Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SDF4	51150	broad.mit.edu	37	1	1159219	1159219	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr1:1159219G>A	uc001adh.3	-	3	785	c.456C>T	c.(454-456)GAC>GAT	p.D152D	SDF4_uc001adg.2_5'Flank|SDF4_uc001adi.3_Silent_p.D152D|SDF4_uc009vjv.2_Silent_p.D30D|SDF4_uc009vjw.2_RNA|SDF4_uc001adj.1_Silent_p.D30D	NM_016176	NP_057260	Q9BRK5	CAB45_HUMAN	stromal cell derived factor 4 isoform 2	152	EF-hand 2.|2 (Potential).				cerebellum development|fat cell differentiation|response to ethanol|UV protection|zymogen granule exocytosis	bleb|Golgi lumen|late endosome|soluble fraction	calcium ion binding|calcium ion binding|identical protein binding|protein binding			upper_aerodigestive_tract(1)|large_intestine(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;7.85e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.42e-21)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;4.83e-05)|Kidney(185;0.00252)|BRCA - Breast invasive adenocarcinoma(365;0.00263)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0368)|Lung(427;0.204)		TACCGTCCCCGTCAGGGTCCA	0.697			NA											7	22					0	0	0.001984	0	0
NOL9	79707	broad.mit.edu	37	1	6610657	6610657	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr1:6610657T>A	uc001ans.2	-	2	434	c.415A>T	c.(415-417)ATC>TTC	p.I139F	NOL9_uc010nzs.1_RNA	NM_024654	NP_078930	Q5SY16	NOL9_HUMAN	nucleolar protein 9	139					maturation of 5.8S rRNA	nucleolus	ATP binding|polynucleotide 5'-hydroxyl-kinase activity|RNA binding			skin(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;2.46e-35)|all_epithelial(116;1.41e-22)|all_lung(118;7.59e-07)|Lung NSC(185;4.28e-06)|Colorectal(325;4.52e-05)|Breast(487;0.000353)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.47e-07)|COAD - Colon adenocarcinoma(227;1.47e-05)|Kidney(185;5.27e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|BRCA - Breast invasive adenocarcinoma(365;0.00113)|STAD - Stomach adenocarcinoma(132;0.0017)|READ - Rectum adenocarcinoma(331;0.0649)		ACACGACAGATCCCACTAAAA	0.398			NA											15	108					0	0	0.00245	0	0
ZNF687	57592	broad.mit.edu	37	1	151260444	151260444	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr1:151260444C>G	uc001exq.2	+	2	1775	c.1677C>G	c.(1675-1677)ATC>ATG	p.I559M	ZNF687_uc001exp.1_Missense_Mutation_p.I568M|ZNF687_uc009wmo.2_Missense_Mutation_p.I559M|ZNF687_uc009wmp.2_Missense_Mutation_p.I559M	NM_020832	NP_065883	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	559					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			central_nervous_system(3)|ovary(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GCATGCGCATCGAGGTCACCT	0.627			NA											63	112					0	0	0.01441	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155932776	155932776	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr1:155932776C>A	uc001fmt.2	-	8	1041	c.923G>T	c.(922-924)GGC>GTC	p.G308V	ARHGEF2_uc001fmr.2_Missense_Mutation_p.G280V|ARHGEF2_uc001fms.2_Missense_Mutation_p.G307V|ARHGEF2_uc001fmu.2_Missense_Mutation_p.G352V|ARHGEF2_uc010pgt.1_Missense_Mutation_p.G281V|ARHGEF2_uc010pgu.1_Missense_Mutation_p.G353V	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	308	DH.				actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CCGGGTGCTGCCAGGGCACAG	0.597	Melanoma(178;35 2768 6610 28839)		NA											23	151					9.95505e-16	1.12275e-15	0.014323	1	0
PDC	5132	broad.mit.edu	37	1	186413131	186413131	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr1:186413131C>A	uc001gsa.2	-	4	794	c.721G>T	c.(721-723)GAA>TAA	p.E241*	PDC_uc001grz.2_Nonsense_Mutation_p.E189*	NM_002597	NP_002588	P20941	PHOS_HUMAN	phosducin isoform a	241					G-protein coupled receptor protein signaling pathway|phototransduction|visual perception	actin cytoskeleton|cytosol|nucleus|photoreceptor inner segment|photoreceptor outer segment	phospholipase inhibitor activity			skin(1)	1		Breast(1374;1.53e-05)		KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.0129)		TCTTCTTCTTCTATTTTGGTA	0.353			NA											8	221					0.000157383	0.000171069	0.00308	1	0
PIK3C2B	5287	broad.mit.edu	37	1	204410669	204410669	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr1:204410669T>C	uc001haw.2	-	22	3658	c.3179A>G	c.(3178-3180)AAT>AGT	p.N1060S	PIK3C2B_uc010pqv.1_Missense_Mutation_p.N1032S	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1060					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GGGGACAGCATTGGAGTTGAA	0.507			NA											16	82					0	0	0.006122	0	0
OBSCN	84033	broad.mit.edu	37	1	228404762	228404762	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr1:228404762C>G	uc009xez.1	+	8	2470	c.2426C>G	c.(2425-2427)GCC>GGC	p.A809G	OBSCN_uc001hsn.2_Missense_Mutation_p.A809G	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	809	Ig-like 8.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGTGTGGATGCCGTGGCTGGG	0.647			NA											6	23					0	0	0.00499	0	0
CAPN9	10753	broad.mit.edu	37	1	230931001	230931001	+	Silent	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr1:230931001C>T	uc001htz.1	+	18	2076	c.1963C>T	c.(1963-1965)CTG>TTG	p.L655L	CAPN9_uc009xfg.1_Silent_p.L592L|CAPN9_uc001hua.1_Silent_p.L629L	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	655	Domain IV.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				CCTCAACTGCCTGGTCCGGCT	0.597			NA											3	49					0	0	0.004672	0	0
GATA3	2625	broad.mit.edu	37	10	8106012	8106012	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr10:8106012G>A	uc001ika.2	+	4	1389	c.832G>A	c.(832-834)GGC>AGC	p.G278S	GATA3_uc001ijz.2_Missense_Mutation_p.G279S	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	278	GATA-type 1.				aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						GCGGCGAGATGGCACGGGACA	0.557			NA	F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						34	137					0	0	0.003271	0	0
ITGA8	8516	broad.mit.edu	37	10	15697389	15697389	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr10:15697389C>A	uc001ioc.1	-	11	965	c.965G>T	c.(964-966)GGA>GTA	p.G322V	ITGA8_uc010qcb.1_Missense_Mutation_p.G307V	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	322	Extracellular (Potential).|FG-GAP 5.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						AACGGTATATCCAAAATAAGA	0.318			NA											14	120					4.3838e-07	4.87089e-07	0.001855	1	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	A	G	rs2257765		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453			NA											4	99					0	0	0.009096	0	0
PARG	8505	broad.mit.edu	37	10	51093329	51093329	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr10:51093329C>T	uc001jif.2	-	8	2011	c.1750G>A	c.(1750-1752)GCA>ACA	p.A584T	PARG_uc001jih.2_Missense_Mutation_p.A584T|PARG_uc001jig.2_Missense_Mutation_p.A170T|PARG_uc010qgv.1_Intron|PARG_uc009xoi.2_Intron|PARG_uc010qgw.1_Missense_Mutation_p.A475T|PARG_uc009xoj.2_Missense_Mutation_p.A135T|PARG_uc010qgx.1_Missense_Mutation_p.A502T	NM_003631	NP_003622	Q86W56	PARG_HUMAN	poly (ADP-ribose) glycohydrolase	584					carbohydrate metabolic process	nucleus	poly(ADP-ribose) glycohydrolase activity			ovary(2)	2				Epithelial(53;0.213)		TGAGCTTCTGCTTCTTCAAGT	0.318			NA											4	100					0	0	0.009096	0	0
C10orf12	26148	broad.mit.edu	37	10	98742267	98742267	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr10:98742267G>A	uc001kmv.2	+	1	1227	c.1120G>A	c.(1120-1122)GAT>AAT	p.D374N	C10orf12_uc009xvg.1_Missense_Mutation_p.D684N	NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	374										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		AGTCAGTGAAGATGTCATTTC	0.517			NA											20	224					0	0	0.008871	0	0
MUC5B	727897	broad.mit.edu	37	11	1265999	1265999	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr11:1265999T>C	uc009ycr.1	+	48	9929	c.9803T>C	c.(9802-9804)CTT>CCT	p.L3268P	MUC5B_uc001ltb.2_Missense_Mutation_p.L2633P	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2630	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.			Missing (in Ref. 6; AAB61398).|RTL -> LTP (in Ref. 4; CAA96577).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GCACGCACGCTTCCAGTGTGG	0.637			NA											4	100					0	0	0.000602	0	0
OR51B5	282763	broad.mit.edu	37	11	5364346	5364346	+	Missense_Mutation	SNP	T	T	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr11:5364346T>A	uc001map.1	-	1	409	c.409A>T	c.(409-411)ACT>TCT	p.T137S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Missense_Mutation_p.T137S	NM_001005567	NP_001005567	Q9H339	O51B5_HUMAN	olfactory receptor, family 51, subfamily B,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.05e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTACTCGAGTATTAGTAAGT	0.458			NA											34	87					0	0	0.013726	0	0
SF1	7536	broad.mit.edu	37	11	64534716	64534716	+	Nonsense_Mutation	SNP	G	G	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr11:64534716G>T	uc001obb.1	-	11	1727	c.1350C>A	c.(1348-1350)TAC>TAA	p.Y450*	SF1_uc010rnm.1_Nonsense_Mutation_p.Y142*|SF1_uc010rnn.1_Nonsense_Mutation_p.Y424*|SF1_uc001oaz.1_Nonsense_Mutation_p.Y575*|SF1_uc001oba.1_Nonsense_Mutation_p.Y450*|SF1_uc001obc.1_Nonsense_Mutation_p.Y450*|SF1_uc001obd.1_Missense_Mutation_p.P452T|SF1_uc001obe.1_Missense_Mutation_p.P337T|SF1_uc010rno.1_Nonsense_Mutation_p.Y335*	NM_004630	NP_004621	Q15637	SF01_HUMAN	splicing factor 1 isoform 1	450	Pro-rich.				nuclear mRNA 3'-splice site recognition|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ribosome|spliceosomal complex	protein binding|RNA binding|transcription corepressor activity|zinc ion binding			ovary(1)|breast(1)|skin(1)	3						TACTTCCCAGGTACTGATCTT	0.542			NA									OREG0021062	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	139					2.48696e-23	2.9144e-23	0.003271	1	0
TULP3	7289	broad.mit.edu	37	12	3047432	3047432	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr12:3047432G>A	uc010seh.1	+	10	1257	c.1176G>A	c.(1174-1176)CAG>CAA	p.Q392Q	TULP3_uc009zec.1_Silent_p.Q119Q|TULP3_uc010seg.1_RNA|TULP3_uc001qlj.2_Silent_p.Q392Q|TULP3_uc010sei.1_Silent_p.Q216Q	NM_003324	NP_003315	O75386	TULP3_HUMAN	tubby like protein 3 isoform 1	392					G-protein coupled receptor protein signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|extracellular region|nucleus|plasma membrane	phosphatidylinositol-4,5-bisphosphate binding				0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			AGAACTTCCAGATAGTCCACA	0.532			NA											5	123					0	0	0.001984	0	0
DDX12	440081	broad.mit.edu	37	12	9574020	9574020	+	Silent	SNP	T	T	C	rs149364690	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr12:9574020T>C	uc010sgs.1	-	20	2211	c.2016A>G	c.(2014-2016)CTA>CTG	p.L672L	DDX12_uc001qvx.3_5'Flank|DDX12_uc001qvy.1_5'Flank	NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						ACGTGAATTCTAGCGGCTGGT	0.597			NA											4	37					0	0	0.001984	0	0
ARID2	196528	broad.mit.edu	37	12	46246594	46246594	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr12:46246594G>C	uc001ros.1	+	15	4688	c.4688G>C	c.(4687-4689)AGC>ACC	p.S1563T	ARID2_uc001ror.2_Missense_Mutation_p.S1563T|ARID2_uc009zkg.1_Missense_Mutation_p.S1019T|ARID2_uc009zkh.1_Missense_Mutation_p.S1190T|ARID2_uc001rou.1_Missense_Mutation_p.S897T	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1563					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		GCAGATCCAAGCACTGTAGCT	0.448			NA											4	95					0	0	0.009096	0	0
CNOT2	4848	broad.mit.edu	37	12	70704789	70704789	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr12:70704789G>A	uc001svv.2	+	3	742	c.163G>A	c.(163-165)GAA>AAA	p.E55K	CNOT2_uc009zro.2_Missense_Mutation_p.E55K|CNOT2_uc009zrp.2_Missense_Mutation_p.E35K|CNOT2_uc009zrq.2_Missense_Mutation_p.E55K	NM_014515	NP_055330	Q9NZN8	CNOT2_HUMAN	CCR4-NOT transcription complex, subunit 2	55					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	protein binding|RNA polymerase II transcription cofactor activity				0	Renal(347;0.236)		GBM - Glioblastoma multiforme(1;4.77e-09)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00243)|STAD - Stomach adenocarcinoma(21;0.0118)			ACATCGGTCAGAAAAAGATGT	0.393			NA											4	112					0	0	0.001168	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100466570	100466570	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr12:100466570G>A	uc001tgq.2	-	12	1658	c.1429C>T	c.(1429-1431)CGT>TGT	p.R477C	UHRF1BP1L_uc001tgr.2_Missense_Mutation_p.R477C|UHRF1BP1L_uc001tgp.2_Missense_Mutation_p.R127C	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	477										ovary(2)	2						GGGGAAGAACGACATTGTTCC	0.343			NA											22	90					0	0	0.003954	0	0
MYL2	4633	broad.mit.edu	37	12	111352074	111352074	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr12:111352074C>T	uc001try.3	-	4	261	c.190G>A	c.(190-192)GAA>AAA	p.E64K	MYL2_uc001trx.3_Missense_Mutation_p.E45K	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2	64					cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						TCAATTTCTTCATTTTTCACG	0.448	GBM(14;268 426 18829 21617 25540)		NA											9	89					0	0	0.004482	0	0
GOLGA3	2802	broad.mit.edu	37	12	133381541	133381541	+	Missense_Mutation	SNP	A	A	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr12:133381541A>C	uc001ukz.1	-	7	1917	c.1358T>G	c.(1357-1359)GTG>GGG	p.V453G	GOLGA3_uc001ula.1_Missense_Mutation_p.V453G|GOLGA3_uc001ulb.2_Missense_Mutation_p.V453G	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	453	Potential.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		GCTGCACTCCACCTGCGCCTG	0.597			NA											7	27					0	0	0.006122	0	0
PDS5B	23047	broad.mit.edu	37	13	33225967	33225967	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr13:33225967G>A	uc010abf.2	+	3	293	c.135G>A	c.(133-135)ATG>ATA	p.M45I	PDS5B_uc001uun.2_Missense_Mutation_p.M45I|PDS5B_uc001uuo.2_Missense_Mutation_p.M45I|PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	45					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		TTATGGATATGGACCAGGACT	0.318			NA											13	210					0	0	0.013537	0	0
RCBTB2	1102	broad.mit.edu	37	13	49076005	49076005	+	Splice_Site	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr13:49076005C>T	uc001vch.2	-	12	1489	c.1118_splice	c.e12-1	p.E373_splice	RCBTB2_uc010tgg.1_Splice_Site_p.E378_splice|RCBTB2_uc001vci.2_Splice_Site_p.E349_splice|RCBTB2_uc010tgh.1_Splice_Site_p.E99_splice|RCBTB2_uc001vcj.2_Splice_Site_p.E325_splice|RCBTB2_uc010acv.1_Splice_Site	NM_001268	NP_001259	O95199	RCBT2_HUMAN	regulator of chromosome condensation and BTB								Ran guanyl-nucleotide exchange factor activity			ovary(2)|lung(2)|skin(1)	5		all_cancers(8;4.86e-71)|all_epithelial(8;2.11e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;2.3e-10)|Lung NSC(96;1.07e-07)|Breast(56;1.53e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.00826)|Myeloproliferative disorder(33;0.0179)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(99;1.8e-09)|LUSC - Lung squamous cell carcinoma(3;0.116)		TCATCAGGTTCTAGGAGAATA	0.433			NA											4	63					0	0	0.009096	0	0
ADAM21	8747	broad.mit.edu	37	14	70924778	70924778	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr14:70924778G>C	uc001xmd.2	+	1	562	c.562G>C	c.(562-564)GAA>CAA	p.E188Q		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	188					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		GTTGGAATTTGAAGAGGCTGA	0.438			NA											13	124					0	0	0.001855	0	0
AHNAK2	113146	broad.mit.edu	37	14	105412632	105412632	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr14:105412632G>A	uc010axc.1	-	7	9276	c.9156C>T	c.(9154-9156)CCC>CCT	p.P3052P	AHNAK2_uc001ypx.2_Silent_p.P2952P	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3052						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CAGCTCCCTCGGGAACGTGGC	0.607			NA											31	205					0	0	0.010818	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414053	22414053	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr15:22414053C>A	uc001yuf.2	+	1	352	c.352C>A	c.(352-354)CTG>ATG	p.L118M		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GGTGGAGCTTCTGATGGTCTT	0.507			NA											8	303					3.07112e-06	3.38726e-06	0.010729	1	0
C15orf2	23742	broad.mit.edu	37	15	24922679	24922679	+	Silent	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr15:24922679C>T	uc001ywo.2	+	1	2139	c.1665C>T	c.(1663-1665)TCC>TCT	p.S555S		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	555					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CAGTCATTTCCACTGTCACAA	0.488			NA											13	247					0	0	0.003163	0	0
AQR	9716	broad.mit.edu	37	15	35198842	35198842	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr15:35198842G>A	uc001ziv.2	-	18	1916	c.1735C>T	c.(1735-1737)CGG>TGG	p.R579W		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	579						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		GGTCTCCTCCGGTCAAACTTA	0.408			NA											4	147					0	0	0.009096	0	0
LMAN1L	79748	broad.mit.edu	37	15	75115013	75115013	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr15:75115013G>A	uc002ayt.1	+	11	1164	c.1162G>A	c.(1162-1164)GGA>AGA	p.G388R	LMAN1L_uc010bke.1_Missense_Mutation_p.G376R	NM_021819	NP_068591	Q9HAT1	LMA1L_HUMAN	lectin, mannose-binding, 1 like precursor	388	Lumenal (Potential).					ER-Golgi intermediate compartment membrane|integral to membrane	sugar binding				0						CCTGCTCCATGGACAGTGGAC	0.607			NA											19	114					0	0	0.007413	0	0
MAN2A2	4122	broad.mit.edu	37	15	91449666	91449666	+	Silent	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr15:91449666C>G	uc010bnz.2	+	6	889	c.774C>G	c.(772-774)TCC>TCG	p.S258S	MAN2A2_uc010boa.2_Silent_p.S300S|MAN2A2_uc002bqc.2_Silent_p.S258S|MAN2A2_uc010uql.1_5'Flank|MAN2A2_uc010uqm.1_5'Flank	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	258	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			AGGCCAATTCCCACTACTTTG	0.572			NA											23	105					0	0	0.00278	0	0
RHBDL1	9028	broad.mit.edu	37	16	726739	726739	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr16:726739A>G	uc002cis.1	+	2	491	c.464A>G	c.(463-465)GAC>GGC	p.D155G	RHBDL1_uc002cir.1_Missense_Mutation_p.D90G|RHBDL1_uc010uun.1_Missense_Mutation_p.D90G	NM_003961	NP_003952	O75783	RHBL1_HUMAN	rhomboid protease 1	155					proteolysis|signal transduction	integral to plasma membrane|membrane fraction	calcium ion binding|serine-type endopeptidase activity				0		Hepatocellular(780;0.0218)				CTGCCCCGGGACGGGCCGCTG	0.647			NA											31	140					0	0	0.003755	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858028	9858028	+	Nonsense_Mutation	SNP	C	C	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr16:9858028C>A	uc002czo.3	-	13	3921	c.3373G>T	c.(3373-3375)GAG>TAG	p.E1125*	GRIN2A_uc010uym.1_Nonsense_Mutation_p.E1125*|GRIN2A_uc010uyn.1_Nonsense_Mutation_p.E968*|GRIN2A_uc002czr.3_Nonsense_Mutation_p.E1125*	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1125	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AAACCAGGCTCCTTCTCACCA	0.507			NA											33	369					1.42033e-22	1.65155e-22	0.004289	1	0
DNAH3	55567	broad.mit.edu	37	16	20996932	20996932	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr16:20996932C>G	uc010vbe.1	-	48	7132	c.7132G>C	c.(7132-7134)GAG>CAG	p.E2378Q	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2378					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCAGTGATCTCATCGTAGATT	0.443			NA											13	279					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	16	28354463	28354463	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr16:28354463T>C	uc010vcq.1	-	7	742	c.689A>G	c.(688-690)TAC>TGC	p.Y230C	uc010vcr.1_Missense_Mutation_p.Y248C					SubName: Full=LOC728741 protein;												NA						GTAGGGCCAGTAGGGCAATCC	0.478			NA											5	116					0	0	0.00308	0	0
C16orf58	64755	broad.mit.edu	37	16	31502203	31502203	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr16:31502203C>G	uc002eci.1	-	13	1372	c.1360G>C	c.(1360-1362)GAG>CAG	p.E454Q	C16orf58_uc002ecg.2_5'Flank|C16orf58_uc002ech.1_Missense_Mutation_p.E192Q	NM_022744	NP_073581	Q96GQ5	CP058_HUMAN	hypothetical protein LOC64755	454						integral to membrane				ovary(1)|breast(1)	2						GCCCTCCACTCATCCACCTCT	0.607			NA											9	181					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	17	21730847	21730847	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr17:21730847G>T	uc002gyy.3	+	2	274	c.149G>T	c.(148-150)CGG>CTG	p.R50L						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;												NA						GGCAAGCAGCGGGAAGATGGC	0.522			NA											3	49					0.004672	0.00500571	0.004672	1	0
CDK12	51755	broad.mit.edu	37	17	37619172	37619172	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr17:37619172C>T	uc010cvv.2	+	1	1434	c.848C>T	c.(847-849)TCG>TTG	p.S283L	CDK12_uc010wef.1_Missense_Mutation_p.S283L|CDK12_uc002hrw.3_Missense_Mutation_p.S283L	NM_016507	NP_057591	Q9NYV4	CDK12_HUMAN	Cdc2-related kinase, arginine/serine-rich	283					mRNA processing|phosphorylation of RNA polymerase II C-terminal domain|protein autophosphorylation|regulation of MAP kinase activity|RNA splicing	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck|nucleolus	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			ovary(10)|lung(4)|breast(2)|skin(2)|large_intestine(1)	19						AAGGAGCCTTCGGCCTACCAG	0.552			NA								TCGA Ovarian(9;0.13)			13	149					0	0	0.00245	0	0
MTMR4	9110	broad.mit.edu	37	17	56573109	56573109	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr17:56573109C>A	uc002iwj.2	-	16	2504	c.2394G>T	c.(2392-2394)ATG>ATT	p.M798I		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	798						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GCACACCTAGCATGGAGTCTG	0.527			NA											56	209					6.3237e-29	7.52821e-29	0.01441	1	0
OR1M1	125963	broad.mit.edu	37	19	9204692	9204692	+	Missense_Mutation	SNP	G	G	A	rs144608760		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr19:9204692G>A	uc010xkj.1	+	1	772	c.772G>A	c.(772-774)GTC>ATC	p.V258I		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	258	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						CACCATTGGCGTCTATCTGTG	0.557			NA											67	300					0	0	0.01441	0	0
SMARCA4	6597	broad.mit.edu	37	19	11132627	11132627	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr19:11132627C>T	uc002mqf.3	+	19	3127	c.2843C>T	c.(2842-2844)GCC>GTC	p.A948V	SMARCA4_uc010dxp.2_Missense_Mutation_p.A948V|SMARCA4_uc010dxo.2_Missense_Mutation_p.A948V|SMARCA4_uc002mqg.1_Missense_Mutation_p.A948V|SMARCA4_uc010dxq.2_Missense_Mutation_p.A948V|SMARCA4_uc010dxr.2_Missense_Mutation_p.A948V|SMARCA4_uc002mqj.3_Missense_Mutation_p.A948V|SMARCA4_uc010dxs.2_Missense_Mutation_p.A948V|SMARCA4_uc010dxt.1_Missense_Mutation_p.A168V|SMARCA4_uc002mqh.3_Missense_Mutation_p.A71V|SMARCA4_uc002mqi.1_Missense_Mutation_p.A151V	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	948					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GCACCCTTTGCCATGACCGGG	0.587			NA	F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				4	132					0	0	0.009096	0	0
PRKCG	5582	broad.mit.edu	37	19	54387495	54387495	+	Missense_Mutation	SNP	G	G	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr19:54387495G>T	uc002qcq.1	+	3	565	c.283G>T	c.(283-285)GAC>TAC	p.D95Y	PRKCG_uc010eqz.1_Missense_Mutation_p.D95Y|PRKCG_uc010yef.1_Missense_Mutation_p.D95Y|PRKCG_uc010yeg.1_Missense_Mutation_p.D95Y|PRKCG_uc010yeh.1_Missense_Mutation_p.G19V	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	95					activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CCCCCAGACGGACGTGAGTGC	0.582			NA											5	144					4.096e-09	4.58507e-09	0.001168	1	0
CCT4	10575	broad.mit.edu	37	2	62104098	62104098	+	Missense_Mutation	SNP	T	T	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:62104098T>G	uc002sbo.2	-	7	883	c.734A>C	c.(733-735)AAG>ACG	p.K245T	CCT4_uc010ypp.1_Missense_Mutation_p.K189T|CCT4_uc010ypq.1_Missense_Mutation_p.K95T|CCT4_uc010ypr.1_Missense_Mutation_p.K189T|CCT4_uc010yps.1_Missense_Mutation_p.K215T	NM_006430	NP_006421	P50991	TCPD_HUMAN	chaperonin containing TCP1, subunit 4 (delta)	245					'de novo' posttranslational protein folding	melanosome|microtubule organizing center|nucleus	ATP binding|unfolded protein binding			ovary(2)	2	Lung NSC(7;0.035)|all_lung(7;0.0691)		LUSC - Lung squamous cell carcinoma(7;6.5e-06)|Epithelial(17;0.0647)|all cancers(80;0.221)			AAGCCCAATCTTGGCCTTTTC	0.398			NA											28	237					0	0	0.010818	0	0
MRPL53	116540	broad.mit.edu	37	2	74699752	74699752	+	Silent	SNP	A	A	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:74699752A>T	uc002sln.2	-	1	176	c.36T>A	c.(34-36)CCT>CCA	p.P12P	CCDC142_uc002slo.2_RNA	NM_053050	NP_444278	Q96EL3	RM53_HUMAN	mitochondrial ribosomal protein L53 precursor	12						mitochondrion|ribosome					0						CCTGTTTGACAGGCCGCAGAC	0.602			NA											3	97					0	0	0.004672	0	0
SCTR	6344	broad.mit.edu	37	2	120209616	120209616	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:120209616G>C	uc002tma.2	-	9	1117	c.891C>G	c.(889-891)ATC>ATG	p.I297M	SCTR_uc002tlz.2_Missense_Mutation_p.I119M	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	297	Helical; Name=5; (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	GACCACGAATGATCCACCAGA	0.597			NA											4	27					0	0	0.009096	0	0
TMEM163	81615	broad.mit.edu	37	2	135215671	135215671	+	Silent	SNP	C	C	G	rs17852356		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:135215671C>G	uc002ttx.2	-	7	807	c.741G>C	c.(739-741)TCG>TCC	p.S247S	TMEM163_uc002tty.2_RNA	NM_030923	NP_112185	Q8TC26	TM163_HUMAN	transmembrane protein 163	247						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(221;0.154)		ACCAGACCGCCGAGTCATGCT	0.537			NA											7	207					0	0	0.00308	0	0
LRP1B	53353	broad.mit.edu	37	2	141072616	141072616	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:141072616C>G	uc002tvj.1	-	83	13665	c.12693G>C	c.(12691-12693)GAG>GAC	p.E4231D		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4231	Extracellular (Potential).|EGF-like 10.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AATCACCTTTCTCATTTAAAA	0.383	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			6	110					0	0	0.001168	0	0
ACVR2A	92	broad.mit.edu	37	2	148677879	148677879	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:148677879A>G	uc002twg.2	+	9	1312	c.1043A>G	c.(1042-1044)GAG>GGG	p.E348G	ACVR2A_uc010zbn.1_Missense_Mutation_p.E240G|ACVR2A_uc002twh.2_Missense_Mutation_p.E348G	NM_001616	NP_001607	P27037	AVR2A_HUMAN	activin A receptor, type IIA precursor	348	Cytoplasmic (Potential).|Protein kinase.			E -> V (in Ref. 4; BAA06548).	activin receptor signaling pathway|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of erythrocyte differentiation|positive regulation of osteoblast differentiation|positive regulation of protein phosphorylation	cytoplasm|inhibin-betaglycan-ActRII complex|integral to plasma membrane	ATP binding|coreceptor activity|inhibin beta-A binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			stomach(8)|large_intestine(2)|lung(1)|breast(1)|kidney(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.0969)		TTAAAATTTGAGGCTGGCAAG	0.368			NA											3	168					0	0	0.009096	0	0
WDSUB1	151525	broad.mit.edu	37	2	160139521	160139521	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:160139521G>A	uc002uaj.3	-	2	209	c.60C>T	c.(58-60)TTC>TTT	p.F20F	WDSUB1_uc002uak.3_Silent_p.F20F|WDSUB1_uc002ual.3_Silent_p.F20F|WDSUB1_uc002uam.3_Silent_p.F20F|WDSUB1_uc010foo.2_Silent_p.F20F	NM_152528	NP_689741	Q8N9V3	WSDU1_HUMAN	WD repeat, sterile alpha motif and U-box domain	20	WD 1.					ubiquitin ligase complex	ubiquitin-protein ligase activity				0						GGGAAAAGGAGAAGGCACAGC	0.408			NA											4	144					0	0	0.009096	0	0
DNAH7	56171	broad.mit.edu	37	2	196642529	196642529	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:196642529C>T	uc002utj.3	-	59	11160	c.11059G>A	c.(11059-11061)GGT>AGT	p.G3687S	DNAH7_uc002uti.3_Missense_Mutation_p.G170S	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3687					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTTACATCACCAGAAGGAGGA	0.358			NA											3	129					0	0	0.009096	0	0
DNAH7	56171	broad.mit.edu	37	2	196664038	196664038	+	Silent	SNP	T	T	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:196664038T>A	uc002utj.3	-	55	10436	c.10335A>T	c.(10333-10335)CTA>CTT	p.L3445L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3445	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CAGCAAATTTTAGAAGGGCAG	0.408			NA											53	243					0	0	0.01441	0	0
ANKMY1	51281	broad.mit.edu	37	2	241451413	241451413	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr2:241451413G>A	uc002vyz.1	-	10	2113	c.1884C>T	c.(1882-1884)GAC>GAT	p.D628D	ANKMY1_uc002vza.1_Intron|ANKMY1_uc010fzd.1_Silent_p.D717D|ANKMY1_uc002vzb.1_Silent_p.D389D|ANKMY1_uc002vzc.1_Silent_p.D487D|ANKMY1_uc002vzd.1_Silent_p.D487D	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	628							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		AGGGCAGCAGGTCCAGCTGTG	0.672			NA											12	64					0	0	0.013537	0	0
C20orf26	26074	broad.mit.edu	37	20	20322542	20322542	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr20:20322542C>T	uc002wru.2	+	26	3566	c.3490C>T	c.(3490-3492)CGC>TGC	p.R1164C	C20orf26_uc002wrw.2_RNA	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	1164										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		GAAAGAGTTACGCCAAATCTT	0.443			NA											21	60					0	0	0.010504	0	0
NFATC2	4773	broad.mit.edu	37	20	50139845	50139845	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr20:50139845G>A	uc002xwd.2	-	2	1155	c.935C>T	c.(934-936)ACG>ATG	p.T312M	NFATC2_uc002xwc.2_Missense_Mutation_p.T312M|NFATC2_uc010zyv.1_Missense_Mutation_p.T93M|NFATC2_uc010zyw.1_Missense_Mutation_p.T93M|NFATC2_uc010zyx.1_Missense_Mutation_p.T292M|NFATC2_uc010zyy.1_Missense_Mutation_p.T93M|NFATC2_uc010zyz.1_Missense_Mutation_p.T93M|NFATC2_uc002xwe.2_Missense_Mutation_p.T292M	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	312					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					AGGCGAGTCCGTGGCGAGGCT	0.687			NA											3	28					0	0	0.009096	0	0
SPO11	23626	broad.mit.edu	37	20	55909089	55909089	+	Missense_Mutation	SNP	G	G	A	rs141106732		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr20:55909089G>A	uc002xye.2	+	5	541	c.448G>A	c.(448-450)GTC>ATC	p.V150I	SPO11_uc002xyf.2_Missense_Mutation_p.V112I	NM_012444	NP_036576	Q9Y5K1	SPO11_HUMAN	meiotic recombination protein SPO11 isoform a	150					female gamete generation|reciprocal meiotic recombination	chromosome|nucleus	ATP binding|DNA binding|hydrolase activity			breast(2)|skin(1)	3	Lung NSC(12;0.0066)|all_lung(29;0.0188)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;1.73e-14)|Epithelial(14;9.02e-10)|all cancers(14;9.31e-09)			CCAGACTGTCGTCGACAATAT	0.269			NA						Editing_and_processing_nucleases					11	40					0	0	0.013537	0	0
SLC17A9	63910	broad.mit.edu	37	20	61588916	61588916	+	Silent	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr20:61588916C>G	uc002yea.3	+	3	565	c.381C>G	c.(379-381)CTC>CTG	p.L127L	SLC17A9_uc002ydz.3_Silent_p.L121L|SLC17A9_uc011aap.1_Silent_p.L147L	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	127	Helical; (Potential).				exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						CACGCATCCTCATGGGCTTGC	0.577			NA											3	82					0	0	0.004672	0	0
LCA5L	150082	broad.mit.edu	37	21	40778294	40778294	+	Silent	SNP	G	G	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr21:40778294G>T	uc002yxu.2	-	10	1840	c.1527C>A	c.(1525-1527)GGC>GGA	p.G509G	LCA5L_uc002yxv.2_Silent_p.G509G	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	509											0		Prostate(19;1.2e-06)				AGGGAGCAGTGCCTTTGCCAA	0.453			NA											23	58					1.90627e-21	2.19954e-21	0.012319	1	0
U2AF1	7307	broad.mit.edu	37	21	44524456	44524456	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr21:44524456G>A	uc002zda.1	-	2	185	c.101C>T	c.(100-102)TCT>TTT	p.S34F	U2AF1_uc002zcy.1_5'UTR|U2AF1_uc002zcz.1_5'UTR|U2AF1_uc002zdb.1_Missense_Mutation_p.S34F|U2AF1_uc010gpi.1_Missense_Mutation_p.S34F|U2AF1_uc002zdc.1_Missense_Mutation_p.S34F	NM_001025203	NP_001020374	Q01081	U2AF1_HUMAN	U2 small nuclear RNA auxillary factor 1 isoform	34	C3H1-type 1.				mRNA 3'-end processing|mRNA export from nucleus|termination of RNA polymerase II transcription	Cajal body|catalytic step 2 spliceosome|nuclear speck	nucleotide binding|RNA binding|zinc ion binding				0						GTGCAACCGAGAGCACCTGTC	0.358			NA											26	48					0	0	0.008361	0	0
GGT1	2678	broad.mit.edu	37	22	25010819	25010819	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr22:25010819C>G	uc003aan.1	+	6	728	c.241C>G	c.(241-243)CAC>GAC	p.H81D	GGT1_uc003aas.1_Missense_Mutation_p.H81D|GGT1_uc003aat.1_Missense_Mutation_p.H81D|GGT1_uc003aau.1_Missense_Mutation_p.H81D|GGT1_uc003aav.1_Missense_Mutation_p.H81D|GGT1_uc003aaw.1_Missense_Mutation_p.H81D|GGT1_uc003aax.1_Missense_Mutation_p.H81D	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	81	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	CATGAATGCCCACAGCATGGG	0.622			NA											12	109					0	0	0.013537	0	0
ATP2B2	491	broad.mit.edu	37	3	10401606	10401606	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr3:10401606G>A	uc003bvt.2	-	13	2300	c.1861C>T	c.(1861-1863)CGC>TGC	p.R621C	ATP2B2_uc003bvv.2_Missense_Mutation_p.R576C|ATP2B2_uc003bvw.2_Missense_Mutation_p.R576C|ATP2B2_uc010hdo.2_Missense_Mutation_p.R326C	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	621	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CTGTACATGCGGAAGCTCTCG	0.597	Ovarian(125;1619 1709 15675 19819 38835)		NA											64	117					0	0	0.01441	0	0
FAM19A4	151647	broad.mit.edu	37	3	68802078	68802078	+	Silent	SNP	G	G	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr3:68802078G>C	uc003dnh.1	-	4	665	c.222C>G	c.(220-222)GTC>GTG	p.V74V	FAM19A4_uc003dni.1_Silent_p.V74V	NM_182522	NP_872328	Q96LR4	F19A4_HUMAN	family with sequence similarity 19 (chemokine	74						extracellular region				skin(2)	2		Lung NSC(201;0.0198)		BRCA - Breast invasive adenocarcinoma(55;1.38e-05)|Epithelial(33;0.000124)|LUSC - Lung squamous cell carcinoma(21;0.0248)|KIRC - Kidney renal clear cell carcinoma(39;0.0729)|Kidney(39;0.0904)		AAGAGCACTTGACCGTTTGTG	0.537			NA											11	178					0	0	0.013537	0	0
TBC1D23	55773	broad.mit.edu	37	3	100009497	100009497	+	Silent	SNP	T	T	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr3:100009497T>G	uc003dtt.2	+	5	729	c.552T>G	c.(550-552)TCT>TCG	p.S184S	TBC1D23_uc003dts.2_Silent_p.S184S	NM_018309	NP_060779	Q9NUY8	TBC23_HUMAN	TBC1 domain family, member 23	184	Rab-GAP TBC.					intracellular	Rab GTPase activator activity			ovary(1)|liver(1)	2						AGCTTTGTTCTTATCTTGATA	0.363			NA											6	113					0	0	0.001168	0	0
HHLA2	11148	broad.mit.edu	37	3	108076844	108076844	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr3:108076844A>G	uc003dwy.3	+	6	1006	c.839A>G	c.(838-840)AAT>AGT	p.N280S	HHLA2_uc011bhl.1_Missense_Mutation_p.N216S|HHLA2_uc010hpu.2_Missense_Mutation_p.N280S|HHLA2_uc003dwz.2_Missense_Mutation_p.N280S	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	280	Ig-like V-type 2.					integral to membrane				ovary(1)	1						TCCTCACAAAATACAATTATC	0.378			NA											7	219					0	0	0.004482	0	0
SEC61A1	29927	broad.mit.edu	37	3	127785935	127785935	+	Nonsense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr3:127785935C>T	uc003ekb.2	+	9	1100	c.916C>T	c.(916-918)CAA>TAA	p.Q306*	RUVBL1_uc003eke.2_Intron|RUVBL1_uc003ekf.2_Intron|SEC61A1_uc003ekc.2_Nonsense_Mutation_p.Q253*|SEC61A1_uc003ekd.2_Nonsense_Mutation_p.Q186*|SEC61A1_uc003ekg.2_5'UTR	NM_013336	NP_037468	P61619	S61A1_HUMAN	Sec61 alpha 1 subunit	306	Helical; (Potential).				protein targeting to ER	integral to endoplasmic reticulum membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|protein binding|ribosome binding			ovary(1)	1						TGTCATCTCCCAAATGCTCTC	0.527			NA											60	206					0	0	0.01441	0	0
RAB7A	7879	broad.mit.edu	37	3	128514237	128514237	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr3:128514237G>A	uc003eks.1	+	2	259	c.27G>A	c.(25-27)CTG>CTA	p.L9L	RAB7A_uc010hsv.1_Silent_p.L9L|RAB7A_uc003ekt.2_5'Flank	NM_004637	NP_004628	P51149	RAB7A_HUMAN	RAB7, member RAS oncogene family	9					endocytosis|endosome to lysosome transport|epidermal growth factor catabolic process|protein transport|small GTPase mediated signal transduction	Golgi apparatus|late endosome|lysosome|melanosome|phagocytic vesicle	GDP binding|GTP binding|GTPase activity|protein binding				0				GBM - Glioblastoma multiforme(114;0.231)		AAGTGTTGCTGAAGGTTATCA	0.453			NA									OREG0015781	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	165					0	0	0.001168	0	0
SENP5	205564	broad.mit.edu	37	3	196613336	196613336	+	Silent	SNP	T	T	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr3:196613336T>C	uc003fwz.3	+	2	1533	c.1284T>C	c.(1282-1284)CCT>CCC	p.P428P	SENP5_uc011bty.1_Silent_p.P428P	NM_152699	NP_689912	Q96HI0	SENP5_HUMAN	SUMO1/sentrin specific peptidase 5	428					cell cycle|cell division|proteolysis	nucleolus	cysteine-type peptidase activity			breast(2)|lung(1)	3	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;3.14e-24)|all cancers(36;2.1e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.03e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.004)		TAGATGGGCCTGTGTCCCAAA	0.468	Ovarian(47;891 1095 11174 13858 51271)		NA											3	131					0	0	0.004672	0	0
MTTP	4547	broad.mit.edu	37	4	100532564	100532564	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr4:100532564T>C	uc003hvc.3	+	15	2199	c.1943T>C	c.(1942-1944)CTG>CCG	p.L648P	MTTP_uc011cej.1_Missense_Mutation_p.L675P	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	648	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	AGAAGTAACCTGAACATCTTT	0.433			NA											104	185					0	0	0.01441	0	0
TACR3	6870	broad.mit.edu	37	4	104640578	104640578	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr4:104640578G>A	uc003hxe.1	-	1	398	c.255C>T	c.(253-255)ATC>ATT	p.I85I		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	85	Helical; Name=1; (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		ACCAGAGCGCGATGCGCCAGG	0.647			NA											14	171					0	0	0.004007	0	0
CDH6	1004	broad.mit.edu	37	5	31317961	31317961	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr5:31317961G>A	uc003jhe.1	+	11	2138	c.1812G>A	c.(1810-1812)GCG>GCA	p.A604A	CDH6_uc003jhd.1_Silent_p.A604A	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	604	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						ATGCGGAGGCGCTCATCCACC	0.582			NA											5	172					0	0	0.000602	0	0
BDP1	55814	broad.mit.edu	37	5	70837459	70837459	+	Missense_Mutation	SNP	A	A	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr5:70837459A>C	uc003kbp.1	+	29	6464	c.6201A>C	c.(6199-6201)AGA>AGC	p.R2067S	BDP1_uc003kbo.2_Missense_Mutation_p.R2067S|BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	2067					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AAAGTTCCAGAGAAGAAATAA	0.313			NA											34	120					0	0	0.003271	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801620	140801620	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr5:140801620G>A	uc003lkq.1	+	1	1084	c.826G>A	c.(826-828)GGG>AGG	p.G276R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Missense_Mutation_p.G276R|PCDHGA11_uc003lkp.1_Missense_Mutation_p.G276R	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	276	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGAATCAACGGGGAAGTAAT	0.463			NA											68	357					0	0	0.01441	0	0
ARSI	340075	broad.mit.edu	37	5	149677361	149677361	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr5:149677361C>T	uc003lrv.2	-	2	1715	c.1126G>A	c.(1126-1128)GCC>ACC	p.A376T		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	376						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCGCTGATGGCCGGCCACACG	0.637			NA											5	192					0	0	0.001168	0	0
WWC1	23286	broad.mit.edu	37	5	167850949	167850949	+	Silent	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr5:167850949C>T	uc003lzu.2	+	11	1779	c.1686C>T	c.(1684-1686)CTC>CTT	p.L562L	WWC1_uc003lzv.2_Silent_p.L562L|WWC1_uc011den.1_Silent_p.L562L|WWC1_uc003lzw.2_Silent_p.L361L	NM_015238	NP_056053	Q8IX03	KIBRA_HUMAN	WW and C2 domain containing 1 isoform 3	562					cell migration|positive regulation of MAPKKK cascade|regulation of hippo signaling cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|ruffle membrane	protein binding|transcription coactivator activity			ovary(2)|skin(2)|breast(1)	5	Renal(175;0.000212)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0399)|all_neural(177;0.0577)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0364)|Epithelial(171;0.0765)|OV - Ovarian serous cystadenocarcinoma(192;0.0918)		ATGCCTTCCTCAACTCCTTGG	0.587			NA											32	176					0	0	0.013726	0	0
PIP5K1P1	206426	broad.mit.edu	37	6	7986912	7986912	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr6:7986912T>C	uc003mxx.3	+	1	578	c.143T>C	c.(142-144)ATC>ACC	p.I48T	TXNDC5_uc003mxw.2_Intron	NR_027712				RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase type-1 alpha;          Short=PtdIns(4)P-5-kinase alpha;          Short=PIP5KIalpha;          EC=2.7.1.68; AltName: Full=Phosphatidylinositol-4-phosphate 5-kinase type I alpha; AltName: Full=68 kDa type I phosphatidylinositol-4-phosphate 5-kinase alpha;												0						GGCATGCCCATCAAGAAAACA	0.522			NA											3	44					0	0	0.009096	0	0
TRIM15	89870	broad.mit.edu	37	6	30140065	30140065	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr6:30140065G>A	uc010jrx.2	+	7	1816	c.1337G>A	c.(1336-1338)GGC>GAC	p.G446D		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	446	B30.2/SPRY.				mesodermal cell fate determination	intracellular	zinc ion binding				0						TCTTTCTCCGGCAAAGTCTTC	0.632			NA											4	89					0	0	0.009096	0	0
PPP1R10	5514	broad.mit.edu	37	6	30574350	30574350	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr6:30574350C>G	uc003nqn.1	-	8	1081	c.529G>C	c.(529-531)GAG>CAG	p.E177Q	PPP1R10_uc010jsc.1_5'UTR	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	177	Interaction with TOX4 (By similarity).				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GCCTTCACCTCTGTCAAAGGT	0.488			NA											11	171					0	0	0.008291	0	0
USP49	25862	broad.mit.edu	37	6	41774070	41774070	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr6:41774070C>T	uc003ori.2	-	4	874	c.652G>A	c.(652-654)GAC>AAC	p.D218N		NM_018561	NP_061031	Q70CQ1	UBP49_HUMAN	ubiquitin thioesterase 49	218					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(28;0.0919)|Colorectal(47;0.121)		STAD - Stomach adenocarcinoma(11;0.000204)|Epithelial(12;0.000309)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			gggcccgcgtcgcggggcgTG	0.577			NA											6	13					0	0	0.00308	0	0
CUL9	23113	broad.mit.edu	37	6	43184061	43184061	+	Silent	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr6:43184061C>T	uc003ouk.2	+	31	6177	c.6102C>T	c.(6100-6102)GGC>GGT	p.G2034G	CUL9_uc003oul.2_Silent_p.G2006G|CUL9_uc010jyk.2_Silent_p.G1186G|CUL9_uc003oun.2_5'UTR	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	2034					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						CCCACTGGGGCGCTGAACAGC	0.597			NA											25	89					0	0	0.004656	0	0
HTR1B	3351	broad.mit.edu	37	6	78172847	78172847	+	Missense_Mutation	SNP	C	C	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr6:78172847C>A	uc003pil.1	-	1	274	c.274G>T	c.(274-276)GCG>TCG	p.A92S		NM_000863	NP_000854	P28222	5HT1B_HUMAN	5-hydroxytryptamine (serotonin) receptor 1B	92	Helical; Name=2; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cAMP biosynthetic process|synaptic transmission	integral to plasma membrane	protein binding|serotonin receptor activity				0		all_cancers(76;0.0867)|Acute lymphoblastic leukemia(125;0.00119)|all_hematologic(105;0.0332)		BRCA - Breast invasive adenocarcinoma(397;0.205)	Almotriptan(DB00918)|Dexfenfluramine(DB01191)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Pindolol(DB00960)|Propranolol(DB00571)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Venlafaxine(DB00285)|Zolmitriptan(DB00315)	TCGGTGACCGCCAGAGAGGCG	0.597			NA											55	243					7.36392e-32	8.83671e-32	0.01441	1	0
SNAP91	9892	broad.mit.edu	37	6	84270599	84270599	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr6:84270599C>G	uc011dze.1	-	26	2827	c.2510G>C	c.(2509-2511)GGA>GCA	p.G837A	SNAP91_uc011dzd.1_Missense_Mutation_p.G335A|SNAP91_uc003pkb.2_Missense_Mutation_p.G746A|SNAP91_uc003pkc.2_Missense_Mutation_p.G807A|SNAP91_uc003pkd.2_Missense_Mutation_p.G530A|SNAP91_uc003pka.2_Missense_Mutation_p.G835A	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	837	Pro-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		AAATCCTGCTCCAGGTTGTCC	0.313			NA											8	45					0	0	0.008291	0	0
FBXO30	84085	broad.mit.edu	37	6	146126568	146126568	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr6:146126568G>A	uc003qla.2	-	2	1173	c.974C>T	c.(973-975)TCA>TTA	p.S325L	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	325							ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		GGAAGGTTTTGAAGTGCCATC	0.428			NA											34	90					0	0	0.012213	0	0
SCRN1	9805	broad.mit.edu	37	7	30008662	30008662	+	Missense_Mutation	SNP	A	A	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr7:30008662A>G	uc010kvp.2	-	1	226	c.22T>C	c.(22-24)TAC>CAC	p.Y8H	SCRN1_uc011jzy.1_Intron|SCRN1_uc003tak.2_Missense_Mutation_p.Y8H|SCRN1_uc011jzz.1_Missense_Mutation_p.Y8H|SCRN1_uc011kaa.1_Missense_Mutation_p.Y28H|SCRN1_uc011jzx.1_Intron	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	8					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						ACAAAACAGTAACTTGGAGGA	0.478			NA											22	38					0	0	0.012319	0	0
STAG3	10734	broad.mit.edu	37	7	99796183	99796183	+	Missense_Mutation	SNP	G	G	A	rs149765159		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr7:99796183G>A	uc003utx.1	+	13	1485	c.1330G>A	c.(1330-1332)GCA>ACA	p.A444T	STAG3_uc010lgs.1_Missense_Mutation_p.A232T|STAG3_uc011kjk.1_Missense_Mutation_p.A386T|STAG3_uc003uub.1_5'Flank	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	444					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGCCTCTGCCGCAGGCGAATT	0.547			NA											30	159					0	0	0.00632	0	0
COG5	10466	broad.mit.edu	37	7	107013191	107013191	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr7:107013191G>A	uc003ved.2	-	8	1302	c.777C>T	c.(775-777)GTC>GTT	p.V259V	COG5_uc003vec.2_Silent_p.V259V|COG5_uc003vee.2_Silent_p.V259V	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	259					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						GAGCTGTTCCGACTTGAGTTG	0.343			NA											15	82					0	0	0.003163	0	0
LRGUK	136332	broad.mit.edu	37	7	133943059	133943059	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr7:133943059C>T	uc003vrm.1	+	19	2265	c.2249C>T	c.(2248-2250)CCG>CTG	p.P750L		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	750							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						CGGTTCTGTCCGTGGTCAAAA	0.453			NA											11	153					0	0	0.013537	0	0
ST18	9705	broad.mit.edu	37	8	53071617	53071617	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr8:53071617G>A	uc003xqz.2	-	10	1803	c.1647C>T	c.(1645-1647)GGC>GGT	p.G549G	ST18_uc011ldq.1_Silent_p.G196G|ST18_uc011ldr.1_Silent_p.G514G|ST18_uc011lds.1_Silent_p.G454G|ST18_uc003xra.2_Silent_p.G549G|ST18_uc003xrb.2_Silent_p.G549G	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	549						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				GGGTGTGGGCGCCTGCACTAG	0.483			NA											57	198					0	0	0.01441	0	0
MSC	9242	broad.mit.edu	37	8	72756065	72756065	+	Missense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr8:72756065G>A	uc003xyx.1	-	1	667	c.349C>T	c.(349-351)CGT>TGT	p.R117C	uc011lff.1_Intron|uc003xyy.2_5'Flank	NM_005098	NP_005089	O60682	MUSC_HUMAN	musculin	117	Basic motif.				transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity				0	Breast(64;0.176)		Epithelial(68;0.137)|BRCA - Breast invasive adenocarcinoma(89;0.203)			ATCCGGGCACGCTCACGGGCG	0.687			NA									OREG0018826	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	77					0	0	0.009096	0	0
HEY1	23462	broad.mit.edu	37	8	80677881	80677881	+	Nonsense_Mutation	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr8:80677881G>A	uc003ybm.2	-	5	657	c.457C>T	c.(457-459)CGA>TGA	p.R153*	HEY1_uc010lzq.2_Nonsense_Mutation_p.R34*|HEY1_uc003ybl.2_Nonsense_Mutation_p.R157*	NM_012258	NP_036390	Q9Y5J3	HEY1_HUMAN	hairy/enhancer-of-split related with YRPW motif	153	Orange.				angiogenesis|negative regulation of Notch signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|Notch signaling pathway|transcription, DNA-dependent	nucleus	DNA binding|protein binding			lung(3)	3	all_lung(9;5.1e-05)		Epithelial(68;0.076)|all cancers(69;0.179)			GAAACCAGTCGAACTCGAAGC	0.582			NA									OREG0018837	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	137					0	0	0.004482	0	0
SLC39A4	55630	broad.mit.edu	37	8	145640272	145640272	+	Silent	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr8:145640272C>T	uc003zcq.2	-	5	913	c.813G>A	c.(811-813)CTG>CTA	p.L271L	SLC39A4_uc003zcm.1_5'Flank|SLC39A4_uc003zcn.2_5'Flank|SLC39A4_uc003zco.2_5'UTR|SLC39A4_uc003zcp.2_Silent_p.L246L	NM_130849	NP_570901	Q6P5W5	S39A4_HUMAN	solute carrier family 39 (zinc transporter),	271	Extracellular (Potential).					cytoplasmic membrane-bounded vesicle|integral to membrane|recycling endosome membrane	zinc ion transmembrane transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;1.12e-40)|all cancers(56;8.17e-36)|BRCA - Breast invasive adenocarcinoma(115;0.0407)|Colorectal(110;0.055)			CCCTGGCACTCAGGCATACCT	0.672			NA											43	215					0	0	0.01441	0	0
TLR4	7099	broad.mit.edu	37	9	120475310	120475310	+	Missense_Mutation	SNP	G	G	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr9:120475310G>C	uc004bjz.2	+	3	1195	c.904G>C	c.(904-906)GAC>CAC	p.D302H	TLR4_uc004bka.2_Missense_Mutation_p.D262H|TLR4_uc004bkb.2_Missense_Mutation_p.D102H	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	302	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TGATATTATTGACTTATTTAA	0.348			NA											8	162					0	0	0.00308	0	0
NAIF1	203245	broad.mit.edu	37	9	130829073	130829073	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr9:130829073C>G	uc004bta.2	-	1	527	c.308G>C	c.(307-309)GGA>GCA	p.G103A	NAIF1_uc004bsz.2_Intron|SLC25A25_uc004btb.2_5'Flank	NM_197956	NP_931045	Q69YI7	NAIF1_HUMAN	nuclear apoptosis inducing factor 1	103	Gly-rich.				apoptosis|induction of apoptosis	nucleus					0						CCCCCCAGCTCCGTCCTCCTC	0.682			NA											7	60					0	0	0.006214	0	0
VAV2	7410	broad.mit.edu	37	9	136671295	136671295	+	Silent	SNP	G	G	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr9:136671295G>A	uc004ces.2	-	9	790	c.744C>T	c.(742-744)ATC>ATT	p.I248I	VAV2_uc004cer.2_Silent_p.I243I	NM_001134398	NP_001127870	P52735	VAV2_HUMAN	vav 2 guanine nucleotide exchange factor isoform	248	DH.				angiogenesis|apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	metal ion binding|Rho guanyl-nucleotide exchange factor activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(145;3.9e-07)|Epithelial(140;2.07e-06)|all cancers(34;9.39e-06)		GATGCACCTTGATCAGGTCCT	0.592			NA											4	35					0	0	0.009096	0	0
FAM47A	158724	broad.mit.edu	37	X	34150227	34150227	+	Missense_Mutation	SNP	C	C	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chrX:34150227C>T	uc004ddg.2	-	1	202	c.169G>A	c.(169-171)GAC>AAC	p.D57N		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	57										ovary(4)|central_nervous_system(1)	5						TAGCGGAAGTCGTCCATGCCC	0.562			NA											4	94					0	0	0.009096	0	0
FAM47C	442444	broad.mit.edu	37	X	37028662	37028662	+	Missense_Mutation	SNP	T	T	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chrX:37028662T>C	uc004ddl.1	+	1	2193	c.2179T>C	c.(2179-2181)TGC>CGC	p.C727R		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	727										ovary(3)	3						ATCTCATCTCTGCCCGGAGCC	0.637			NA											4	71					0	0	0.009096	0	0
FAM47C	442444	broad.mit.edu	37	X	37028695	37028695	+	Missense_Mutation	SNP	C	C	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chrX:37028695C>G	uc004ddl.1	+	1	2226	c.2212C>G	c.(2212-2214)CTC>GTC	p.L738V		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	738										ovary(3)	3						AGTGTCCCATCTCCGCCCAGA	0.632			NA											6	80					0	0	0.001984	0	0
DMBT1	1755	broad.mit.edu	37	10	124399784	124399786	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	TCC	TCC	-	-	TCC	TCC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr10:124399784_124399786delTCC	uc001lgk.1	+	52	6890_6892	c.6784_6786delTCC	c.(6784-6786)TCCdel	p.S2264del	DMBT1_uc001lgl.1_In_Frame_Del_p.S2254del|DMBT1_uc001lgm.1_In_Frame_Del_p.S1636del|DMBT1_uc009xzz.1_In_Frame_Del_p.S2263del|DMBT1_uc010qtx.1_In_Frame_Del_p.S984del|DMBT1_uc009yab.1_In_Frame_Del_p.S967del|DMBT1_uc009yac.1_In_Frame_Del_p.S558del	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2264	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CTTTTATACTTCCTCATCTTTCT	0.453	Ovarian(182;93 2026 18125 22222 38972)		NA											53	146	---	---	---	---	NA	NA	NA	NA	NA
CLSTN3	9746	broad.mit.edu	37	12	7286327	7286328	+	Frame_Shift_Ins	INS	-	-	A	rs149627692	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr12:7286327_7286328insA	uc001qsr.2	+	3	624_625	c.346_347insA	c.(346-348)GAGfs	p.E116fs	CLSTN3_uc001qss.2_Frame_Shift_Ins_p.E128fs	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	116	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						TGACTGTGGCGAGGGCCCCGAC	0.629			NA											7	144	---	---	---	---	NA	NA	NA	NA	NA
C14orf106	55320	broad.mit.edu	37	14	45693722	45693722	+	Frame_Shift_Del	DEL	T	T	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr14:45693722delT	uc001wwf.2	-	11	2527	c.2068delA	c.(2068-2070)AGTfs	p.S690fs		NM_018353	NP_060823	Q6P0N0	M18BP_HUMAN	chromosome 14 open reading frame 106	690					cell division|CenH3-containing nucleosome assembly at centromere|mitosis	chromosome, centromeric region|nucleoplasm	DNA binding				0						CTGATGGGACTTTTTTTTTGA	0.373	Ovarian(187;620 2054 7273 12043 20532)		NA											7	179	---	---	---	---	NA	NA	NA	NA	NA
RAPGEF6	51735	broad.mit.edu	37	5	130815368	130815369	+	Frame_Shift_Ins	INS	-	-	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr5:130815368_130815369insT	uc003kvn.1	-	16	2124_2125	c.1918_1919insA	c.(1918-1920)AGTfs	p.S640fs	RAPGEF6_uc003kvp.1_Frame_Shift_Ins_p.S690fs|RAPGEF6_uc003kvo.1_Frame_Shift_Ins_p.S640fs|RAPGEF6_uc010jdi.1_Frame_Shift_Ins_p.S640fs|RAPGEF6_uc010jdj.1_Frame_Shift_Ins_p.S640fs|RAPGEF6_uc003kvq.2_Frame_Shift_Ins_p.S357fs|RAPGEF6_uc003kvr.2_Frame_Shift_Ins_p.S640fs|RAPGEF6_uc011cxe.1_RNA|RAPGEF6_uc010jdk.2_Frame_Shift_Ins_p.S640fs	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	640					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		ATGGCGATTACTTTTTTTTTCA	0.366	Melanoma(168;435 1955 13113 13877 23213)		NA											10	291	---	---	---	---	NA	NA	NA	NA	NA
PBX2	5089	broad.mit.edu	37	6	32155055	32155056	+	Frame_Shift_Ins	INS	-	-	G	rs143029272	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr6:32155055_32155056insG	uc003oav.1	-	6	1258_1259	c.987_988insC	c.(985-990)CACAGCfs	p.H329fs	PBX2_uc003oaw.2_Frame_Shift_Ins_p.H329fs	NM_002586	NP_002577	P40425	PBX2_HUMAN	pre-B-cell leukemia homeobox 2	329_330							transcription factor binding			ovary(1)	1						CTGGTGCGGCTGTGGCCCCCCT	0.554			NA											8	149	---	---	---	---	NA	NA	NA	NA	NA
PCLO	27445	broad.mit.edu	37	7	82595145	82595146	+	Frame_Shift_Ins	INS	-	-	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr7:82595145_82595146insG	uc003uhx.2	-	4	4247_4248	c.3958_3959insC	c.(3958-3960)CAGfs	p.Q1320fs	PCLO_uc003uhv.2_Frame_Shift_Ins_p.Q1320fs	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1259					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGGCTGTGGCTGTTCTTTTATT	0.406			NA											9	243	---	---	---	---	NA	NA	NA	NA	NA
JHDM1D	80853	broad.mit.edu	37	7	139791810	139791810	+	Frame_Shift_Del	DEL	C	C	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chr7:139791810delC	uc003vvm.2	-	19	2529	c.2525delG	c.(2524-2526)AGTfs	p.S842fs	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	842					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					ATAATTCCTACTTTGTACCCT	0.448			NA											39	70	---	---	---	---	NA	NA	NA	NA	NA
DNASE1L1	1774	broad.mit.edu	37	X	153631085	153631087	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01	AGC	AGC	-	-	AGC	AGC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	6b4cde89-2c2e-4ede-b48b-48d9e7423c45	f4b8b2d5-acc7-4fd6-b852-c80fd79be99e	g.chrX:153631085_153631087delAGC	uc004fks.1	-	8	1061_1063	c.870_872delGCT	c.(868-873)CTGCTA>CTA	p.290_291LL>L	RPL10_uc004fkq.1_Intron|RPL10_uc004fkr.1_Intron|DNASE1L1_uc004fkt.1_In_Frame_Del_p.290_291LL>L|DNASE1L1_uc004fku.1_In_Frame_Del_p.290_291LL>L|DNASE1L1_uc004fkv.1_In_Frame_Del_p.290_291LL>L|DNASE1L1_uc004fkw.1_In_Frame_Del_p.290_291LL>L	NM_006730	NP_006721	P49184	DNSL1_HUMAN	deoxyribonuclease I-like 1 precursor	290_291					DNA catabolic process	endoplasmic reticulum	DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CAGGAGTGATAGCAGCAACAGAA	0.645			NA											18	32	---	---	---	---	NA	NA	NA	NA	NA
