4.34208e-19	0.00874	1	0
EPHB1	2047	broad.mit.edu	37	3	134851590	134851590	+	Missense_Mutation	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:134851590C>G	uc003eqt.2	+	5	1216	c.996C>G	c.(994-996)ATC>ATG	p.I332M	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Missense_Mutation_p.S221W|EPHB1_uc003equ.2_Translation_Start_Site	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	332	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						TTATCTCCATCGTCAATGAGA	0.547			NA											10	28					0	0	0.006214	0	0
SI	6476	broad.mit.edu	37	3	164741524	164741524	+	Missense_Mutation	SNP	C	C	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:164741524C>G	uc003fei.2	-	26	2995	c.2933G>C	c.(2932-2934)AGA>ACA	p.R978T		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	978	Lumenal.|P-type 2.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GTTATCTTGTCTGGGAAAGTA	0.373			NA								HNSCC(35;0.089)			15	45					0	0	0.004007	0	0
RTP2	344892	broad.mit.edu	37	3	187416668	187416668	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr3:187416668C>A	uc003fro.1	-	2	725	c.296G>T	c.(295-297)TGC>TTC	p.C99F		NM_001004312	NP_001004312	Q5QGT7	RTP2_HUMAN	receptor transporting protein 2	99	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding				0	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0515)		CGCCGTGCCGCACTCATAGCA	0.647			NA											7	24					1.06961e-07	1.34259e-07	0.00308	1	0
ZNF518B	85460	broad.mit.edu	37	4	10446391	10446391	+	Missense_Mutation	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr4:10446391T>A	uc003gmn.2	-	3	2049	c.1562A>T	c.(1561-1563)CAC>CTC	p.H521L		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	521					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						TGAGCTACTGTGTAAATTTCT	0.403			NA											25	81					0	0	0.004656	0	0
Unknown	0	broad.mit.edu	37	4	69343154	69343154	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr4:69343154G>T	uc003hdz.3	+	8	839	c.775G>T	c.(775-777)GGT>TGT	p.G259C		NM_014058	NP_054777			transmembrane protease, serine 11E												NA						AATGAAACGGGGTCTCCGGAG	0.388			NA											41	243					2.42038e-35	3.88875e-35	0.007835	1	0
SMR3A	26952	broad.mit.edu	37	4	71232648	71232648	+	Silent	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr4:71232648T>A	uc003hfg.1	+	3	423	c.342T>A	c.(340-342)CCT>CCA	p.P114P	SMR3B_uc011cas.1_Intron	NM_012390	NP_036522	Q99954	SMR3A_HUMAN	submaxillary gland androgen regulated protein 3	114	Pro-rich.					extracellular region					0		all_hematologic(202;0.196)				CCTATCCACCTGGACCTCCAT	0.517			NA											35	74					0	0	0.021022	0	0
MAML3	55534	broad.mit.edu	37	4	140640665	140640665	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr4:140640665G>A	uc003ihz.1	-	7	3966	c.3214C>T	c.(3214-3216)CCA>TCA	p.P1072S	MGST2_uc010ioi.1_Intron|MAML3_uc011chd.1_Missense_Mutation_p.P540S	NM_018717	NP_061187	Q96JK9	MAML3_HUMAN	mastermind-like 3	1073					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity			ovary(1)	1	all_hematologic(180;0.162)					TGGCTGCTTGGAGCAAAGCTG	0.622			NA											8	30					0	0	0.008291	0	0
OTUD4	54726	broad.mit.edu	37	4	146077104	146077104	+	Missense_Mutation	SNP	G	G	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr4:146077104G>C	uc003ika.3	-	8	617	c.479C>G	c.(478-480)CCT>CGT	p.P160R	OTUD4_uc003ijz.3_Missense_Mutation_p.P160R	NM_001102653	NP_001096123	Q01804	OTUD4_HUMAN	OTU domain containing 4 protein isoform 3	225							protein binding			ovary(2)|breast(1)	3	all_hematologic(180;0.151)					GCCTGACAAAGGTTTAAATCC	0.313			NA											13	54					0	0	0.016723	0	0
TRIM2	23321	broad.mit.edu	37	4	154217122	154217122	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr4:154217122G>T	uc003ing.2	+	6	1564	c.1363G>T	c.(1363-1365)GCA>TCA	p.A455S	TRIM2_uc003inh.2_Missense_Mutation_p.A482S	NM_001130067	NP_001123539	Q9C040	TRIM2_HUMAN	tripartite motif-containing 2 isoform 2	455						cytoplasm	zinc ion binding			central_nervous_system(1)	1	all_hematologic(180;0.093)	Medulloblastoma(177;0.00225)		GBM - Glioblastoma multiforme(119;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0703)		GAAAAGACCCGCAAGCATGTA	0.557			NA											8	38					5.18039e-06	6.21132e-06	0.00308	1	0
ODZ3	55714	broad.mit.edu	37	4	183245345	183245345	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr4:183245345C>A	uc003ivd.1	+	1	209	c.172C>A	c.(172-174)CTT>ATT	p.L58I	ODZ3_uc010irv.1_Missense_Mutation_p.L58I	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	58	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CTCGCGGCTGCTTTACGGCAA	0.478			NA											23	76					0.00278032	0.00308782	0.016522	1	0
F11	2160	broad.mit.edu	37	4	187192834	187192834	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr4:187192834G>T	uc003iza.1	+	3	460	c.127G>T	c.(127-129)GCC>TCC	p.A43S	F11_uc003iyz.2_Missense_Mutation_p.A43S	NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	43	Apple 1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	CACACCAAGCGCCAAGTACTG	0.488			NA											12	92					4.84862e-15	6.7937e-15	0.010729	1	0
OXCT1	5019	broad.mit.edu	37	5	41853613	41853613	+	Missense_Mutation	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr5:41853613T>A	uc003jmn.2	-	4	653	c.322A>T	c.(322-324)ATA>TTA	p.I108L		NM_000436	NP_000427	P55809	SCOT1_HUMAN	3-oxoacid CoA transferase 1 precursor	108					cellular lipid metabolic process|ketone body catabolic process	mitochondrial matrix	3-oxoacid CoA-transferase activity|protein homodimerization activity			ovary(2)|large_intestine(1)	3					Succinic acid(DB00139)	ATGCGTTTTATCTGCTTGGAC	0.423			NA											3	38					0	0	0.009096	0	0
KCNN2	3781	broad.mit.edu	37	5	113831719	113831719	+	Missense_Mutation	SNP	T	T	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr5:113831719T>C	uc003kqo.2	+	8	2037	c.1580T>C	c.(1579-1581)CTC>CCC	p.L527P	KCNN2_uc003kqp.2_Missense_Mutation_p.L179P|KCNN2_uc010jcg.2_RNA|uc003kqr.1_Intron	NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	527						integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		CTCCCTGGGCTCATAAGCCAG	0.502			NA											3	135					0	0	0.004672	0	0
TRIM36	55521	broad.mit.edu	37	5	114482982	114482982	+	Silent	SNP	G	G	A	rs139015715	byFrequency	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr5:114482982G>A	uc003kqs.2	-	3	917	c.408C>T	c.(406-408)TTC>TTT	p.F136F	TRIM36_uc011cwc.1_Silent_p.F124F|TRIM36_uc003kqt.2_5'UTR	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	136						acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		TTTCCAAAGTGAAGTTTCGAA	0.458			NA											11	134					0	0	0.008291	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531678	140531678	+	Missense_Mutation	SNP	G	G	A	rs137911178		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr5:140531678G>A	uc003lir.2	+	1	1840	c.1840G>A	c.(1840-1842)GGC>AGC	p.G614S	PCDHB6_uc011dah.1_Missense_Mutation_p.G478S	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	614	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGGTCTGTTCGGCGTGTGGGC	0.667			NA											5	67					0	0	0.00308	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579865	140579865	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr5:140579865G>T	uc003liy.2	+	1	518	c.518G>T	c.(517-519)AGC>ATC	p.S173I	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	173	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TACACAATAAGCCCCAACTCT	0.428			NA											25	93					1.66031e-10	2.19854e-10	0.021523	1	0
PCDHB12	56124	broad.mit.edu	37	5	140589508	140589508	+	Silent	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr5:140589508C>T	uc003liz.2	+	1	1218	c.1029C>T	c.(1027-1029)AAC>AAT	p.N343N	PCDHB12_uc011dak.1_Silent_p.N6N	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	343	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TAAACGACAACGCTCCTGAAA	0.433			NA											21	59					0	0	0.010504	0	0
JAKMIP2	9832	broad.mit.edu	37	5	146997537	146997537	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr5:146997537C>A	uc003loq.1	-	19	2665	c.2283G>T	c.(2281-2283)AAG>AAT	p.K761N	JAKMIP2_uc011dbx.1_Missense_Mutation_p.K719N|JAKMIP2_uc003lor.1_Missense_Mutation_p.K740N|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.K761N	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	761	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTCTCTGCTCTTCCTCAGCA	0.463			NA											19	80					1.45105e-14	2.02141e-14	0.006122	1	0
SQSTM1	8878	broad.mit.edu	37	5	179249978	179249978	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr5:179249978G>T	uc003mkw.3	+	2	321	c.226G>T	c.(226-228)GCC>TCC	p.A76S	SQSTM1_uc011dgr.1_5'UTR|SQSTM1_uc011dgs.1_5'UTR|SQSTM1_uc003mkv.3_Missense_Mutation_p.A76S|SQSTM1_uc003mkx.2_5'UTR	NM_003900	NP_003891	Q13501	SQSTM_HUMAN	sequestosome 1 isoform 1	76	OPR.|Interaction with PRKCZ and dimerization (By similarity).|Interaction with PAWR.				anti-apoptosis|apoptosis|cell differentiation|endosome transport|induction of apoptosis by extracellular signals|intracellular signal transduction|macroautophagy|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein localization|regulation of I-kappaB kinase/NF-kappaB cascade|ubiquitin-dependent protein catabolic process	cytosol|late endosome|nucleoplasm	protein kinase C binding|receptor tyrosine kinase binding|SH2 domain binding|ubiquitin binding|zinc ion binding		SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(89;0.000205)|all_epithelial(37;7.15e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0395)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGACTTGGTTGCCTTTTCCAG	0.517			NA							Paget_Disease_of_Bone				7	51					5.4927e-09	7.04118e-09	0.004482	1	0
F13A1	2162	broad.mit.edu	37	6	6167695	6167695	+	Missense_Mutation	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:6167695A>T	uc003mwv.2	-	13	2027	c.1904T>A	c.(1903-1905)ATC>AAC	p.I635N	F13A1_uc011dib.1_Missense_Mutation_p.I572N	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	635					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	ACTGACCTTGATGATGATCTC	0.408			NA											22	77					0	0	0.016522	0	0
CAGE1	285782	broad.mit.edu	37	6	7334277	7334277	+	Nonsense_Mutation	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:7334277T>A	uc003mxi.2	-	9	2543	c.1822A>T	c.(1822-1824)AGA>TGA	p.R608*	CAGE1_uc003mxh.2_RNA|CAGE1_uc003mxj.2_Nonsense_Mutation_p.R561*|CAGE1_uc003mxk.1_Nonsense_Mutation_p.R526*	NM_205864	NP_995586	Q8TC20	CAGE1_HUMAN	cancer antigen 1	744											0	Ovarian(93;0.0418)					GCTTTTTCTCTGGGCTTTCTA	0.234			NA											3	10					0	0	0.009096	0	0
ATXN1	6310	broad.mit.edu	37	6	16327897	16327897	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:16327897C>A	uc003nbt.2	-	8	1616	c.645G>T	c.(643-645)CAG>CAT	p.Q215H	ATXN1_uc010jpi.2_Missense_Mutation_p.Q215H|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	215	Poly-Gln.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				gctgctgctgctgctgctgct	0.378			NA											3	6					2.56e-06	3.11596e-06	0.009096	1	0
HDGFL1	154150	broad.mit.edu	37	6	22569816	22569816	+	Silent	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:22569816C>T	uc003nds.2	+	1	139	c.12C>T	c.(10-12)TAC>TAT	p.Y4Y		NM_138574	NP_612641	Q5TGJ6	HDGL1_HUMAN	hepatoma derived growth factor-like 1	4											0	Ovarian(93;0.163)					TGTCGGCCTACGGCATGCCCA	0.647			NA											12	36					0	0	0.013537	0	0
KIAA0319	9856	broad.mit.edu	37	6	24596749	24596749	+	Silent	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:24596749G>A	uc011djo.1	-	3	390	c.153C>T	c.(151-153)ACC>ACT	p.T51T	KIAA0319_uc011djp.1_Silent_p.T6T|KIAA0319_uc003neh.1_Silent_p.T51T|KIAA0319_uc011djq.1_Silent_p.T42T|KIAA0319_uc011djr.1_Silent_p.T51T	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	51	MANSC.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						CGACAGGGAAGGTGTGAGACA	0.582			NA											14	57					0	0	0.016723	0	0
GPR111	222611	broad.mit.edu	37	6	47647861	47647861	+	Missense_Mutation	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:47647861A>G	uc010jzj.1	+	5	527	c.526A>G	c.(526-528)ACT>GCT	p.T176A	GPR111_uc010jzk.1_Missense_Mutation_p.T108A|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	176	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						AAGTGTATATACTGGAAAGTC	0.333			NA											10	27					0	0	0.006214	0	0
PRIM2	5558	broad.mit.edu	37	6	57512650	57512650	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:57512650C>A	uc003pdx.2	+	15	1565	c.1478C>A	c.(1477-1479)TCT>TAT	p.S493Y		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	493					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		TTAAATTCCTCTCTGGAAATG	0.403			NA											50	528					2.02627e-32	3.21271e-32	0.01441	1	0
COL12A1	1303	broad.mit.edu	37	6	75875304	75875304	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:75875304C>T	uc003phs.2	-	14	3068	c.2902G>A	c.(2902-2904)GAG>AAG	p.E968K	COL12A1_uc003pht.2_Intron	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	968	Fibronectin type-III 6.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TATTTGGTCTCTGGCTGCAGA	0.408			NA											27	128					0	0	0.021523	0	0
MDN1	23195	broad.mit.edu	37	6	90472078	90472078	+	Silent	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:90472078G>A	uc003pnn.1	-	16	2432	c.2316C>T	c.(2314-2316)CAC>CAT	p.H772H	MDN1_uc003pno.1_Silent_p.H190H	NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	772					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CAGCAGACTTGTGTACATGCT	0.468			NA											22	122					0	0	0.016522	0	0
REV3L	5980	broad.mit.edu	37	6	111694531	111694531	+	Missense_Mutation	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:111694531T>A	uc003puy.3	-	13	5350	c.5027A>T	c.(5026-5028)AAG>ATG	p.K1676M	REV3L_uc003pux.3_Missense_Mutation_p.K1598M|REV3L_uc003puz.3_Missense_Mutation_p.K1598M	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1676					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		acttaggaacttctgaggcaa	0.279			NA						DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					10	38					0	0	0.008291	0	0
SYNE1	23345	broad.mit.edu	37	6	152605151	152605151	+	Missense_Mutation	SNP	T	T	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:152605151T>A	uc010kiw.2	-	96	18771	c.18169A>T	c.(18169-18171)ATC>TTC	p.I6057F	SYNE1_uc010kiv.2_Missense_Mutation_p.I581F|SYNE1_uc003qos.3_Missense_Mutation_p.I581F|SYNE1_uc003qot.3_Missense_Mutation_p.I5986F|SYNE1_uc003qou.3_Missense_Mutation_p.I6057F|SYNE1_uc010kiy.1_Missense_Mutation_p.I236F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6057	Spectrin 20.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTCATCCTGATGGTGGACATT	0.532			NA								HNSCC(10;0.0054)			15	62					0	0	0.00499	0	0
FIGNL1	63979	broad.mit.edu	37	7	50513841	50513841	+	Missense_Mutation	SNP	T	T	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:50513841T>C	uc003tpc.2	-	4	1522	c.1145A>G	c.(1144-1146)AAG>AGG	p.K382R	FIGNL1_uc003tpb.2_Missense_Mutation_p.K271R|FIGNL1_uc003tpd.2_Missense_Mutation_p.K382R|FIGNL1_uc003tpe.2_Missense_Mutation_p.K382R|FIGNL1_uc010kyy.2_Missense_Mutation_p.K382R	NM_001042762	NP_001036227	Q6PIW4	FIGL1_HUMAN	fidgetin-like 1	382					ATP metabolic process|negative regulation of apoptosis|osteoblast differentiation|osteoblast proliferation|regulation of cell cycle	cytoplasm|nucleus	ATP binding|magnesium ion binding|nucleoside-triphosphatase activity			ovary(3)	3	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;3.73e-08)|all_hematologic(4;7.51e-06)				TTCAATCATCTTTGGCTCCAA	0.438			NA											68	186					0	0	0.01441	0	0
VOPP1	81552	broad.mit.edu	37	7	55540620	55540620	+	Silent	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:55540620C>A	uc003tqs.2	-	5	630	c.447G>T	c.(445-447)GTG>GTT	p.V149V	VOPP1_uc003tqq.2_Silent_p.V140V|VOPP1_uc010kzh.2_Silent_p.V146V|VOPP1_uc010kzi.2_Silent_p.V132V|VOPP1_uc011kcr.1_Silent_p.V81V	NM_030796	NP_110423	Q96AW1	VOPP1_HUMAN	EGFR-coamplified and overexpressed protein	149	Pro-rich.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic vesicle membrane|endosome|integral to organelle membrane	signal transducer activity				0						GCGGGCAGGCCACACTCCCCT	0.637			NA											6	12					0.00198382	0.00221343	0.001984	1	0
ZNF713	349075	broad.mit.edu	37	7	55980359	55980359	+	Translation_Start_Site	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:55980359G>T	uc003trc.1	+	1	29	c.-9G>T	c.(-11--7)CAGGA>CATGA		ZNF713_uc003tra.1_Missense_Mutation_p.Q10H|MRPS17_uc003trb.2_Splice_Site	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			TTTTTTCTCAGGAGGGGAACA	0.408			NA											10	30					0.00136819	0.00154082	0.013537	1	0
MAGI2	9863	broad.mit.edu	37	7	77762279	77762279	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:77762279G>T	uc003ugx.2	-	18	3384	c.3130C>A	c.(3130-3132)CCA>ACA	p.P1044T	MAGI2_uc003ugy.2_Missense_Mutation_p.P1030T|MAGI2_uc010ldx.1_Missense_Mutation_p.P637T	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1044	Pro-rich.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GGGGTGGCTGGGCTTGGCTGG	0.592			NA											127	283					1.41444e-48	2.30324e-48	0.01441	1	0
AASS	10157	broad.mit.edu	37	7	121773752	121773752	+	Missense_Mutation	SNP	C	C	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:121773752C>T	uc003vka.2	-	1	125	c.29G>A	c.(28-30)GGC>GAC	p.G10D	AASS_uc011knu.1_RNA|AASS_uc011knv.1_RNA|AASS_uc003vkb.2_Missense_Mutation_p.G10D|AASS_uc011knw.1_Intron	NM_005763	NP_005754	Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase precursor	10					protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			upper_aerodigestive_tract(1)|ovary(1)	2					L-Glutamic Acid(DB00142)|NADH(DB00157)	CCCCAGCCTGCCCAGTCCAGT	0.562			NA											4	173					0	0	0.009096	0	0
MGAM	8972	broad.mit.edu	37	7	141727025	141727025	+	Nonsense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:141727025G>T	uc003vwy.2	+	9	1147	c.1093G>T	c.(1093-1095)GAG>TAG	p.E365*		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	365	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGAATATCTAGAGGTAAACTT	0.413			NA											54	75					1.32667e-27	2.04954e-27	0.01441	1	0
PRSS1	5644	broad.mit.edu	37	7	142458502	142458502	+	Missense_Mutation	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:142458502A>T	uc003wak.2	+	2	154	c.137A>T	c.(136-138)CAC>CTC	p.H46L	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Silent_p.P21P|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	46	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			TCTGGCTACCACTTCTGTGGT	0.562			NA							Hereditary_Pancreatitis				59	94					0	0	0.01441	0	0
TAS2R39	259285	broad.mit.edu	37	7	142880730	142880730	+	Silent	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:142880730C>A	uc011ksw.1	+	1	219	c.219C>A	c.(217-219)GGC>GGA	p.G73G		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	73	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					CCACAAGTGGCAGGATCCTGG	0.403			NA											55	61					4.1673e-28	6.47949e-28	0.01441	1	0
CLCN1	1180	broad.mit.edu	37	7	143018931	143018931	+	Missense_Mutation	SNP	T	T	C			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:143018931T>C	uc003wcr.1	+	5	773	c.686T>C	c.(685-687)GTG>GCG	p.V229A	CLCN1_uc011ktc.1_5'UTR|CLCN1_uc003wcs.1_RNA|CLCN1_uc010lox.1_RNA|CLCN1_uc010loy.1_Missense_Mutation_p.V77A	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	229					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GGCATCCCCGTGGGGAAAGAG	0.597			NA											11	26					0	0	0.008291	0	0
CHPF2	54480	broad.mit.edu	37	7	150934520	150934520	+	Missense_Mutation	SNP	G	G	A	rs139006025	byFrequency	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr7:150934520G>A	uc003wjr.1	+	4	2585	c.1072G>A	c.(1072-1074)GTT>ATT	p.V358I	CHPF2_uc003wjq.1_Missense_Mutation_p.V350I|MIR671_hsa-mir-671|MI0003760_5'Flank	NM_019015	NP_061888	Q9P2E5	CHPF2_HUMAN	chondroitin polymerizing factor 2	358	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity			ovary(1)	1						GAGCTGGCCCGTTGGGCTCCC	0.622			NA											6	86					0	0	0.001168	0	0
ST18	9705	broad.mit.edu	37	8	53044594	53044594	+	Nonsense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr8:53044594G>A	uc003xqz.2	-	17	2746	c.2590C>T	c.(2590-2592)CAA>TAA	p.Q864*	ST18_uc011ldq.1_Nonsense_Mutation_p.Q511*|ST18_uc011ldr.1_Nonsense_Mutation_p.Q829*|ST18_uc011lds.1_Nonsense_Mutation_p.Q769*|ST18_uc003xra.2_Nonsense_Mutation_p.Q864*	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	864						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GGTAGCTCTTGTTTGTTCAGT	0.488			NA											25	62					0	0	0.016522	0	0
TRIM55	84675	broad.mit.edu	37	8	67086790	67086790	+	Missense_Mutation	SNP	A	A	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr8:67086790A>T	uc003xvv.2	+	10	1835	c.1609A>T	c.(1609-1611)ATC>TTC	p.I537F	TRIM55_uc003xvu.2_3'UTR|TRIM55_uc003xvw.2_Missense_Mutation_p.I441F|TRIM55_uc003xvx.2_Missense_Mutation_p.I230F	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	537						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			AGCTCGCCATATCTTCTCCTT	0.532			NA											5	140					0	0	0.001984	0	0
FAM84B	157638	broad.mit.edu	37	8	127569531	127569531	+	Missense_Mutation	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr8:127569531G>T	uc003yrz.1	-	2	388	c.104C>A	c.(103-105)TCC>TAC	p.S35Y		NM_174911	NP_777571	Q96KN1	FA84B_HUMAN	family with sequence similarity 84, member B	35						cytoplasm|plasma membrane	protein binding				0	Ovarian(5;9.43e-05)|Esophageal squamous(12;0.0012)|Hepatocellular(40;0.128)|Myeloproliferative disorder(2;0.135)		STAD - Stomach adenocarcinoma(47;0.000556)|Colorectal(2;0.0102)|Lung(2;0.0136)|READ - Rectum adenocarcinoma(2;0.0723)			GAAAATGTAGGAGACCCCAAT	0.672			NA											11	25					2.80697e-09	3.65665e-09	0.010729	1	0
EIF2C2	27161	broad.mit.edu	37	8	141561493	141561493	+	Missense_Mutation	SNP	G	G	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr8:141561493G>A	uc003yvn.2	-	11	1352	c.1312C>T	c.(1312-1314)CGG>TGG	p.R438W	EIF2C2_uc010men.2_Missense_Mutation_p.R361W|EIF2C2_uc010meo.2_Missense_Mutation_p.R438W	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	438					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			TGCTTGTTCCGCATGTCCCAG	0.532			NA											4	120					0	0	0.009096	0	0
UNC13B	10497	broad.mit.edu	37	9	35377536	35377536	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr9:35377536C>A	uc003zwq.2	+	15	1952	c.1660C>A	c.(1660-1662)CGC>AGC	p.R554S	UNC13B_uc003zwr.2_Missense_Mutation_p.R554S	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	554					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			CATGAAGGACCGCATGAAGAT	0.502			NA											4	58					0.00909568	0.00969938	0.009096	1	0
OR13C8	138802	broad.mit.edu	37	9	107332316	107332316	+	Missense_Mutation	SNP	A	A	G			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr9:107332316A>G	uc011lvo.1	+	1	868	c.868A>G	c.(868-870)ATG>GTG	p.M290V		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GATGACTCCCATGCTTAATCC	0.408			NA											24	55					0	0	0.014323	0	0
GARNL3	84253	broad.mit.edu	37	9	130151342	130151342	+	Missense_Mutation	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr9:130151342C>A	uc011mae.1	+	26	3088	c.2687C>A	c.(2686-2688)TCC>TAC	p.S896Y	GARNL3_uc011mad.1_Missense_Mutation_p.S874Y|GARNL3_uc010mxi.2_Missense_Mutation_p.S126Y	NM_032293	NP_115669	Q5VVW2	GARL3_HUMAN	GTPase activating Rap/RanGAP domain-like 3	896					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity|small GTPase regulator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CACTCCTTGTCCCTGTCTCGC	0.532			NA											4	45					0.00024832	0.000284977	0.009096	1	0
MXRA5	25878	broad.mit.edu	37	X	3238683	3238683	+	Silent	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chrX:3238683G>T	uc004crg.3	-	5	5200	c.5043C>A	c.(5041-5043)CCC>CCA	p.P1681P		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1681						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TAGGAATGCTGGGTTTGGACA	0.418			NA											60	93					1.84395e-34	2.94299e-34	0.01441	1	0
CT47B1	643311	broad.mit.edu	37	X	120008904	120008904	+	Silent	SNP	C	C	A			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chrX:120008904C>A	uc011muc.1	-	1	876	c.621G>T	c.(619-621)GTG>GTT	p.V207V		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	207											0						GGTCAGCTGGCACTGCAGGCT	0.582			NA											9	84					0.00621372	0.00668529	0.006214	1	0
FHL1	2273	broad.mit.edu	37	X	135290072	135290072	+	Silent	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chrX:135290072G>T	uc004ezo.2	+	4	553	c.453G>T	c.(451-453)GTG>GTT	p.V151V	FHL1_uc010nrz.2_Silent_p.V151V|FHL1_uc004ezm.2_Intron|FHL1_uc004ezl.2_Silent_p.V151V|FHL1_uc004ezq.2_Silent_p.V151V|FHL1_uc011mvy.1_Silent_p.V151V|FHL1_uc011mvz.1_Silent_p.V151V|FHL1_uc004ezn.2_Silent_p.V151V|FHL1_uc011mwa.1_Silent_p.V180V|FHL1_uc011mwb.1_RNA|FHL1_uc004ezp.2_Silent_p.V167V|FHL1_uc004ezr.2_5'UTR	NM_001159702	NP_001153174	Q13642	FHL1_HUMAN	four and a half LIM domains 1 isoform 1	151	LIM zinc-binding 2.				cell differentiation|cell growth|muscle organ development|organ morphogenesis	cytosol|nucleus|plasma membrane	protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(192;0.000127)					TCTACTGCGTGACTTGCCATG	0.473			NA											20	36					9.95505e-16	1.41963e-15	0.014323	1	0
MAGEA12	4111	broad.mit.edu	37	X	151900216	151900216	+	Silent	SNP	G	G	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chrX:151900216G>T	uc010ntp.2	-	3	939	c.585C>A	c.(583-585)ATC>ATA	p.I195I	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.I195I	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	195	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TCTTGGGCACGATCTGATTGT	0.577			NA											57	100					1.4374e-25	2.20645e-25	0.01441	1	0
CACNA1E	777	broad.mit.edu	37	1	181725171	181725171	+	Frame_Shift_Del	DEL	A	A	-			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:181725171delA	uc001gow.2	+	29	4234	c.4069delA	c.(4069-4071)AACfs	p.N1357fs	CACNA1E_uc009wxs.2_Frame_Shift_Del_p.N1245fs|CACNA1E_uc001gox.1_Frame_Shift_Del_p.N583fs|CACNA1E_uc009wxt.2_Frame_Shift_Del_p.N583fs	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1357	Extracellular (Potential).|III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCACTACGACAACATTATCTG	0.498			NA											14	40	---	---	---	---	NA	NA	NA	NA	NA
RPS6KC1	26750	broad.mit.edu	37	1	213445938	213445939	+	Frame_Shift_Ins	INS	-	-	T			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr1:213445938_213445939insT	uc010ptr.1	+	15	3321_3322	c.3162_3163insT	c.(3160-3165)CCATTTfs	p.P1054fs	RPS6KC1_uc001hkd.2_Frame_Shift_Ins_p.P1042fs|RPS6KC1_uc010pts.1_Frame_Shift_Ins_p.P842fs|RPS6KC1_uc010ptt.1_Frame_Shift_Ins_p.P842fs|RPS6KC1_uc010ptu.1_Frame_Shift_Ins_p.P873fs|RPS6KC1_uc010ptv.1_Frame_Shift_Ins_p.P589fs|RPS6KC1_uc001hke.2_Frame_Shift_Ins_p.P873fs	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	1054_1055	Protein kinase 2.				cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		AATCTCATCCATTTTTTACCCC	0.441			NA											11	137	---	---	---	---	NA	NA	NA	NA	NA
ARID4A	5926	broad.mit.edu	37	14	58825910	58825911	+	Frame_Shift_Ins	INS	-	-	A	rs151278543		TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:58825910_58825911insA	uc001xdp.2	+	18	2168_2169	c.1914_1915insA	c.(1912-1917)AAGAAAfs	p.K638fs	ARID4A_uc001xdo.2_Frame_Shift_Ins_p.K638fs|ARID4A_uc001xdq.2_Frame_Shift_Ins_p.K638fs|ARID4A_uc010apg.1_Frame_Shift_Ins_p.K316fs	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	638_639					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity	p.K638K(1)		ovary(3)|skin(2)|lung(1)	6						GTGGACCAAAGAAAAAACAGAA	0.282			NA											29	78	---	---	---	---	NA	NA	NA	NA	NA
TDP1	55775	broad.mit.edu	37	14	90455406	90455415	+	Frame_Shift_Del	DEL	CAGGAAAAAG	CAGGAAAAAG	-			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	CAGGAAAAAG	CAGGAAAAAG	-	-	CAGGAAAAAG	CAGGAAAAAG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr14:90455406_90455415delCAGGAAAAAG	uc001xxy.2	+	11	1588_1597	c.1289_1298delCAGGAAAAAG	c.(1288-1299)CCAGGAAAAAGCfs	p.P430fs	TDP1_uc010atm.2_RNA|TDP1_uc001xxz.2_Frame_Shift_Del_p.P430fs|TDP1_uc010atn.2_Frame_Shift_Del_p.P430fs|TDP1_uc001xya.2_Frame_Shift_Del_p.P191fs|TDP1_uc001xyb.2_RNA|TDP1_uc010ato.2_Frame_Shift_Del_p.P430fs|TDP1_uc001xyd.1_Frame_Shift_Del_p.P45fs	NM_018319	NP_060789	Q9NUW8	TYDP1_HUMAN	tyrosyl-DNA phosphodiesterase 1	430_433					cell death|double-strand break repair|single strand break repair	cytoplasm|nucleus	3'-tyrosyl-DNA phosphodiesterase activity|double-stranded DNA binding|exonuclease activity|protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(154;0.185)		COAD - Colon adenocarcinoma(157;0.23)		AGCAAGACTCCAGGAAAAAGCTCTGTTCCT	0.424			NA						Repair_of_DNA-protein_crosslinks					9	89	---	---	---	---	NA	NA	NA	NA	NA
FURIN	5045	broad.mit.edu	37	15	91425068	91425073	+	In_Frame_Del	DEL	GCGAGA	GCGAGA	-			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	GCGAGA	GCGAGA	-	-	GCGAGA	GCGAGA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr15:91425068_91425073delGCGAGA	uc002bpu.1	+	16	2561_2566	c.2345_2350delGCGAGA	c.(2344-2352)GGCGAGAGG>GGG	p.ER783del	FES_uc010uqj.1_5'Flank|FES_uc010uqk.1_5'Flank|FES_uc002bpw.2_5'Flank|FES_uc002bpv.2_5'Flank	NM_002569	NP_002560	P09958	FURIN_HUMAN	furin preproprotein	783_784					cell proliferation|negative regulation of low-density lipoprotein particle receptor catabolic process|negative regulation of transforming growth factor-beta1 production|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|Notch signaling pathway|peptide biosynthetic process|peptidyl-glutamic acid carboxylation|post-translational protein modification|secretion by cell|signal peptide processing|transforming growth factor beta receptor signaling pathway|viral assembly, maturation, egress, and release	cell surface|Golgi lumen|Golgi membrane|integral to membrane|membrane raft|plasma membrane|trans-Golgi network|trans-Golgi network transport vesicle	metal ion binding|nerve growth factor binding|peptide binding|protease binding|serine-type endopeptidase activity|serine-type endopeptidase inhibitor activity			central_nervous_system(4)|lung(2)|breast(1)	7	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.189)			GAGGGCCGGGGCGAGAGGACCGCCTT	0.597			NA											8	68	---	---	---	---	NA	NA	NA	NA	NA
ZSWIM4	65249	broad.mit.edu	37	19	13941261	13941261	+	Frame_Shift_Del	DEL	C	C	-			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr19:13941261delC	uc002mxh.1	+	13	2556	c.2367delC	c.(2365-2367)TACfs	p.Y789fs	ZSWIM4_uc010xng.1_Frame_Shift_Del_p.Y712fs	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	789							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			AGGCGGCCTACCAGATCGTGC	0.692			NA											39	77	---	---	---	---	NA	NA	NA	NA	NA
TTN	7273	broad.mit.edu	37	2	179588160	179588160	+	Frame_Shift_Del	DEL	G	G	-			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr2:179588160delG	uc010zfg.1	-	71	18159	c.17935delC	c.(17935-17937)CGTfs	p.R5979fs	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Frame_Shift_Del_p.R2640fs	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6906							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAAAGAGACGGGTAGTGCAA	0.413			NA											12	36	---	---	---	---	NA	NA	NA	NA	NA
SEPT3	55964	broad.mit.edu	37	22	42392949	42392949	+	Frame_Shift_Del	DEL	C	C	-			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr22:42392949delC	uc003bbr.3	+	11	1193	c.1055delC	c.(1054-1056)ACCfs	p.T352fs	WBP2NL_uc011ape.1_Intron|SEPT3_uc003bbs.3_3'UTR|SEPT3_uc010gyr.2_Frame_Shift_Del_p.T288fs|SEPT3_uc011apj.1_3'UTR|SEPT3_uc010gys.2_Frame_Shift_Del_p.T132fs|WBP2NL_uc003bbt.2_5'Flank|WBP2NL_uc011apk.1_5'Flank|WBP2NL_uc003bbu.2_5'Flank	NM_145733	NP_663786	Q9UH03	SEPT3_HUMAN	septin 3 isoform A	352					cell cycle|cytokinesis	cell junction|septin complex	GTP binding				0						GTGCCAGCCACCCCCTGCCCC	0.587			NA											36	124	---	---	---	---	NA	NA	NA	NA	NA
CCDC99	54908	broad.mit.edu	37	5	169023598	169023599	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	TC	TC	-	-	TC	TC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr5:169023598_169023599delTC	uc003mae.3	+	8	1204_1205	c.925_926delTC	c.(925-927)TCTfs	p.S309fs	CCDC99_uc010jjj.2_Frame_Shift_Del_p.S238fs|CCDC99_uc011deq.1_Frame_Shift_Del_p.S126fs|CCDC99_uc010jjk.2_Frame_Shift_Del_p.S35fs	NM_017785	NP_060255	Q96EA4	SPDLY_HUMAN	coiled-coil domain containing 99	309	Potential.				cell division|establishment of mitotic spindle orientation|mitotic metaphase plate congression|mitotic prometaphase|protein localization to kinetochore	condensed chromosome outer kinetochore|cytosol|microtubule organizing center|nucleus|spindle pole	kinetochore binding|protein binding			ovary(1)|liver(1)	2	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GATGAAAGGGTCTCAAACTGAA	0.347			NA											25	82	---	---	---	---	NA	NA	NA	NA	NA
SMOC2	64094	broad.mit.edu	37	6	169053663	169053663	+	Frame_Shift_Del	DEL	T	T	-			TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr6:169053663delT	uc003qws.1	+	11	1060	c.1040delT	c.(1039-1041)CTAfs	p.L347fs	SMOC2_uc003qwr.1_Frame_Shift_Del_p.L358fs|SMOC2_uc011egu.1_Frame_Shift_Del_p.L24fs	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	347	EF-hand 1.				signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		AGCCATACCCTAGAGGAGCGG	0.542			NA											9	48	---	---	---	---	NA	NA	NA	NA	NA
ZNF395	55893	broad.mit.edu	37	8	28209226	28209228	+	In_Frame_Del	DEL	GCA	GCA	-	rs142343457	byFrequency	TCGA-50-5072-01A-21D-1855-08	TCGA-50-5072-10A-01D-1855-08	GCA	GCA	-	-	GCA	GCA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	3c6dcba5-1312-40ca-b589-07f7d88b3477	96a904cf-e50e-4320-8d23-2dd095845c5e	g.chr8:28209226_28209228delGCA	uc003xgq.2	-	7	1105_1107	c.1017_1019delTGC	c.(1015-1020)GCTGCC>GCC	p.339_340AA>A	ZNF395_uc003xgt.2_In_Frame_Del_p.339_340AA>A|ZNF395_uc003xgr.2_In_Frame_Del_p.339_340AA>A|ZNF395_uc003xgs.2_In_Frame_Del_p.339_340AA>A	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	339_340					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		GGTGCCTgcggcagcagcagcag	0.507			NA											7	162	---	---	---	---	NA	NA	NA	NA	NA
