Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TNFRSF8	943	broad.mit.edu	37	1	12170177	12170177	+	Missense_Mutation	SNP	A	A	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:12170177A>C	uc001atq.2	+	6	814	c.592A>C	c.(592-594)ACC>CCC	p.T198P	TNFRSF8_uc010obc.1_Missense_Mutation_p.T87P	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	198	Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		AAGAGGGGGCACCCGCCTCGC	0.617			NA											6	57					0	0	0.007413	0	0
FAM46B	115572	broad.mit.edu	37	1	27332767	27332767	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:27332767G>A	uc010ofj.1	-	2	1118	c.946C>T	c.(946-948)CTG>TTG	p.L316L		NM_052943	NP_443175	Q96A09	FA46B_HUMAN	hypothetical protein LOC115572	316										central_nervous_system(1)	1		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;7.71e-51)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-29)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000272)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|STAD - Stomach adenocarcinoma(196;0.00114)|READ - Rectum adenocarcinoma(331;0.0419)		TGCTCCACCAGGTCTGGAAAG	0.687			NA											3	32					0	0	0.004672	0	0
NASP	4678	broad.mit.edu	37	1	46083204	46083204	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:46083204G>A	uc001coi.1	+	14	2329	c.2227G>A	c.(2227-2229)GGA>AGA	p.G743R	NASP_uc001coh.1_Missense_Mutation_p.G745R|NASP_uc001coj.1_Missense_Mutation_p.G404R|NASP_uc010olr.1_Missense_Mutation_p.G679R|NASP_uc001col.1_Missense_Mutation_p.G251R	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	743					blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					GGAGGTGAACGGAGGCAGTGG	0.493			NA											3	57					0	0	0.004672	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144874795	144874795	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:144874795G>A	uc001elw.3	-	30	5104	c.4813C>T	c.(4813-4815)CGC>TGC	p.R1605C	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R1561C|PDE4DIP_uc001elv.3_Missense_Mutation_p.R612C	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1605	NBPF.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CTGGGAGAGCGGTGGGAGTCA	0.547			NA	T	PDGFRB	MPD								66	252					0	0	0.00361	0	0
SPTA1	6708	broad.mit.edu	37	1	158631093	158631093	+	Missense_Mutation	SNP	G	G	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:158631093G>T	uc001fst.1	-	18	2770	c.2571C>A	c.(2569-2571)AAC>AAA	p.N857K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	857	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTACCATTTTGTTTCCCCTTT	0.398			NA											83	131					1.59627e-33	2.216e-33	0.00361	1	0
CACNA1E	777	broad.mit.edu	37	1	181708389	181708389	+	Missense_Mutation	SNP	C	C	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:181708389C>A	uc001gow.2	+	25	3884	c.3719C>A	c.(3718-3720)GCG>GAG	p.A1240E	CACNA1E_uc009wxs.2_Missense_Mutation_p.A1128E|CACNA1E_uc001gox.1_Missense_Mutation_p.A466E|CACNA1E_uc009wxt.2_Missense_Mutation_p.A466E	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1240	III.|Helical; Name=S3 of repeat III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TTTGCTCTGGCGTAAGTGACT	0.507			NA											5	162					4.096e-09	5.55549e-09	0.001168	1	0
HMCN1	83872	broad.mit.edu	37	1	186057109	186057109	+	Nonsense_Mutation	SNP	G	G	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:186057109G>T	uc001grq.1	+	61	9638	c.9409G>T	c.(9409-9411)GGA>TGA	p.G3137*		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3137	Ig-like C2-type 29.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAATGTAGCAGGACGGGATGA	0.353			NA											7	80					8.12818e-05	0.00010657	0.001984	1	0
TPR	7175	broad.mit.edu	37	1	186324846	186324846	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:186324846G>A	uc001grv.2	-	16	2240	c.1943C>T	c.(1942-1944)TCA>TTA	p.S648L		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	648					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		AACAGTCTGTGATGTACTTGG	0.408			NA	T	NTRK1	papillary thyroid								30	70					0	0	0.008361	0	0
USH2A	7399	broad.mit.edu	37	1	215963477	215963477	+	Missense_Mutation	SNP	T	T	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:215963477T>A	uc001hku.1	-	51	10493	c.10106A>T	c.(10105-10107)AAA>ATA	p.K3369I		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3369	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATTACAGCATTTCTGGCTCTT	0.393			NA								HNSCC(13;0.011)			18	71					0	0	0.001882	0	0
USH2A	7399	broad.mit.edu	37	1	215963479	215963479	+	Silent	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:215963479C>T	uc001hku.1	-	51	10491	c.10104G>A	c.(10102-10104)CAG>CAA	p.Q3368Q		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3368	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TACAGCATTTCTGGCTCTTTG	0.388			NA								HNSCC(13;0.011)			20	70					0	0	0.00278	0	0
TTC13	79573	broad.mit.edu	37	1	231064840	231064840	+	Splice_Site	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr1:231064840C>T	uc001huf.3	-	12	1332	c.1301_splice	c.e12-1	p.E434_splice	TTC13_uc009xfi.2_Splice_Site_p.E381_splice|TTC13_uc009xfj.2_Splice_Site|TTC13_uc001hug.3_Splice_Site_p.E381_splice|TTC13_uc009xfk.1_Splice_Site_p.E324_splice	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a								binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		CGAGAATACTCTGCAGAAAGG	0.398			NA											27	46					0	0	0.007291	0	0
OR51A7	119687	broad.mit.edu	37	11	4929375	4929375	+	Missense_Mutation	SNP	C	C	G			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr11:4929375C>G	uc010qyq.1	+	1	776	c.776C>G	c.(775-777)GCC>GGC	p.A259G		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	259	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCCTGGCTGCCATGCATCAC	0.493			NA											79	221					0	0	0.00361	0	0
ACP2	53	broad.mit.edu	37	11	47261720	47261720	+	Nonsense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr11:47261720G>A	uc001nei.2	-	11	1336	c.1219C>T	c.(1219-1221)CAG>TAG	p.Q407*	ACP2_uc010rhe.1_Nonsense_Mutation_p.Q379*|ACP2_uc009ylj.2_Nonsense_Mutation_p.Q335*|ACP2_uc010rhf.1_Nonsense_Mutation_p.Q375*|ACP2_uc010rhg.1_Nonsense_Mutation_p.Q344*|ACP2_uc010rhh.1_Nonsense_Mutation_p.Q220*	NM_001610	NP_001601	P11117	PPAL_HUMAN	acid phosphatase 2, lysosomal isoform 1	407	Cytoplasmic (Potential).					integral to membrane|lysosomal lumen|lysosomal membrane	acid phosphatase activity			ovary(1)	1						GGCTGGGCCTGCATCCGGAAG	0.642	Melanoma(90;262 1440 11488 44828 48531)		NA											29	55					0	0	0.005443	0	0
SF1	7536	broad.mit.edu	37	11	64533557	64533557	+	Silent	SNP	G	G	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr11:64533557G>C	uc001obb.1	-	13	2030	c.1653C>G	c.(1651-1653)GCC>GCG	p.A551A	SF1_uc010rnm.1_Intron|SF1_uc010rnn.1_Silent_p.A525A|SF1_uc001oaz.1_Intron|SF1_uc001oba.1_Silent_p.A551A|SF1_uc001obc.1_Intron|SF1_uc001obd.1_Intron|SF1_uc001obe.1_Intron|SF1_uc010rno.1_Intron	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	551	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						GAGAAGCTGCGGCAGCCGCCT	0.682			NA											15	30					0	0	0.00499	0	0
PPFIA1	8500	broad.mit.edu	37	11	70172763	70172763	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr11:70172763G>A	uc001opo.2	+	7	967	c.769G>A	c.(769-771)GAA>AAA	p.E257K	PPFIA1_uc001opn.1_Missense_Mutation_p.E257K|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	257	Potential.				cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			TGAGCTCCAAGAAATCATAAG	0.438			NA											103	259					0	0	0.00361	0	0
C11orf1	64776	broad.mit.edu	37	11	111753869	111753869	+	Missense_Mutation	SNP	T	T	G			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr11:111753869T>G	uc001pmd.2	+	3	623	c.286T>G	c.(286-288)TAC>GAC	p.Y96D	C11orf1_uc001pme.2_Missense_Mutation_p.Y136D	NM_022761	NP_073598	Q9H5F2	CK001_HUMAN	hypothetical protein LOC64776	96						nucleus					0		all_cancers(61;1.26e-15)|all_epithelial(67;9.52e-10)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|Medulloblastoma(222;0.0228)|all_neural(223;0.0281)		all cancers(92;6.28e-09)|Epithelial(105;4.11e-08)|OV - Ovarian serous cystadenocarcinoma(223;1.52e-07)|BRCA - Breast invasive adenocarcinoma(274;1.1e-06)		GTTTGGACACTACTTTGAAAC	0.289			NA											3	15					0	0	0.004672	0	0
FAM55A	120400	broad.mit.edu	37	11	114393191	114393191	+	Missense_Mutation	SNP	G	G	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr11:114393191G>C	uc001ppa.2	-	6	1134	c.717C>G	c.(715-717)ATC>ATG	p.I239M	FAM55A_uc010rxd.1_Missense_Mutation_p.I88M	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	381						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		GTTTCTTAAAGATTCCAGTTT	0.323			NA											15	70					0	0	0.00245	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376143	8376143	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr12:8376143G>A	uc001qui.2	-	6	893	c.334C>T	c.(334-336)CCG>TCG	p.P112S	FAM90A1_uc001quh.2_Missense_Mutation_p.P112S	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	112							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		TTCCTCTGCGGGTCTTGTGGC	0.547			NA											14	46					0	0	0.00499	0	0
SP7	121340	broad.mit.edu	37	12	53723126	53723126	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr12:53723126G>A	uc001sct.2	-	2	207	c.100C>T	c.(100-102)CGG>TGG	p.R34W	SP7_uc001scu.2_Missense_Mutation_p.R16W|SP7_uc001scv.2_Missense_Mutation_p.R34W	NM_152860	NP_690599	Q8TDD2	SP7_HUMAN	osterix	34					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTGAGTCCCGCAGAGGGCTA	0.577			NA											4	83					0	0	0.000248	0	0
LRP1	4035	broad.mit.edu	37	12	57539234	57539234	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr12:57539234G>A	uc001snd.2	+	6	1268	c.802G>A	c.(802-804)GTG>ATG	p.V268M	LRP1_uc010sre.1_Missense_Mutation_p.V268M|LRP1_uc001snb.2_Missense_Mutation_p.V268M|LRP1_uc001snc.1_Missense_Mutation_p.V268M	NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	268	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	AAAGGGCTTCGTGGATGAGCA	0.597			NA											9	110					0	0	0.006214	0	0
CPM	1368	broad.mit.edu	37	12	69260803	69260803	+	Missense_Mutation	SNP	G	G	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr12:69260803G>C	uc001sup.2	-	7	874	c.813C>G	c.(811-813)ATC>ATG	p.I271M	CPM_uc001sur.2_Missense_Mutation_p.I271M|CPM_uc001suq.2_Missense_Mutation_p.I271M	NM_198320	NP_938079	P14384	CBPM_HUMAN	carboxypeptidase M precursor	271					anatomical structure morphogenesis|proteolysis	anchored to membrane|cytoplasm|nucleus|plasma membrane	metallocarboxypeptidase activity|zinc ion binding				0	all_epithelial(5;1.09e-35)|Lung NSC(4;1.47e-33)|all_lung(4;1.02e-31)|Breast(13;1.59e-06)		all cancers(2;2.69e-50)|GBM - Glioblastoma multiforme(2;7.34e-41)|BRCA - Breast invasive adenocarcinoma(5;5.38e-10)|Lung(24;4.61e-05)|LUAD - Lung adenocarcinoma(15;0.000376)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			ACTGGGCCCAGATGTAGTTGT	0.408			NA											14	805					0	0	0.004007	0	0
ATP2A2	488	broad.mit.edu	37	12	110783813	110783813	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr12:110783813G>A	uc001tqk.3	+	19	3312	c.2749G>A	c.(2749-2751)GAA>AAA	p.E917K	ATP2A2_uc001tql.3_Missense_Mutation_p.E917K|ATP2A2_uc010sxy.1_Missense_Mutation_p.E890K|ATP2A2_uc001tqn.3_5'UTR|ATP2A2_uc009zvn.2_5'Flank	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	917	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						CAGCTTGTCCGAAAACCAGTC	0.567			NA											9	52					0	0	0.006214	0	0
SMAD9	4093	broad.mit.edu	37	13	37427571	37427571	+	Silent	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr13:37427571C>T	uc001uvw.2	-	6	1588	c.1245G>A	c.(1243-1245)CGG>CGA	p.R415R	SMAD9_uc001uvx.2_Silent_p.R378R|SMAD9_uc010tep.1_Silent_p.R208R	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	415	MH2.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		CAAAACTCATCCGGATAGTAC	0.448			NA											8	31					0	0	0.004482	0	0
C14orf166B	145497	broad.mit.edu	37	14	77327095	77327095	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr14:77327095G>A	uc001xsx.2	+	11	1278	c.1164G>A	c.(1162-1164)CCG>CCA	p.P388P	C14orf166B_uc010asn.1_Silent_p.P148P|C14orf166B_uc001xsw.2_RNA	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	388											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		CCGTTCACCCGCAGCTGGACG	0.537	Ovarian(165;1056 1958 32571 36789 48728)		NA											14	67					0	0	0.00245	0	0
PDXDC1	23042	broad.mit.edu	37	16	15102638	15102638	+	Silent	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr16:15102638C>T	uc002dda.3	+	7	806	c.582C>T	c.(580-582)CTC>CTT	p.L194L	PDXDC1_uc010uzl.1_Silent_p.L179L|PDXDC1_uc010uzm.1_Silent_p.L103L|PDXDC1_uc010bvc.1_Silent_p.L135L|PDXDC1_uc002dcz.2_Intron|PDXDC1_uc002ddb.3_Silent_p.L167L|PDXDC1_uc010uzn.1_Silent_p.L166L|PDXDC1_uc002ddc.2_Silent_p.L194L	NM_015027	NP_055842	Q6P996	PDXD1_HUMAN	pyridoxal-dependent decarboxylase domain	194					carboxylic acid metabolic process		carboxy-lyase activity|protein binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	TCCTGCAGCTCGGCTTGCCCT	0.458			NA											6	351					0	0	0.001984	0	0
PRDM7	11105	broad.mit.edu	37	16	90128579	90128579	+	Missense_Mutation	SNP	A	A	G			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr16:90128579A>G	uc010cje.2	-	7	652	c.632T>C	c.(631-633)TTC>TCC	p.F211S	PRDM7_uc002fqo.2_Missense_Mutation_p.F5S|PRDM7_uc010cjf.2_Missense_Mutation_p.F94S|PRDM7_uc010cjg.1_Missense_Mutation_p.F5S|PRDM7_uc010cjh.1_RNA	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	211						chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		GTCAATGAAGAAGTTCTGACA	0.507			NA											13	38					0	0	0.003163	0	0
NLGN2	57555	broad.mit.edu	37	17	7311965	7311965	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr17:7311965G>A	uc002ggt.1	+	1	464	c.391G>A	c.(391-393)GCC>ACC	p.A131T		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	131	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				GGAGGCGGCCGCCACCTACGT	0.687			NA											3	22					0	0	0.004672	0	0
PMP22	5376	broad.mit.edu	37	17	15142888	15142888	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr17:15142888G>A	uc002goj.2	-	3	268	c.219C>T	c.(217-219)ATC>ATT	p.I73I	PMP22_uc002gok.2_Silent_p.I73I|PMP22_uc002gol.2_Silent_p.I73I	NM_153322	NP_696997	Q01453	PMP22_HUMAN	peripheral myelin protein 22	73	Helical; (By similarity).				peripheral nervous system development|synaptic transmission	integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0884)|BRCA - Breast invasive adenocarcinoma(8;4.92e-06)		TGCTGAAGATGATCGACAGGA	0.542			NA											11	43					0	0	0.008291	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240794	39240795	+	Missense_Mutation	DNP	CA	CA	AT	rs9894106	by1000genomes	TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr17:39240794_39240795CA>AT	uc010wfn.1	+	1	336_337	c.336_337CA>AT	c.(334-339)CCCAGC>CCATGC	p.S113C		NM_033061	NP_149050			keratin associated protein 4-7												0						gctgccgccccagctgctgccg	0.238			NA											3	9					0	0	0.004672	0	0
CLTC	1213	broad.mit.edu	37	17	57762973	57762973	+	Missense_Mutation	SNP	C	C	G			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr17:57762973C>G	uc002ixq.1	+	30	5074	c.4631C>G	c.(4630-4632)TCT>TGT	p.S1544C	CLTC_uc002ixp.2_Missense_Mutation_p.S1544C|CLTC_uc002ixr.1_Missense_Mutation_p.S1548C	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	1544	Heavy chain arm.|Proximal segment.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GCTTCTGAATCTAAAGATACT	0.368			NA	T	ALK|TFE3	ALCL|renal 								9	141					0	0	0.006214	0	0
BRIP1	83990	broad.mit.edu	37	17	59857699	59857699	+	Missense_Mutation	SNP	T	T	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr17:59857699T>C	uc002izk.1	-	13	1999	c.1858A>G	c.(1858-1860)ATG>GTG	p.M620V	BRIP1_uc002izl.1_Missense_Mutation_p.M1V	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	620					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						AAGGATTTCATTGGTGATAAT	0.303			NA	F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	FanconAnemia				4	211					0	0	0.000248	0	0
HNRNPL	3191	broad.mit.edu	37	19	39330800	39330800	+	Missense_Mutation	SNP	T	T	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr19:39330800T>C	uc010xul.1	-	8	1180	c.1169A>G	c.(1168-1170)GAT>GGT	p.D390G	HNRNPL_uc010ege.1_Missense_Mutation_p.D46G|HNRNPL_uc002ojj.1_Missense_Mutation_p.D46G|HNRNPL_uc002ojo.1_5'Flank|HNRNPL_uc002ojk.2_Missense_Mutation_p.D46G|HNRNPL_uc002ojl.2_Missense_Mutation_p.D46G|HNRNPL_uc010xum.1_Missense_Mutation_p.D257G|HNRNPL_uc002ojp.1_Missense_Mutation_p.D46G|HNRNPL_uc010xun.1_Missense_Mutation_p.I98V	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	390	RRM 3.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			CTTAGATTGATCCAAGCCATA	0.597			NA											43	119					0	0	0.00361	0	0
ZNF155	7711	broad.mit.edu	37	19	44495995	44495995	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr19:44495995G>A	uc002oxy.1	+	4	349	c.144G>A	c.(142-144)GGG>GGA	p.G48G	ZNF155_uc002oxz.1_Silent_p.G48G|ZNF155_uc010xwt.1_Silent_p.G59G	NM_003445	NP_003436	Q12901	ZN155_HUMAN	zinc finger protein 155	48	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Prostate(69;0.0352)				TATTCACAGGGCATCAACCGT	0.433	NSCLC(61;554 1277 20909 42067 42312)		NA											4	209					0	0	0.000248	0	0
LILRA1	11024	broad.mit.edu	37	19	55107879	55107879	+	Missense_Mutation	SNP	A	A	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr19:55107879A>C	uc002qgh.1	+	7	1366	c.1184A>C	c.(1183-1185)TAC>TCC	p.Y395S	LILRA2_uc010yfg.1_Missense_Mutation_p.Y393S|LILRA1_uc010yfh.1_Missense_Mutation_p.Y395S	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	395	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TCGGGGACCTACAGGTGCTAC	0.587			NA											7	248					0	0	0.004482	0	0
ADCY3	109	broad.mit.edu	37	2	25057771	25057771	+	Missense_Mutation	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr2:25057771C>T	uc002rfs.3	-	9	1896	c.1697G>A	c.(1696-1698)AGG>AAG	p.R566K	ADCY3_uc002rfr.3_Missense_Mutation_p.R199K|ADCY3_uc010ykm.1_Missense_Mutation_p.R566K	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	566	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					CAGGCGCAGCCTCCGGCGTGG	0.642			NA											9	30					0	0	0.004482	0	0
C2orf71	388939	broad.mit.edu	37	2	29296770	29296770	+	Missense_Mutation	SNP	C	C	G	rs140625913	by1000genomes	TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr2:29296770C>G	uc002rmt.1	-	1	358	c.358G>C	c.(358-360)GGT>CGT	p.G120R		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	120					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CCATGGGAACCCTGTGTCTTG	0.453			NA											57	125					0	0	0.00361	0	0
VIL1	7429	broad.mit.edu	37	2	219301247	219301247	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr2:219301247G>A	uc002via.2	+	16	1934	c.1869G>A	c.(1867-1869)GAG>GAA	p.E623E	VIL1_uc010zke.1_Silent_p.E312E|VIL1_uc002vib.2_Silent_p.E623E	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	623	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCTCTTTGAGTGTTCCAACA	0.507			NA											89	153					0	0	0.00361	0	0
WDR69	164781	broad.mit.edu	37	2	228762983	228762983	+	Missense_Mutation	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr2:228762983C>T	uc002vpn.1	+	6	605	c.526C>T	c.(526-528)CAT>TAT	p.H176Y	WDR69_uc010zlw.1_Missense_Mutation_p.H161Y|WDR69_uc002vpo.1_RNA	NM_178821	NP_849143	Q8N136	WDR69_HUMAN	WD repeat domain 69	176	WD 3.									breast(1)	1		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;1.22e-10)|all cancers(144;8.11e-08)|Lung(261;0.011)|LUSC - Lung squamous cell carcinoma(224;0.0148)		CTTCAGGGGTCATACAGCAGA	0.234			NA											10	54					0	0	0.008291	0	0
HAO1	54363	broad.mit.edu	37	20	7866404	7866404	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr20:7866404G>A	uc002wmw.1	-	6	945	c.921C>T	c.(919-921)GGC>GGT	p.G307G	HAO1_uc010gbu.2_Silent_p.G307G	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	307	FMN hydroxy acid dehydrogenase.|FMN (By similarity).				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						CAGCCTTGGCGCCAAGAGCCA	0.483			NA											14	70					0	0	0.00245	0	0
C20orf114	92747	broad.mit.edu	37	20	31890785	31890785	+	Missense_Mutation	SNP	T	T	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr20:31890785T>C	uc002wyw.1	+	11	1206	c.1045T>C	c.(1045-1047)TTT>CTT	p.F349L	C20orf114_uc002wyx.1_RNA	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	349						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						TCCCGAGTTTTTTATAGACCA	0.527			NA											13	61					0	0	0.003163	0	0
EPB41L1	2036	broad.mit.edu	37	20	34797690	34797690	+	Missense_Mutation	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr20:34797690C>T	uc002xfb.2	+	15	2120	c.1949C>T	c.(1948-1950)TCG>TTG	p.S650L	EPB41L1_uc002xeu.2_Missense_Mutation_p.S576L|EPB41L1_uc010zvo.1_Missense_Mutation_p.S650L|EPB41L1_uc002xev.2_Missense_Mutation_p.S650L|EPB41L1_uc002xew.2_Missense_Mutation_p.S541L|EPB41L1_uc002xex.2_Intron|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Missense_Mutation_p.S576L|EPB41L1_uc010gfq.2_Missense_Mutation_p.S749L	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	650					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					AAAAGCGACTCGGACACTGAG	0.632			NA											9	29					0	0	0.004482	0	0
C20orf195	79025	broad.mit.edu	37	20	62187706	62187706	+	Silent	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr20:62187706C>T	uc002yfj.2	+	2	782	c.690C>T	c.(688-690)GTC>GTT	p.V230V	C20orf195_uc002yfk.2_Silent_p.V230V	NM_024059	NP_076964	Q9BVV2	CT195_HUMAN	hypothetical protein LOC79025	230											0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			GCTGGTTCGTCACCATCCAGC	0.647			NA											39	125					0	0	0.006999	0	0
GMEB2	26205	broad.mit.edu	37	20	62234341	62234341	+	Missense_Mutation	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr20:62234341C>T	uc002yfp.1	-	3	813	c.334G>A	c.(334-336)GGC>AGC	p.G112S	GMEB2_uc002yfo.1_Missense_Mutation_p.G34S|GMEB2_uc002yfq.1_Missense_Mutation_p.G112S	NM_012384	NP_036516	Q9UKD1	GMEB2_HUMAN	glucocorticoid modulatory element binding	112	SAND.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|metal ion binding				0	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;4.79e-09)|all cancers(9;2.76e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(5;0.0114)			ACATTGATGCCGGGACACACA	0.557			NA											15	119					0	0	0.004007	0	0
ADAMTS1	9510	broad.mit.edu	37	21	28212371	28212371	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr21:28212371G>A	uc002ymf.2	-	6	2130	c.1675C>T	c.(1675-1677)CAT>TAT	p.H559Y		NM_006988	NP_008919	Q9UHI8	ATS1_HUMAN	ADAM metallopeptidase with thrombospondin type 1	559	Disintegrin.|TSP type-1 1.				integrin-mediated signaling pathway|negative regulation of cell proliferation|proteolysis		heparin binding|zinc ion binding			lung(3)|large_intestine(2)|central_nervous_system(1)	6		Breast(209;0.000962)		Lung(58;0.215)		CAGCTTCCATGAAAAGGCGTC	0.463			NA											4	116					0	0	0.001168	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671440	39671440	+	Missense_Mutation	SNP	A	A	G			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr21:39671440A>G	uc002ywv.2	+	4	559	c.257A>G	c.(256-258)TAT>TGT	p.Y86C	KCNJ15_uc002yww.2_Missense_Mutation_p.Y86C|KCNJ15_uc002ywx.2_Missense_Mutation_p.Y86C	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	86	Helical; Name=M1; (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						GTCATCTACTATGCCATCGCG	0.488			NA											54	213					0	0	0.00361	0	0
OR11H1	81061	broad.mit.edu	37	22	16449695	16449695	+	Missense_Mutation	SNP	G	G	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr22:16449695G>T	uc011agd.1	-	1	110	c.110C>A	c.(109-111)ACA>AAA	p.T37K		NM_001005239	NP_001005239	Q8NG94	O11H1_HUMAN	olfactory receptor, family 11, subfamily H,	37	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.208)		Kidney(3;0.00216)|KIRC - Kidney renal clear cell carcinoma(3;0.00244)|Lung(27;0.0724)|COAD - Colon adenocarcinoma(3;0.211)		GATCTGAATTGTCCACTCACA	0.428			NA											10	126					1.22574e-08	1.6436e-08	0.002299	1	0
KCNJ4	3761	broad.mit.edu	37	22	38824042	38824042	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr22:38824042G>A	uc003avs.1	-	2	193	c.96C>T	c.(94-96)TTC>TTT	p.F32F	KCNJ4_uc003avt.1_Silent_p.F32F	NM_004981	NP_004972	P48050	IRK4_HUMAN	potassium inwardly-rectifying channel J4	32	Cytoplasmic (By similarity).				synaptic transmission	basolateral plasma membrane|voltage-gated potassium channel complex	inward rectifier potassium channel activity|PDZ domain binding				0	Melanoma(58;0.0286)					TCAGGTTGGCGAAGTACACGT	0.627			NA											63	211					0	0	0.00361	0	0
STAC	6769	broad.mit.edu	37	3	36484872	36484872	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr3:36484872G>A	uc003cgh.1	+	2	167	c.128G>A	c.(127-129)CGA>CAA	p.R43Q	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Missense_Mutation_p.R43Q	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	43					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						AAACTAAAACGATCACTTTCT	0.468			NA											4	23					0	0	0.000248	0	0
XRN1	54464	broad.mit.edu	37	3	142133085	142133085	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr3:142133085G>A	uc003eus.2	-	14	1552	c.1485C>T	c.(1483-1485)ATC>ATT	p.I495I	XRN1_uc010huu.2_5'Flank|XRN1_uc003eut.2_Silent_p.I495I|XRN1_uc003euu.2_Silent_p.I495I|XRN1_uc003euv.1_Silent_p.I356I	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	495					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						TGAGTGTACTGATGTTGTGTA	0.343			NA											16	79					0	0	0.00499	0	0
TRIML2	205860	broad.mit.edu	37	4	189012797	189012797	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr4:189012797G>A	uc003izl.2	-	7	930	c.894C>T	c.(892-894)ACC>ACT	p.T298T	TRIML2_uc003izj.1_Silent_p.T126T|TRIML2_uc003izk.1_Silent_p.T106T|TRIML2_uc011cle.1_Silent_p.T373T	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	298	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GAGTCCACTCGGTCCCCATCA	0.577			NA											35	166					0	0	0.003755	0	0
NSUN2	54888	broad.mit.edu	37	5	6632745	6632745	+	Missense_Mutation	SNP	A	A	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr5:6632745A>C	uc003jdu.2	-	2	286	c.221T>G	c.(220-222)CTC>CGC	p.L74R	NSUN2_uc011cmk.1_Missense_Mutation_p.L74R|NSUN2_uc003jdv.2_5'UTR|SRD5A1_uc003jdw.2_5'Flank|SRD5A1_uc011cml.1_5'Flank|SRD5A1_uc011cmm.1_5'Flank	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	74						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						AGTGGCCGGGAGCGGCTCCCT	0.557			NA											4	133					0	0	0.000248	0	0
RANBP17	64901	broad.mit.edu	37	5	170610377	170610377	+	Missense_Mutation	SNP	T	T	G			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr5:170610377T>G	uc003mba.2	+	18	1997	c.1981T>G	c.(1981-1983)TTC>GTC	p.F661V	RANBP17_uc003mbb.2_5'UTR|RANBP17_uc003mbd.2_Missense_Mutation_p.F24V|RANBP17_uc010jjs.2_RNA|RANBP17_uc003mbc.2_Missense_Mutation_p.F24V	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	661					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCTCAGCGACTTCAGGTGTCG	0.403			NA	T	TRD@	ALL								29	70					0	0	0.008361	0	0
BTN2A1	11120	broad.mit.edu	37	6	26466290	26466290	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr6:26466290G>A	uc003nib.1	+	7	1168	c.956G>A	c.(955-957)CGA>CAA	p.R319Q	BTN2A1_uc003nic.1_Missense_Mutation_p.R319Q|BTN2A1_uc003nid.1_Missense_Mutation_p.R167Q|BTN2A1_uc011dko.1_Missense_Mutation_p.R258Q|BTN2A1_uc010jqk.1_Missense_Mutation_p.R79Q	NM_007049	NP_008980	Q7KYR7	BT2A1_HUMAN	butyrophilin, subfamily 2, member A1 isoform 1	319	Cytoplasmic (Potential).|B30.2/SPRY.				lipid metabolic process	integral to plasma membrane				ovary(1)|skin(1)	2						TCCCTTGCAGGATGGAGAAGA	0.448			NA											24	160					0	0	0.00333	0	0
HLA-A	3105	broad.mit.edu	37	6	29911194	29911194	+	Nonsense_Mutation	SNP	C	C	T	rs41541518		TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr6:29911194C>T	uc003nol.2	+	3	493	c.493C>T	c.(493-495)CAG>TAG	p.Q165*	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_RNA|HLA-A_uc010jrq.2_Nonsense_Mutation_p.Q44*|HLA-A_uc003nok.2_Nonsense_Mutation_p.Q44*|HLA-A_uc003non.2_Nonsense_Mutation_p.Q165*|HLA-A_uc003noo.2_Nonsense_Mutation_p.Q165*|HLA-A_uc010jrr.2_Nonsense_Mutation_p.Q165*|HLA-A_uc003nom.2_Nonsense_Mutation_p.Q44*|HLA-A_uc010klp.2_Nonsense_Mutation_p.Q137*|HLA-A_uc011dmc.1_Nonsense_Mutation_p.Q44*|HLA-A_uc011dmd.1_Nonsense_Mutation_p.Q44*	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	165	Extracellular (Potential).|Alpha-2.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CATGGCGGCTCAGATCACCAA	0.652			NA							Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			9	28					0	0	0.004482	0	0
GNL1	2794	broad.mit.edu	37	6	30522868	30522868	+	Missense_Mutation	SNP	C	C	G			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr6:30522868C>G	uc003nqh.2	-	3	1368	c.340G>C	c.(340-342)GAG>CAG	p.E114Q	GNL1_uc011dmi.1_5'UTR|GNL1_uc011dmj.1_Missense_Mutation_p.E112Q|GNL1_uc011dmk.1_Intron|PRR3_uc003nqi.1_5'Flank|PRR3_uc003nqj.1_5'Flank	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	114					response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						ATGTCCAGCTCCAACAACTCA	0.552			NA											14	97					0	0	0.001855	0	0
GNL1	2794	broad.mit.edu	37	6	30522939	30522939	+	Missense_Mutation	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr6:30522939C>T	uc003nqh.2	-	3	1297	c.269G>A	c.(268-270)AGG>AAG	p.R90K	GNL1_uc011dmi.1_5'UTR|GNL1_uc011dmj.1_Missense_Mutation_p.R88K|GNL1_uc011dmk.1_Intron|PRR3_uc003nqi.1_5'Flank|PRR3_uc003nqj.1_5'Flank	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	90					response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						TACCTCCTCCCTGCTGTCTCT	0.537			NA											45	198					0	0	0.002222	0	0
DNAH8	1769	broad.mit.edu	37	6	38840727	38840727	+	Nonsense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr6:38840727G>A	uc003ooe.1	+	49	7232	c.6632G>A	c.(6631-6633)TGG>TAG	p.W2211*		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GATGCCATCTGGATTGAGAAC	0.358			NA											35	77					0	0	0.002836	0	0
WASF1	8936	broad.mit.edu	37	6	110424684	110424684	+	Missense_Mutation	SNP	G	G	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr6:110424684G>C	uc003ptv.1	-	9	1627	c.790C>G	c.(790-792)CTG>GTG	p.L264V	WASF1_uc003ptw.1_Missense_Mutation_p.L264V|WASF1_uc003ptx.1_Missense_Mutation_p.L264V|WASF1_uc003pty.1_Missense_Mutation_p.L264V	NM_003931	NP_003922	Q92558	WASF1_HUMAN	Wiskott-Aldrich syndrome protein family member	264					actin filament polymerization|cellular component movement	actin cytoskeleton	actin binding				0		all_cancers(87;1.18e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		OV - Ovarian serous cystadenocarcinoma(136;0.0364)|Epithelial(106;0.051)|all cancers(137;0.0687)		GCTCTAGTCAGAAGCTCACTC	0.443			NA											5	111					0	0	0.000602	0	0
REV3L	5980	broad.mit.edu	37	6	111632428	111632428	+	Missense_Mutation	SNP	G	G	A	rs142379750		TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr6:111632428G>A	uc003puy.3	-	29	8962	c.8639C>T	c.(8638-8640)ACG>ATG	p.T2880M	REV3L_uc003pux.3_Missense_Mutation_p.T2802M|REV3L_uc003puz.3_Missense_Mutation_p.T2802M|REV3L_uc003pva.1_RNA|REV3L_uc003puw.3_5'Flank	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	2880					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		TATATCTCTCGTTTCAAATAG	0.333			NA						DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					39	243					0	0	0.006999	0	0
RSPH10B2	728194	broad.mit.edu	37	7	6803562	6803562	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr7:6803562G>A	uc003sqw.1	+	6	674	c.403G>A	c.(403-405)GAC>AAC	p.D135N	RSPH10B2_uc010ktk.1_Missense_Mutation_p.D135N|RSPH10B2_uc011jxc.1_5'UTR|RSPH10B2_uc010ktl.1_5'Flank	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	135	MORN 3.									ovary(1)|pancreas(1)|skin(1)	3						GCTTCAGGGCGACTTTGTGAA	0.612			NA											5	41					0	0	0.001984	0	0
ANKMY2	57037	broad.mit.edu	37	7	16640525	16640525	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr7:16640525G>A	uc003sti.2	-	10	1387	c.1187C>T	c.(1186-1188)CCA>CTA	p.P396L	ANKMY2_uc010ktz.2_RNA	NM_020319	NP_064715	Q8IV38	ANKY2_HUMAN	ankyrin repeat and MYND domain containing 2	396						cilium	zinc ion binding			central_nervous_system(1)	1	Lung NSC(10;0.103)|all_lung(11;0.204)			UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		TTCAGCCTCTGGTTGCTCTTC	0.333			NA											4	68					0	0	0.000248	0	0
TRIL	9865	broad.mit.edu	37	7	28996325	28996325	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr7:28996325G>A	uc003szt.2	-	3	1705	c.1338C>T	c.(1336-1338)CTC>CTT	p.L446L	uc003szu.1_5'Flank	NM_014817	NP_055632	Q7L0X0	TRIL_HUMAN	TLR4 interactor with leucine rich repeats	446	Extracellular (Potential).				inflammatory response|innate immune response|regulation of cytokine production involved in immune response|toll-like receptor 4 signaling pathway	lipopolysaccharide receptor complex	lipopolysaccharide binding				0						GCTCCTCCGCGAGACCTGCAG	0.721			NA											5	24					0	0	0.000602	0	0
WNT16	51384	broad.mit.edu	37	7	120969620	120969620	+	Splice_Site	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr7:120969620G>A	uc003vjw.2	+	2	353	c.96_splice	c.e2-1	p.M32_splice	WNT16_uc003vjv.2_Splice_Site_p.W22_splice|WNT16_uc010lkl.2_5'Flank	NM_057168	NP_476509	Q9UBV4	WNT16_HUMAN	wingless-type MMTV integration site family,						anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|keratinocyte differentiation|keratinocyte proliferation|negative regulation of cell death|optic cup formation involved in camera-type eye development|oxidative stress-induced premature senescence|positive regulation of gene expression|positive regulation of JNK cascade|positive regulation of phosphatidylinositol 3-kinase cascade|replicative senescence|Wnt receptor signaling pathway, calcium modulating pathway	cytoplasm|extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled binding|signal transducer activity			lung(2)|ovary(2)|large_intestine(1)	5	all_neural(327;0.117)					GTGTCTTACAGGTGGTTGGGC	0.582			NA											12	94					0	0	0.003163	0	0
KEL	3792	broad.mit.edu	37	7	142640391	142640391	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr7:142640391G>A	uc003wcb.2	-	16	1953	c.1743C>T	c.(1741-1743)CAC>CAT	p.H581H		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	581	Extracellular (Potential).	Zinc; catalytic (By similarity).			proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GCAACAGCTCGTGGGCCATGA	0.557			NA											7	23					0	0	0.001984	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145773476	145773476	+	Missense_Mutation	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr8:145773476C>T	uc003zdt.1	-	6	1549	c.994G>A	c.(994-996)GTG>ATG	p.V332M	ARHGAP39_uc011llk.1_Missense_Mutation_p.V332M|ARHGAP39_uc003zds.1_Missense_Mutation_p.V332M	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	332	Pro-rich.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						TCGAATTGCACGTCCATGGGG	0.706			NA											17	20					0	0	0.00499	0	0
RASEF	158158	broad.mit.edu	37	9	85597694	85597694	+	Silent	SNP	T	T	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr9:85597694T>C	uc004amo.1	-	17	2382	c.2121A>G	c.(2119-2121)GAA>GAG	p.E707E		NM_152573	NP_689786	Q8IZ41	RASEF_HUMAN	RAS and EF-hand domain containing	707					protein transport|small GTPase mediated signal transduction	perinuclear region of cytoplasm	calcium ion binding|GTP binding			upper_aerodigestive_tract(1)|lung(1)|breast(1)	3						TCTTTTTCACTTCTCTgagac	0.299			NA											3	78					0	0	0.004672	0	0
ZNF483	158399	broad.mit.edu	37	9	114293154	114293154	+	Splice_Site	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr9:114293154G>A	uc004bff.2	+	3	637	c.413_splice	c.e3-1	p.D138_splice	ZNF483_uc011lwq.1_Splice_Site_p.D138_splice|ZNF483_uc004bfg.2_Splice_Site_p.D138_splice	NM_133464	NP_597721	Q8TF39	ZN483_HUMAN	zinc finger protein 483 isoform a						viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1						CCCTTTCCTAGATCCAGTCTC	0.328			NA											15	88					0	0	0.003163	0	0
SLC46A2	57864	broad.mit.edu	37	9	115651960	115651960	+	Silent	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr9:115651960G>A	uc004bgk.2	-	1	1234	c.1002C>T	c.(1000-1002)AGC>AGT	p.S334S		NM_033051	NP_149040	Q9BY10	TSCOT_HUMAN	solute carrier family 46, member 2	334	Helical; Name=8; (Potential).					integral to membrane|plasma membrane	symporter activity			central_nervous_system(1)	1						CACCCAGGAAGCTGGTGATGA	0.557			NA											42	19					0	0	0.002222	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811410	5811410	+	Nonsense_Mutation	SNP	C	C	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chrX:5811410C>T	uc010ndh.2	-	6	2400	c.1899G>A	c.(1897-1899)TGG>TGA	p.W633*	NLGN4X_uc004crp.2_Nonsense_Mutation_p.W653*|NLGN4X_uc004crq.2_Nonsense_Mutation_p.W633*|NLGN4X_uc010ndi.2_Nonsense_Mutation_p.W670*|NLGN4X_uc004crr.2_Nonsense_Mutation_p.W633*|NLGN4X_uc010ndj.2_Nonsense_Mutation_p.W633*	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	633	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						TGGTGGTTGGCCATATCTTGG	0.498			NA											26	724					0	0	0.003954	0	0
EIF2S3	1968	broad.mit.edu	37	X	24094881	24094881	+	Missense_Mutation	SNP	G	G	T			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chrX:24094881G>T	uc004dbc.2	+	12	1419	c.1398G>T	c.(1396-1398)AAG>AAT	p.K466N		NM_001415	NP_001406	P41091	IF2G_HUMAN	eukaryotic translation initiation factor 2,	466						cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			lung(1)	1						TGACAATCAAGCCAACAGTAG	0.343			NA											35	837					4.67007e-22	6.40776e-22	0.00874	1	0
PORCN	64840	broad.mit.edu	37	X	48368171	48368171	+	Splice_Site	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chrX:48368171G>A	uc010nie.1	+	2	122	c.-36_splice	c.e2-1		PORCN_uc004djq.1_Missense_Mutation_p.R101K|PORCN_uc004djr.1_Splice_Site|PORCN_uc004djs.1_Splice_Site|PORCN_uc004djt.1_Splice_Site|PORCN_uc011mlx.1_5'UTR|PORCN_uc004dju.1_Splice_Site|PORCN_uc004djv.1_5'Flank|PORCN_uc004djw.1_5'Flank	NM_203475	NP_982301	Q9H237	PORCN_HUMAN	porcupine isoform D						Wnt receptor signaling pathway	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(2)|central_nervous_system(1)	3						TGCTTTGACAGATCTATCCAT	0.577			NA											3	21					0	0	0.004672	0	0
GPR174	84636	broad.mit.edu	37	X	78427197	78427197	+	Missense_Mutation	SNP	G	G	A			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chrX:78427197G>A	uc004edg.1	+	1	729	c.693G>A	c.(691-693)ATG>ATA	p.M231I		NM_032553	NP_115942	Q9BXC1	GP174_HUMAN	putative purinergic receptor FKSG79	231	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)|central_nervous_system(1)	2						CCTTGAAGATGATTCTAACCT	0.393			NA								HNSCC(63;0.18)			41	57					0	0	0.007835	0	0
PLXNA3	55558	broad.mit.edu	37	X	153698805	153698805	+	Silent	SNP	G	G	C			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chrX:153698805G>C	uc004flm.2	+	30	5180	c.5007G>C	c.(5005-5007)GTG>GTC	p.V1669V		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	1669	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AGAAGTTCGTGGATGACCTCT	0.607			NA											27	52					0	0	0.005443	0	0
XPOT	11260	broad.mit.edu	37	12	64812755	64812755	+	Frame_Shift_Del	DEL	T	T	-			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr12:64812755delT	uc001ssb.2	+	6	796	c.370delT	c.(370-372)TTTfs	p.F124fs	XPOT_uc009zqm.1_Frame_Shift_Del_p.F34fs	NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	124	Necessary for interaction with Ran, nuclear localization and nuclear import.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		GTGGCCCAAGTTTTTTTTTGA	0.443			NA											7	478	---	---	---	---	NA	NA	NA	NA	NA
CCDC123	84902	broad.mit.edu	37	19	33406382	33406382	+	Frame_Shift_Del	DEL	T	T	-	rs145281633		TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr19:33406382delT	uc002nty.2	-	14	1515	c.1426delA	c.(1426-1428)ACCfs	p.T476fs	CCDC123_uc002ntx.2_Frame_Shift_Del_p.T229fs|CCDC123_uc010edg.2_RNA|CCDC123_uc002ntz.1_Frame_Shift_Del_p.T475fs	NM_032816	NP_116205	Q96ST8	CEP89_HUMAN	coiled-coil domain containing 123	476	Potential.					centrosome|spindle pole					0	Esophageal squamous(110;0.137)					TGGCCGTGGGTTTTTGCCTCC	0.443			NA											7	424	---	---	---	---	NA	NA	NA	NA	NA
WDR62	284403	broad.mit.edu	37	19	36583666	36583668	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	GCA	GCA	-	-	GCA	GCA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr19:36583666_36583668delGCA	uc002odc.2	+	19	2377_2379	c.2286_2288delGCA	c.(2284-2289)CGGCAG>CGG	p.Q766del	WDR62_uc002odd.2_In_Frame_Del_p.Q766del	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	766					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TTGACCACCGGCAGCAGCAGCAG	0.567			NA											9	647	---	---	---	---	NA	NA	NA	NA	NA
LYPD3	27076	broad.mit.edu	37	19	43969653	43969655	+	In_Frame_Del	DEL	AGC	AGC	-	rs141441894	byFrequency	TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	AGC	AGC	-	-	AGC	AGC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr19:43969653_43969655delAGC	uc002owl.1	-	1	177_179	c.69_71delGCT	c.(67-72)CTGCTT>CTT	p.23_24LL>L	LYPD3_uc002owm.2_In_Frame_Del_p.23_24LL>L	NM_014400	NP_055215	O95274	LYPD3_HUMAN	GPI-anchored metastasis-associated protein	23_24						anchored to plasma membrane				pancreas(1)	1		Prostate(69;0.0153)				ACCTCCGCGAAGCAGCAGCAGCA	0.675			NA											9	244	---	---	---	---	NA	NA	NA	NA	NA
MET	4233	broad.mit.edu	37	7	116412042	116412045	+	Splice_Site	DEL	AGGT	AGGT	-			TCGA-50-6597-01A-11D-1855-08	TCGA-50-6597-10A-01D-1855-08	AGGT	AGGT	-	-	AGGT	AGGT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	cd0aeed5-93a1-4287-8a88-fe6b7b5e3983	32788069-6806-4112-afe3-28e731a6d8db	g.chr7:116412042_116412045delAGGT	uc003vij.2	+	14	3215	c.3028_splice	c.e14+1	p.D1010_splice	MET_uc010lkh.2_Splice_Site_p.D1028_splice|MET_uc011knj.1_Splice_Site_p.D580_splice	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor						axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding	p.982_1028del47(4)|p.L982_D1028del(3)|p.?(3)|p.D981_D1028del(1)		upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CTTTTCCAGAAGGTATATTTCAGT	0.343			NA	Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				13	34	---	---	---	---	NA	NA	NA	NA	NA
