Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SULF1	23213	broad.mit.edu	37	8	70488255	70488255	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:70488255G>T	ENST00000260128.4	+	6	940	c.223G>T	c.(223-225)Gcc>Tcc	p.A75S	SULF1_ENST00000402687.4_Missense_Mutation_p.A75S|SULF1_ENST00000419716.3_Missense_Mutation_p.A75S|SULF1_ENST00000458141.2_Missense_Mutation_p.A75S	NM_015170.2	NP_055985.2	Q8IWU6	SULF1_HUMAN	sulfatase 1	75					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			breast(2)|central_nervous_system(3)|endometrium(5)|kidney(3)|large_intestine(10)|lung(15)|ovary(3)|pancreas(2)|prostate(2)|skin(3)|upper_aerodigestive_tract(3)|urinary_tract(1)	52	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			ACATGGGGGGGCCACCTTCAT	0.502000													8	30					0.00621372	0.00676699	0.006214	1	0
CCDC33	80125	broad.mit.edu	37	15	74554835	74554835	+	Silent	SNP	G	G	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:74554835G>C	ENST00000321288.5	+	5	849	c.849G>C	c.(847-849)gtG>gtC	p.V283V	CCDC33_ENST00000398814.3_Silent_p.V80V			Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33	283	C2.						protein binding			breast(2)|central_nervous_system(2)|endometrium(1)|kidney(2)|large_intestine(2)|lung(17)|ovary(4)|pancreas(1)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(2)	39						TCACATCTGTGACCTCAGAGC	0.577000													3	24					0	0	0.004672	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767551	77767551	+	Silent	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:77767551C>A	ENST00000521891.2	+	10	8842	c.8394C>A	c.(8392-8394)acC>acA	p.T2798T	ZFHX4_ENST00000050961.6_Silent_p.T2753T|ZFHX4_ENST00000518282.1_Silent_p.T2772T|ZFHX4_ENST00000455469.2_Silent_p.T2753T	NM_024721.4	NP_078997.4	Q86UP3	ZFHX4_HUMAN	zinc finger homeobox 4	2753						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(3)|breast(11)|central_nervous_system(1)|endometrium(36)|haematopoietic_and_lymphoid_tissue(2)|kidney(15)|large_intestine(66)|liver(2)|lung(245)|ovary(11)|pancreas(3)|prostate(11)|skin(7)|upper_aerodigestive_tract(13)|urinary_tract(6)	432			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AAAATAAAACCGATTTTGATG	0.443000										HNSCC(33;0.089)			10	59					2.17888e-05	2.74954e-05	0.006214	1	0
CST9	128822	broad.mit.edu	37	20	23584335	23584335	+	Silent	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr20:23584335G>A	ENST00000376971.3	-	2	303	c.292C>T	c.(292-294)Ctg>Ttg	p.L98L		NM_001008693.2	NP_001008693.2	Q5W186	CST9_HUMAN	cystatin 9 (testatin)	98						extracellular region	cysteine-type endopeptidase inhibitor activity			central_nervous_system(2)|large_intestine(4)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)	12	Colorectal(13;0.0993)					GTTTGGCGCAGTTGCAGATTC	0.463000													16	88					0	0	0.007413	0	0
DHTKD1	55526	broad.mit.edu	37	10	12160768	12160768	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:12160768G>A	ENST00000263035.4	+	15	2485	c.2423G>A	c.(2422-2424)tGc>tAc	p.C808Y		NM_018706.5	NP_061176.3	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain containing 1	808					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			breast(1)|central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(11)|liver(2)|lung(14)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|soft_tissue(1)|stomach(3)|upper_aerodigestive_tract(1)	44		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			CTCGTGTTCTGCTCCGGCAAA	0.478000													8	827					0	0	0.004482	0	0
CDHR2	54825	broad.mit.edu	37	5	176017474	176017474	+	Silent	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:176017474G>A	ENST00000510636.1	+	27	3676	c.3402G>A	c.(3400-3402)ggG>ggA	p.G1134G	CDHR2_ENST00000261944.5_Silent_p.G1134G|CDHR2_ENST00000506348.1_Silent_p.G1134G	NM_001171976.1	NP_001165447.1	Q9BYE9	CDHR2_HUMAN	cadherin-related family member 2	1134					homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			breast(3)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(4)|large_intestine(8)|liver(1)|lung(23)|ovary(3)|prostate(5)|skin(4)|urinary_tract(1)	56						TGCAGCTGGGGCTGGTGGTGC	0.637000													10	20					0	0	0.006214	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157197	26157197	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chrX:26157197T>A	ENST00000325250.1	+	2	282	c.95T>A	c.(94-96)gTg>gAg	p.V32E		NM_173699.3	NP_775970.1	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	32							protein binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(5)|lung(17)|skin(2)|stomach(1)|urinary_tract(2)	33						CAGGCCACTGTGGCAGAAGGA	0.557000													8	34					0	0	0.004482	0	0
POU2F1	5451	broad.mit.edu	37	1	167341161	167341161	+	Missense_Mutation	SNP	C	C	T	rs144698259	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:167341161C>T	ENST00000367862.5	+	5	492	c.257C>T	c.(256-258)tCt>tTt	p.S86F	POU2F1_ENST00000452019.1_Missense_Mutation_p.S74F|POU2F1_ENST00000541643.3_Missense_Mutation_p.S74F|POU2F1_ENST00000420254.3_Missense_Mutation_p.S74F|POU2F1_ENST00000429375.2_Missense_Mutation_p.S97F|POU2F1_ENST00000367865.1_3'UTR|POU2F1_ENST00000367866.2_Missense_Mutation_p.S97F	NM_001198783.1	NP_001185712.1	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	74					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)|central_nervous_system(2)|endometrium(4)|kidney(2)|large_intestine(3)|liver(2)|lung(7)|ovary(2)|prostate(2)|skin(3)|urinary_tract(1)	30						CAGTCTAAATCTAATGAAGAA	0.453000													19	188					0	0	0.007413	0	0
PIP4K2A	5305	broad.mit.edu	37	10	22880659	22880659	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:22880659C>A	ENST00000376573.4	-	4	619	c.391G>T	c.(391-393)Gga>Tga	p.G131*	PIP4K2A_ENST00000545335.1_Nonsense_Mutation_p.G72*|PIP4K2A_ENST00000422321.1_5'UTR	NM_005028.4	NP_005019.2	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	131	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			endometrium(4)|kidney(13)|large_intestine(4)|lung(6)|ovary(1)|skin(1)	29						AAACGAGCTCCACTGCGGGCC	0.532000													4	33					0.00024832	0.000290315	0.009096	1	0
NPY4R	5540	broad.mit.edu	37	10	47087599	47087599	+	Silent	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:47087599G>A	ENST00000374312.1	+	3	1235	c.816G>A	c.(814-816)gtG>gtA	p.V272V	NPY4R_ENST00000395716.1_Silent_p.V272V	NM_005972.4	NP_005963.3			neuropeptide Y receptor Y4																		TGATGGTGGTGGCCTTTGCTG	0.597000													5	142					0	0	0.021553	0	0
SPHKAP	80309	broad.mit.edu	37	2	228855814	228855814	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:228855814C>A	ENST00000392056.3	-	11	4907	c.4861G>T	c.(4861-4863)Gat>Tat	p.D1621Y	SPHKAP_ENST00000344657.5_Missense_Mutation_p.D1592Y	NM_001142644.1	NP_001136116.1	Q2M3C7	SPKAP_HUMAN	SPHK1 interactor, AKAP domain containing	1621						cytoplasm	protein binding			NS(5)|breast(5)|central_nervous_system(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(3)|kidney(12)|large_intestine(25)|lung(86)|ovary(6)|pancreas(1)|prostate(6)|skin(17)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	185		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGCTCGGCATCTGGACACTCT	0.542000													8	33					0.000157383	0.000185363	0.003080	1	0
MOCS3	27304	broad.mit.edu	37	20	49575867	49575867	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr20:49575867C>T	ENST00000244051.1	+	1	505	c.488C>T	c.(487-489)cCa>cTa	p.P163L		NM_014484.3	NP_055299.1	O95396	MOCS3_HUMAN	molybdenum cofactor synthesis 3	163					enzyme active site formation via L-cysteine persulfide|Mo-molybdopterin cofactor biosynthetic process|tRNA thio-modification|tRNA wobble uridine modification|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|nucleotidyltransferase activity|protein binding|thiosulfate sulfurtransferase activity|URM1 activating enzyme activity			NS(1)|endometrium(1)|kidney(1)|large_intestine(2)|liver(2)|lung(8)|ovary(2)|prostate(1)|skin(2)|upper_aerodigestive_tract(4)	24						GCCCTTACGCCAGCCACTGCC	0.642000													4	47					0	0	0.009096	0	0
STK19	8859	broad.mit.edu	37	6	31948502	31948502	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:31948502C>G	ENST00000375331.2	+	7	1139	c.973C>G	c.(973-975)Cgg>Ggg	p.R325G	STK19_ENST00000375333.2_Missense_Mutation_p.R329G	NM_004197.1	NP_004188.1	P49842	STK19_HUMAN	serine/threonine kinase 19	329						nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			skin(5)|upper_aerodigestive_tract(2)	7						GCTCCTGGGCCGGCGGGCGCC	0.632000													4	45					0	0	0.001984	0	0
IGLV3-27	28791	broad.mit.edu	37	22	23011172	23011172	+	RNA	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr22:23011172C>T	ENST00000390304.2	+	0	273																											GATCCCTGAGCGATTCTCCGG	0.562000													3	24					0	0	0.004672	0	0
IGHV4OR15-8	28317	broad.mit.edu	37	15	22473345	22473345	+	RNA	SNP	G	G	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:22473345G>C	ENST00000557788.2	-	0	8																											AGAACCACAGGTGTTTCATGT	0.512000													3	37					0	0	0.004672	0	0
SP140	11262	broad.mit.edu	37	2	231090581	231090581	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:231090581G>T	ENST00000392045.3	+	1	136	c.22G>T	c.(22-24)Ggg>Tgg	p.G8W	SP140_ENST00000486687.2_Missense_Mutation_p.G8W|SP140_ENST00000343805.6_Missense_Mutation_p.G8W|SP140_ENST00000350136.5_5'UTR|SP140_ENST00000373645.3_Missense_Mutation_p.G8W|SP140_ENST00000417495.3_Missense_Mutation_p.G8W|SP140_ENST00000420434.3_Missense_Mutation_p.G8W	NM_007237.4	NP_009168.4	Q13342	LY10_HUMAN	SP140 nuclear body protein	8					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|kidney(1)|large_intestine(3)|lung(5)|ovary(1)|skin(1)	12		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GGGCCAGCAGGGGCAGATGGC	0.552000													19	70					3.51602e-12	5.37545e-12	0.008871	1	0
CEACAM7	1087	broad.mit.edu	37	19	42190824	42190824	+	Silent	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr19:42190824C>A	ENST00000006724.3	-	2	594	c.393G>T	c.(391-393)gtG>gtT	p.V131V	CEACAM7_ENST00000401731.1_Silent_p.V131V|CEACAM7_ENST00000602225.1_Silent_p.V131V|CEACAM7_ENST00000599715.1_5'UTR|CEACAM7_ENST00000338196.4_Silent_p.V131V	NM_006890.3	NP_008821.1	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion molecule 7	131	Ig-like V-type.					anchored to membrane|integral to membrane|plasma membrane				breast(1)|endometrium(1)|large_intestine(3)|lung(6)|ovary(2)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)	18				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		CTTCTTCATTCACAAGATTTT	0.458000													17	87					1.33834e-09	1.91708e-09	0.007413	1	0
ZNF835	90485	broad.mit.edu	37	19	57175469	57175469	+	Silent	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr19:57175469G>A	ENST00000537055.2	-	2	1329	c.1098C>T	c.(1096-1098)gaC>gaT	p.D366D		NM_001005850.2	NP_001005850.2			zinc finger protein 835											endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(10)|lung(22)|pancreas(3)|prostate(3)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)	47						GCTTGCCGCAGTCGTGGCAGG	0.697000													3	23					0	0	0.009096	0	0
OR51G1	79324	broad.mit.edu	37	11	4944831	4944831	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:4944831T>C	ENST00000321961.2	-	1	806	c.739A>G	c.(739-741)Atc>Gtc	p.I247V	MMP26_ENST00000380390.1_Intron|MMP26_ENST00000477339.1_Intron	NM_001005237.1	NP_001005237.1	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G, member 1	247					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|endometrium(1)|large_intestine(2)|lung(11)|ovary(2)|prostate(3)|skin(4)|soft_tissue(1)	25		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACAGCACAGATATGAGAGACA	0.537000													6	75					0	0	0.021553	0	0
C15orf52	388115	broad.mit.edu	37	15	40631027	40631027	+	Silent	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:40631027C>T	ENST00000559313.1	-	4	456	c.441G>A	c.(439-441)gaG>gaA	p.E147E		NM_207380.2	NP_997263.2	Q6ZUT6	CO052_HUMAN	chromosome 15 open reading frame 52	147										central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(9)|urinary_tract(1)	19		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		CCTCAGCATCCTCATCCTCAA	0.582000													12	44					0	0	0.010729	0	0
CEACAM7	1087	broad.mit.edu	37	19	42190826	42190826	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr19:42190826C>A	ENST00000006724.3	-	2	592	c.391G>T	c.(391-393)Gtg>Ttg	p.V131L	CEACAM7_ENST00000401731.1_Missense_Mutation_p.V131L|CEACAM7_ENST00000602225.1_Missense_Mutation_p.V131L|CEACAM7_ENST00000599715.1_5'UTR|CEACAM7_ENST00000338196.4_Missense_Mutation_p.V131L	NM_006890.3	NP_008821.1	Q14002	CEAM7_HUMAN	carcinoembryonic antigen-related cell adhesion molecule 7	131	Ig-like V-type.					anchored to membrane|integral to membrane|plasma membrane				breast(1)|endometrium(1)|large_intestine(3)|lung(6)|ovary(2)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)	18				OV - Ovarian serous cystadenocarcinoma(3;0.0027)|all cancers(3;0.00979)|Epithelial(262;0.0366)		TCTTCATTCACAAGATTTTCT	0.463000													18	86					1.01871e-10	1.48601e-10	0.008871	1	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:38654432A>G	ENST00000494540.1	+	0	599					NR_003086.1																						TCATCTCGCAATGCAAGGAAA	0.453000													5	82					0	0	0.014758	0	0
CPXM2	119587	broad.mit.edu	37	10	125514203	125514203	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:125514203C>T	ENST00000241305.3	-	13	2147	c.1993G>A	c.(1993-1995)Ggc>Agc	p.G665S	CPXM2_ENST00000368854.3_5'UTR	NM_198148.2	NP_937791.2	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	665					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			NS(1)|autonomic_ganglia(1)|breast(1)|endometrium(7)|kidney(2)|large_intestine(13)|lung(15)|ovary(2)|prostate(2)|skin(3)	47		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TGGTTAATGCCTTCTACGGAG	0.428000													9	50					0	0	0.006214	0	0
ROR1	4919	broad.mit.edu	37	1	64644284	64644284	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:64644284C>G	ENST00000371079.1	+	9	2935	c.2560C>G	c.(2560-2562)Cgg>Ggg	p.R854G	ROR1_ENST00000545203.1_Missense_Mutation_p.R305G	NM_005012.3	NP_005003.2	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	854	Ser/Thr-rich.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			breast(7)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(14)|lung(10)|ovary(6)|prostate(1)|skin(5)|stomach(2)|upper_aerodigestive_tract(1)	51						TCCCAAGAGTCGGTCCCCAAG	0.542000													5	46					0	0	0.014758	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320649	79320649	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr9:79320649A>C	ENST00000428286.1	-	8	6664	c.5464T>G	c.(5464-5466)Tct>Gct	p.S1822A	PRUNE2_ENST00000376718.3_Missense_Mutation_p.S2181A			Q8WUY3	PRUN2_HUMAN	prune homolog 2 (Drosophila)	2181					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity			endometrium(1)|kidney(4)|large_intestine(3)|lung(7)|prostate(1)	16						GCGGGCTGAGAGGAGCCCTTT	0.478000													12	56					0	0	0.010729	0	0
GABRB3	2562	broad.mit.edu	37	15	27184492	27184492	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:27184492A>T	ENST00000541819.2	-	1	194	c.92T>A	c.(91-93)aTt>aAt	p.I31N	GABRA5_ENST00000335625.5_Intron|GABRA5_ENST00000355395.5_Intron|GABRA5_ENST00000400081.3_Intron			P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta 3	0					synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			NS(2)|breast(1)|central_nervous_system(1)|cervix(4)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(11)|liver(1)|lung(41)|ovary(1)|skin(1)|upper_aerodigestive_tract(2)	68		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CGCCAATGAAATGCCCCCGAT	0.577000													11	74					0	0	0.028581	0	0
PLXNA4	91584	broad.mit.edu	37	7	131817896	131817896	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:131817896G>T	ENST00000359827.3	-	31	6463	c.5501C>A	c.(5500-5502)gCt>gAt	p.A1834D	PLXNA4_ENST00000321063.4_Missense_Mutation_p.A1834D			Q9HCM2	PLXA4_HUMAN	plexin A4	1834						integral to membrane|intracellular|plasma membrane				NS(1)|breast(1)|endometrium(3)|kidney(4)|large_intestine(14)|lung(17)|ovary(1)|prostate(2)|skin(1)|stomach(1)	45						GGACTGCTCAGCCAGGTATGC	0.507000													4	95					0.000602214	0.000683943	0.014758	1	0
MUC16	94025	broad.mit.edu	37	19	8996373	8996373	+	Silent	SNP	A	A	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr19:8996373A>G	ENST00000397910.4	-	61	41402	c.41199T>C	c.(41197-41199)aaT>aaC	p.N13733N	MUC16_ENST00000380951.5_Silent_p.N374N	NM_024690.2	NP_078966.2	Q8WXI7	MUC16_HUMAN	mucin 16, cell surface associated	13735	SEA 11.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			NS(9)|autonomic_ganglia(1)|breast(26)|central_nervous_system(11)|cervix(1)|endometrium(46)|haematopoietic_and_lymphoid_tissue(5)|kidney(35)|large_intestine(91)|liver(1)|lung(278)|ovary(17)|pancreas(2)|prostate(17)|skin(18)|soft_tissue(1)|stomach(8)|upper_aerodigestive_tract(16)|urinary_tract(7)	590						GCTCAGTGATATTGTGGGTCA	0.557000													6	353					0	0	0.006214	0	0
LRP1B	53353	broad.mit.edu	37	2	141027872	141027872	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:141027872C>A	ENST00000389484.3	-	86	14157	c.13186G>T	c.(13186-13188)Ggc>Tgc	p.G4396C		NM_018557.2	NP_061027.2	Q9NZR2	LRP1B_HUMAN	low density lipoprotein receptor-related protein 1B	4396	EGF-like 14.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			NS(5)|autonomic_ganglia(1)|biliary_tract(1)|breast(3)|central_nervous_system(7)|endometrium(25)|haematopoietic_and_lymphoid_tissue(10)|kidney(27)|large_intestine(98)|liver(4)|lung(337)|ovary(15)|pancreas(6)|prostate(11)|skin(30)|stomach(2)|upper_aerodigestive_tract(19)|urinary_tract(5)	606		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TAACAGTAGCCATCACATAAC	0.403000										TSP Lung(27;0.18)			12	56					6.40141e-05	7.82942e-05	0.010729	1	0
FLG	2312	broad.mit.edu	37	1	152283735	152283735	+	Silent	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:152283735C>A	ENST00000368799.1	-	3	3662	c.3627G>T	c.(3625-3627)ggG>ggT	p.G1209G	FLG-AS1_ENST00000593011.1_RNA|FLG-AS1_ENST00000420707.1_RNA	NM_002016.1	NP_002007.1	P20930	FILA_HUMAN	filaggrin	1209	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			autonomic_ganglia(1)|breast(13)|central_nervous_system(5)|cervix(2)|endometrium(38)|haematopoietic_and_lymphoid_tissue(1)|kidney(16)|large_intestine(57)|lung(211)|ovary(13)|pancreas(1)|prostate(15)|skin(24)|stomach(5)|upper_aerodigestive_tract(10)|urinary_tract(12)	424	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCCTGACTGCCCATGGGAGG	0.557000									Ichthyosis				34	196					1.57019e-19	2.49661e-19	0.007835	1	0
PIK3C2A	5286	broad.mit.edu	37	11	17169144	17169144	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:17169144G>C	ENST00000265970.7	-	5	1479	c.1480C>G	c.(1480-1482)Caa>Gaa	p.Q494E	PIK3C2A_ENST00000531428.1_Intron|PIK3C2A_ENST00000540361.1_Missense_Mutation_p.Q114E	NM_002645.2	NP_002636.2	O00443	P3C2A_HUMAN	phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha	494					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			central_nervous_system(4)|endometrium(5)|kidney(5)|large_intestine(7)|lung(24)|ovary(3)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	58					Phosphatidylserine(DB00144)	CGACAGTTTTGAATATGCTCA	0.333000													3	23					0	0	0.004672	0	0
OPA3	80207	broad.mit.edu	37	19	46056784	46056784	+	Silent	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr19:46056784C>T	ENST00000263275.4	-	2	582	c.528G>A	c.(526-528)gcG>gcA	p.A176A	OPA3_ENST00000323060.3_Intron|OPA3_ENST00000544371.1_Silent_p.A123A	NM_025136.3	NP_079412.1	Q9H6K4	OPA3_HUMAN	optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)	176					response to stimulus|visual perception	mitochondrion				cervix(1)|large_intestine(1)|lung(2)	4		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00778)|GBM - Glioblastoma multiforme(486;0.0976)|Epithelial(262;0.242)		ATTTCTTGGACGCAGGCACTG	0.637000													12	45					0	0	0.010729	0	0
DDOST	1650	broad.mit.edu	37	1	20981967	20981967	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:20981967A>G	ENST00000375048.3	-	5	673	c.568T>C	c.(568-570)Tca>Cca	p.S190P	DDOST_ENST00000415136.2_Missense_Mutation_p.S153P|DDOST_ENST00000602624.2_Missense_Mutation_p.S173P	NM_005216.4	NP_005207.2	P39656	OST48_HUMAN	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic)	190					innate immune response|post-translational protein modification|response to cytokine stimulus|T cell activation	integral to membrane|microsome|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			endometrium(2)|kidney(1)|large_intestine(6)|lung(2)|ovary(1)|skin(1)	13		all_lung(284;2.98e-05)|Lung NSC(340;3.25e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000141)|Kidney(64;0.000177)|GBM - Glioblastoma multiforme(114;0.00046)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TTTAGAGATGATTTCCCAACG	0.507000													7	55					0	0	0.003080	0	0
KCND3	3752	broad.mit.edu	37	1	112525025	112525025	+	Silent	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:112525025G>A	ENST00000369697.1	-	1	393	c.324C>T	c.(322-324)taC>taT	p.Y108Y	KCND3_ENST00000302127.4_Silent_p.Y108Y|KCND3_ENST00000315987.2_Silent_p.Y108Y			Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related subfamily, member 3	108						sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			NS(1)|breast(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(16)|lung(9)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(4)|urinary_tract(2)	49		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		AGATGCACTCGTAGCGCGGGT	0.612000													17	68					0	0	0.006122	0	0
CD3D	915	broad.mit.edu	37	11	118210558	118210558	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:118210558A>G	ENST00000300692.4	-	3	474	c.338T>C	c.(337-339)aTt>aCt	p.I113T	CD3D_ENST00000529594.1_Missense_Mutation_p.I40T|CD3D_ENST00000392884.2_Intron	NM_000732.4	NP_000723.1	P04234	CD3D_HUMAN	CD3d molecule, delta (CD3-TCR complex)	113					positive thymic T cell selection|T cell costimulation|T cell receptor signaling pathway	cytoplasm|integral to membrane	protein heterodimerization activity			large_intestine(1)|lung(4)|ovary(1)|prostate(1)|skin(2)	9	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		CAGAGTGGCAATGACATCAGT	0.557000													3	36					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179578798	179578798	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:179578798A>T	ENST00000589042.1	-	92	26811	c.26587T>A	c.(26587-26589)Tgg>Agg	p.W8863R	TTN_ENST00000591111.1_Missense_Mutation_p.W8546R|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000460472.2_Intron|TTN-AS1_ENST00000431752.1_RNA|TTN_ENST00000359218.5_Intron|TTN_ENST00000342992.6_Missense_Mutation_p.W7619R|TTN_ENST00000342175.6_Intron	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	8546	Ig-like 71.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTTAAACCACTTAGTACTG	0.418000													12	55					0	0	0.013537	0	0
HSPG2	3339	broad.mit.edu	37	1	22213794	22213794	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:22213794G>A	ENST00000374695.3	-	9	1071	c.992C>T	c.(991-993)cCc>cTc	p.P331L		NM_005529.5	NP_005520.4	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2	331	LDL-receptor class A 3.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			breast(6)|central_nervous_system(1)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(9)|large_intestine(15)|liver(1)|lung(44)|ovary(10)|pancreas(1)|prostate(10)|skin(9)|upper_aerodigestive_tract(3)|urinary_tract(3)	127		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	ATTCCCGCAGGGGAACTCGTT	0.647000													3	25					0	0	0.004672	0	0
IL27	246778	broad.mit.edu	37	16	28515315	28515315	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr16:28515315G>A	ENST00000356897.1	-	2	110	c.88C>T	c.(88-90)Cca>Tca	p.P30S		NM_145659.3	NP_663634.2	Q8NEV9	IL27A_HUMAN	interleukin 27	30					inflammatory response|innate immune response|positive regulation of interferon-gamma biosynthetic process|regulation of defense response to virus|regulation of T cell proliferation|regulation of T-helper 1 cell differentiation	extracellular space	cytokine activity|interleukin-27 receptor binding			endometrium(1)|kidney(1)|large_intestine(1)|lung(6)|prostate(1)	10						GGGGGCCTTGGGAATCCCCAG	0.632000													7	31					0	0	0.001984	0	0
CYP2E1	1571	broad.mit.edu	37	10	135346288	135346288	+	Silent	SNP	T	T	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:135346288T>C	ENST00000463117.2	+	7	1013	c.741T>C	c.(739-741)tcT>tcC	p.S247S	CYP2E1_ENST00000252945.3_Silent_p.S247S|SPRN_ENST00000541506.1_Intron			P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E, polypeptide 1	247					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			NS(1)|central_nervous_system(3)|endometrium(1)|kidney(4)|large_intestine(6)|liver(2)|lung(7)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	30		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	AGTATGTGTCTGAAAGGGTGA	0.493000									Naso-/Oropharyngeal/Laryngeal Cancer, Familial Clustering of				9	35					0	0	0.004482	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21325613	21325613	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:21325613T>A	ENST00000256958.2	+	3	210	c.114T>A	c.(112-114)ttT>ttA	p.F38L		NM_006446.4	NP_006437.3	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family, member 1B1	38					bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			breast(1)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(14)|lung(33)|ovary(3)|pancreas(1)|prostate(1)|skin(8)|upper_aerodigestive_tract(1)	70					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	CACTCAGCTTTATTGCTAAGA	0.368000													23	65					0	0	0.018920	0	0
ROBO2	6092	broad.mit.edu	37	3	77626672	77626672	+	Silent	SNP	A	A	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:77626672A>C	ENST00000461745.1	+	15	3135	c.2235A>C	c.(2233-2235)gtA>gtC	p.V745V	ROBO2_ENST00000332191.8_Silent_p.V745V|ROBO2_ENST00000487694.3_Silent_p.V761V	NM_002942.4	NP_002933.1	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2 (Drosophila)	745	Fibronectin type-III 3.				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			NS(1)|biliary_tract(5)|breast(3)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(23)|liver(1)|lung(52)|ovary(2)|pancreas(2)|prostate(5)|skin(8)|upper_aerodigestive_tract(1)	117				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		CTGTCACTGTACTGACAGTTG	0.438000													23	46					0	0	0.018920	0	0
TPD52L3	89882	broad.mit.edu	37	9	6328730	6328730	+	Silent	SNP	C	C	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr9:6328730C>G	ENST00000344545.5	+	1	382	c.135C>G	c.(133-135)acC>acG	p.T45T	TPD52L3_ENST00000381428.1_Silent_p.T45T|TPD52L3_ENST00000314556.3_Silent_p.T45T	NM_033516.5	NP_277051.3	Q96J77	TPD55_HUMAN	tumor protein D52-like 3	45							protein binding			large_intestine(1)|lung(9)|skin(1)	11		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0198)|Lung(218;0.1)		AAATTGTAACCCTACGCCACG	0.502000													21	53					0	0	0.010504	0	0
GOLGA3	2802	broad.mit.edu	37	12	133358913	133358913	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:133358913C>A	ENST00000204726.3	-	17	3992	c.3434G>T	c.(3433-3435)aGg>aTg	p.R1145M	GOLGA3_ENST00000456883.2_Missense_Mutation_p.R1145M|GOLGA3_ENST00000450791.2_Missense_Mutation_p.R1145M	NM_005895.3	NP_005886.2	Q08378	GOGA3_HUMAN	golgin A3	1145					intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			breast(1)|central_nervous_system(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(4)|lung(33)|ovary(3)|pancreas(1)|prostate(4)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	64	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		GTCTGCCTCCCTCTTGGCCAA	0.542000													24	116					4.4004e-07	6.03159e-07	0.018920	1	0
MRVI1	10335	broad.mit.edu	37	11	10648125	10648125	+	Silent	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:10648125G>T	ENST00000547195.1	-	8	983	c.483C>A	c.(481-483)gtC>gtA	p.V161V	MRVI1_ENST00000424001.1_5'UTR|MRVI1_ENST00000545852.1_5'UTR|MRVI1_ENST00000558540.1_5'UTR|MRVI1_ENST00000527509.2_Silent_p.V161V|MRVI1_ENST00000534266.2_5'UTR|MRVI1_ENST00000436272.1_Silent_p.V225V|MRVI1_ENST00000423302.2_Silent_p.V252V|MRVI1_ENST00000531107.1_Silent_p.V244V|MRVI1_ENST00000421747.1_Silent_p.V243V|MRVI1_ENST00000541483.1_Intron|MRVI1_ENST00000552103.1_Silent_p.V161V	NM_001100163.2|NM_001206881.1	NP_001093633.1|NP_001193810.1	Q9Y6F6	MRVI1_HUMAN	murine retrovirus integration site 1 homolog	225	Interaction with PRKG1 (By similarity).				platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				central_nervous_system(2)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(5)|lung(4)|ovary(2)|prostate(2)	22				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		GCCCTTTGGGGACGTTCTGAA	0.567000													4	36					2.56e-06	3.4205e-06	0.009096	1	0
ABCB4	5244	broad.mit.edu	37	7	87081014	87081014	+	Silent	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:87081014G>T	ENST00000265723.4	-	7	744	c.633C>A	c.(631-633)atC>atA	p.I211I	ABCB4_ENST00000545634.1_Silent_p.I211I|ABCB4_ENST00000453593.1_Silent_p.I211I|ABCB4_ENST00000358400.3_Silent_p.I211I|ABCB4_ENST00000359206.3_Silent_p.I211I	NM_000443.3|NM_018849.2	NP_000434.1|NP_061337.1	P21439	MDR3_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP), member 4	211	ABC transmembrane type-1 1.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			breast(5)|endometrium(7)|kidney(2)|large_intestine(15)|lung(32)|ovary(4)|pancreas(2)|prostate(4)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	77	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TCCATCCTCTGATGAATCCCA	0.448000													19	71					5.03518e-11	7.48219e-11	0.007413	1	0
NRG3	10718	broad.mit.edu	37	10	84718766	84718766	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:84718766C>T	ENST00000372142.2	+	7	830	c.556C>T	c.(556-558)Ctc>Ttc	p.L186F	NRG3_ENST00000537893.1_Missense_Mutation_p.L57F|NRG3_ENST00000404547.1_Missense_Mutation_p.L407F|NRG3_ENST00000404576.2_Missense_Mutation_p.L211F|NRG3_ENST00000545131.1_Missense_Mutation_p.L57F|NRG3_ENST00000372141.2_Missense_Mutation_p.L407F|NRG3_ENST00000556918.1_Missense_Mutation_p.L237F	NM_001165973.1	NP_001159445.1	P56975	NRG3_HUMAN	neuregulin 3	407	Ser/Thr-rich.				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			breast(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(8)|lung(41)|ovary(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(2)	69				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		AAGCTACAGTCTCAAAGCATC	0.428000													18	75					0	0	0.004990	0	0
TRIM58	25893	broad.mit.edu	37	1	248039392	248039392	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:248039392A>T	ENST00000366481.3	+	6	1110	c.1062A>T	c.(1060-1062)gaA>gaT	p.E354D	OR2W3_ENST00000537741.1_Intron	NM_015431.3	NP_056246.3	Q8NG06	TRI58_HUMAN	tripartite motif containing 58	354	B30.2/SPRY.					intracellular	zinc ion binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(4)|lung(39)|ovary(4)|pancreas(1)|skin(7)|stomach(1)	63	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TGGTGGGAGAAGGAGCAGAGT	0.567000													22	131					0	0	0.014323	0	0
LINC01410	103352539	broad.mit.edu	37	9	66458198	66458198	+	RNA	SNP	C	C	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr9:66458198C>G	ENST00000424345.1	+	0	67				RNA5SP283_ENST00000365604.1_RNA																							taaccagtcccgaccctgctt	0.622000													6	34					0	0	0.001984	0	0
C11orf53	341032	broad.mit.edu	37	11	111154946	111154946	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:111154946C>A	ENST00000280325.4	+	3	300	c.153C>A	c.(151-153)agC>agA	p.S51R		NM_198498.1	NP_940900.1	Q8IXP5	CK053_HUMAN	chromosome 11 open reading frame 53	51										endometrium(1)|large_intestine(2)|lung(3)|skin(2)	8		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		CAGGGCAGAGCCATGCGGCTC	0.612000													27	119					1.26454e-06	1.70392e-06	0.027356	1	0
S100A7L2	645922	broad.mit.edu	37	1	153410770	153410770	+	Silent	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:153410770G>A	ENST00000368725.2	-	2	68	c.69C>T	c.(67-69)gaC>gaT	p.D23D		NM_001045479.1	NP_001038944.2			S100 calcium binding protein A7-like 2											NS(1)|large_intestine(2)|lung(2)|ovary(1)|prostate(1)|skin(1)	8	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCGCGACTATGTCCAACATGA	0.423000													15	76					0	0	0.028581	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319507	21319507	+	Silent	SNP	C	C	A	rs143946927	byFrequency	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:21319507C>A	ENST00000583088.1	+	3	1748	c.853C>A	c.(853-855)Cgg>Agg	p.R285R	KCNJ12_ENST00000331718.5_Silent_p.R285R	NM_021012.4	NP_066292.2			potassium inwardly-rectifying channel, subfamily J, member 12											NS(1)|breast(4)|endometrium(4)|kidney(1)|large_intestine(5)|lung(39)|ovary(5)|skin(8)|stomach(3)	70				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)		CGGCATCAGCCGGCAGGACCT	0.622000										Prostate(3;0.18)			4	37					1.23904e-05	1.57606e-05	0.014758	1	0
ARMC3	219681	broad.mit.edu	37	10	23257339	23257339	+	Silent	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:23257339C>A	ENST00000298032.5	+	8	921	c.837C>A	c.(835-837)ctC>ctA	p.L279L	ARMC3_ENST00000376528.4_Silent_p.L16L|ARMC3_ENST00000409983.3_Silent_p.L279L|ARMC3_ENST00000409049.3_Silent_p.L279L	NM_173081.3	NP_775104.2	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	279							binding			breast(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(8)|lung(24)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	47						TTAAAAAGCTCCTGTCATTTG	0.383000													6	37					3.59834e-05	4.505e-05	0.021553	1	0
FNDC9	408263	broad.mit.edu	37	5	156769987	156769987	+	Silent	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:156769987C>T	ENST00000312349.4	-	2	745	c.558G>A	c.(556-558)aaG>aaA	p.K186K	CYFIP2_ENST00000435847.2_Intron|CYFIP2_ENST00000541131.1_Intron|CYFIP2_ENST00000377576.3_Intron|CYFIP2_ENST00000522463.1_Intron|CYFIP2_ENST00000442283.2_Intron|CYFIP2_ENST00000318218.6_Intron|CYFIP2_ENST00000521420.1_Intron|CYFIP2_ENST00000347377.6_Intron	NM_001001343.3	NP_001001343.2	Q8TBE3	FNDC9_HUMAN	fibronectin type III domain containing 9	186						integral to membrane				central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(1)|prostate(1)|skin(1)|urinary_tract(1)	9						CTCTGGAGTTCTTGCGTGGCA	0.622000											OREG0016977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	150					0	0	0.008871	0	0
ANKRD20A8P	729171	broad.mit.edu	37	2	95513820	95513820	+	RNA	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:95513820C>T	ENST00000432432.2	-	0	791					NR_040113.1																						ATGTCTTGAGCGAAGACATCA	0.358000													9	279					0	0	0.013537	0	0
ZNF470	388566	broad.mit.edu	37	19	57089313	57089313	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr19:57089313G>A	ENST00000330619.8	+	6	2202	c.1516G>A	c.(1516-1518)Gag>Aag	p.E506K	ZNF470_ENST00000601902.1_Intron|ZNF470_ENST00000391709.3_Missense_Mutation_p.E506K	NM_001001668.3	NP_001001668.3	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	506					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(7)|large_intestine(12)|lung(11)|ovary(1)|pancreas(3)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	41		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		TCATACTGGAGAGAAACCTTA	0.443000													18	56					0	0	0.004990	0	0
HOXA2	3199	broad.mit.edu	37	7	27140509	27140509	+	Missense_Mutation	SNP	G	G	T	rs138940688	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:27140509G>T	ENST00000222718.5	-	2	1277	c.967C>A	c.(967-969)Cag>Aag	p.Q323K		NM_006735.3	NP_006726.1	O43364	HXA2_HUMAN	homeobox A2	323						nucleus	sequence-specific DNA binding transcription factor activity			breast(3)|cervix(1)|kidney(1)|large_intestine(6)|lung(9)|ovary(1)|skin(1)	22						CTAAAGTCCTGCAAAGAGGGG	0.527000													28	66					8.24728e-16	1.29833e-15	0.024334	1	0
KCNB2	9312	broad.mit.edu	37	8	73480054	73480054	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:73480054C>T	ENST00000523207.1	+	2	673	c.85C>T	c.(85-87)Cgg>Tgg	p.R29W		NM_004770.2	NP_004761.2	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related subfamily, member 2	29					regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding	p.R29W(1)		NS(1)|breast(4)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(20)|liver(2)|lung(31)|ovary(2)|pancreas(3)|prostate(2)|skin(8)|upper_aerodigestive_tract(4)|urinary_tract(1)	85	Breast(64;0.137)		Epithelial(68;0.105)			GGACATTATCCGGAGCAAAAC	0.552000													6	290					0	0	0.021553	0	0
DTX2	113878	broad.mit.edu	37	7	76112337	76112337	+	Silent	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:76112337C>T	ENST00000324432.5	+	5	1291	c.781C>T	c.(781-783)Ctg>Ttg	p.L261L	DTX2_ENST00000446820.2_Silent_p.L261L|DTX2_ENST00000446600.1_Silent_p.L170L|DTX2_ENST00000307569.8_Silent_p.L261L|DTX2_ENST00000430490.2_Silent_p.L261L|DTX2_ENST00000413936.2_Silent_p.L261L	NM_020892.2	NP_065943.2	Q86UW9	DTX2_HUMAN	deltex homolog 2 (Drosophila)	261					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			NS(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(14)|ovary(1)|skin(1)|stomach(2)	27						TGCGCCCAGGCTGAACACCAC	0.687000													8	89					0	0	0.003080	0	0
XIRP2	129446	broad.mit.edu	37	2	168100767	168100767	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:168100767C>A	ENST00000409195.1	+	9	2954	c.2865C>A	c.(2863-2865)aaC>aaA	p.N955K	XIRP2_ENST00000420519.1_Intron|XIRP2_ENST00000409728.1_Intron|XIRP2_ENST00000295237.9_Missense_Mutation_p.N955K|XIRP2_ENST00000409273.1_Missense_Mutation_p.N733K|XIRP2_ENST00000409043.1_Intron|XIRP2_ENST00000409756.2_Intron|XIRP2_ENST00000409605.1_Intron	NM_152381.5	NP_689594.4	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2	780					actin cytoskeleton organization	cell junction	actin binding			NS(3)|biliary_tract(2)|breast(5)|cervix(3)|endometrium(16)|haematopoietic_and_lymphoid_tissue(2)|kidney(18)|large_intestine(51)|lung(160)|ovary(7)|pancreas(3)|prostate(11)|skin(14)|stomach(5)|upper_aerodigestive_tract(8)|urinary_tract(7)	315						TTGAATCAAACAATTTAATTA	0.338000													12	51					7.03913e-09	9.90461e-09	0.013537	1	0
CHRM2	1129	broad.mit.edu	37	7	136700551	136700551	+	Silent	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:136700551C>A	ENST00000445907.2	+	3	1467	c.939C>A	c.(937-939)ggC>ggA	p.G313G	AC009264.1_ENST00000597642.1_RNA|AC009264.1_ENST00000593789.1_RNA|AC009264.1_ENST00000592183.1_RNA|CHRM2_ENST00000402486.3_Silent_p.G313G|AC009264.1_ENST00000586239.1_RNA|CHRM2_ENST00000397608.3_Silent_p.G313G|CHRM2_ENST00000320658.5_Silent_p.G313G|CHRM2_ENST00000401861.1_Silent_p.G313G|AC009264.1_ENST00000439694.1_RNA|AC009264.1_ENST00000425981.2_RNA|CHRM2_ENST00000453373.1_Silent_p.G313G|AC009264.1_ENST00000598184.1_RNA	NM_001006627.1|NM_001006629.1	NP_001006628.1|NP_001006630.1	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	313					activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(13)|liver(1)|lung(29)|ovary(4)|pancreas(2)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)	68					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium chloride(DB01135)|Doxacurium(DB01334)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CTTCCCTGGGCCATTCCAAAG	0.463000													31	130					1.06801e-11	1.61728e-11	0.009535	1	0
LRP1B	53353	broad.mit.edu	37	2	141027873	141027873	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:141027873A>T	ENST00000389484.3	-	86	14156	c.13185T>A	c.(13183-13185)gaT>gaA	p.D4395E		NM_018557.2	NP_061027.2	Q9NZR2	LRP1B_HUMAN	low density lipoprotein receptor-related protein 1B	4395	EGF-like 14.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			NS(5)|autonomic_ganglia(1)|biliary_tract(1)|breast(3)|central_nervous_system(7)|endometrium(25)|haematopoietic_and_lymphoid_tissue(10)|kidney(27)|large_intestine(98)|liver(4)|lung(337)|ovary(15)|pancreas(6)|prostate(11)|skin(30)|stomach(2)|upper_aerodigestive_tract(19)|urinary_tract(5)	606		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AACAGTAGCCATCACATAACT	0.398000										TSP Lung(27;0.18)			12	56					0	0	0.010729	0	0
OBSCN	84033	broad.mit.edu	37	1	228466462	228466462	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:228466462G>T	ENST00000570156.2	+	31	8293	c.8219G>T	c.(8218-8220)tGt>tTt	p.C2740F	OBSCN_ENST00000359599.6_Missense_Mutation_p.C1158F|OBSCN_ENST00000366707.4_5'UTR|OBSCN_ENST00000366709.4_5'UTR|OBSCN_ENST00000284548.11_Missense_Mutation_p.C2311F|OBSCN_ENST00000422127.1_Missense_Mutation_p.C2311F	NM_001271223.2	NP_001258152.2	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	1741	Ig-like 27.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			NS(2)|breast(7)|central_nervous_system(5)|cervix(2)|endometrium(30)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(37)|lung(89)|ovary(8)|pancreas(3)|prostate(13)|skin(6)|stomach(11)|upper_aerodigestive_tract(2)|urinary_tract(3)	223		Prostate(94;0.0405)				GTGCTGGAGTGTCAGGTGTCC	0.672000													4	14					0.00909568	0.00977171	0.009096	1	0
ERP27	121506	broad.mit.edu	37	12	15073937	15073937	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:15073937T>C	ENST00000266397.2	-	4	952	c.379A>G	c.(379-381)Att>Gtt	p.I127V	ERP27_ENST00000540097.1_Missense_Mutation_p.I26V	NM_152321.2	NP_689534.1	Q96DN0	ERP27_HUMAN	endoplasmic reticulum protein 27	127	Thioredoxin.					endoplasmic reticulum lumen				breast(2)|cervix(2)|endometrium(2)|kidney(3)|large_intestine(4)|lung(3)|prostate(2)|skin(1)	19						GTGGCATCAATGCTTTCAATG	0.388000													25	85					0	0	0.027356	0	0
HYAL4	23553	broad.mit.edu	37	7	123517127	123517127	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:123517127G>T	ENST00000223026.4	+	5	2002	c.1364G>T	c.(1363-1365)tGc>tTc	p.C455F	HYAL4_ENST00000476325.1_Missense_Mutation_p.C455F	NM_012269.2	NP_036401.2	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	455					fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(8)|ovary(1)|skin(2)|upper_aerodigestive_tract(2)	23						GCTGATGGCTGCTCTGGGGTT	0.428000													7	78					0.00198382	0.00220578	0.001984	1	0
LBR	3930	broad.mit.edu	37	1	225594529	225594529	+	Silent	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:225594529C>A	ENST00000338179.2	-	11	1445	c.1320G>T	c.(1318-1320)gcG>gcT	p.A440A	LBR_ENST00000272163.4_Silent_p.A440A	NM_194442.2	NP_919424.1	Q14739	LBR_HUMAN	lamin B receptor	440					cholesterol biosynthetic process	integral to nuclear inner membrane	chromo shadow domain binding|delta14-sterol reductase activity|DNA binding|lamin binding|receptor activity			breast(1)|endometrium(2)|kidney(1)|large_intestine(5)|lung(5)|ovary(2)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	22	Breast(184;0.165)			GBM - Glioblastoma multiforme(131;0.117)		TCGTCAACAACGCTTCCTATA	0.413000													12	51					4.36969e-10	6.31619e-10	0.016723	1	0
SOBP	55084	broad.mit.edu	37	6	107955722	107955722	+	Silent	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:107955722C>T	ENST00000317357.5	+	6	2333	c.1674C>T	c.(1672-1674)aaC>aaT	p.N558N		NM_018013.3	NP_060483.3	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog (Drosophila)	558							metal ion binding			endometrium(1)|kidney(2)|large_intestine(4)|lung(15)|ovary(1)|prostate(1)|upper_aerodigestive_tract(2)	26		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		TCTCCAGCAACGGGGAGAACT	0.682000													3	8					0	0	0.004672	0	0
LRIG2	9860	broad.mit.edu	37	1	113658959	113658959	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:113658959A>G	ENST00000361127.4	+	16	2779	c.2581A>G	c.(2581-2583)Acg>Gcg	p.T861A	LRIG2_ENST00000492207.1_3'UTR	NM_014813.1	NP_055628.1	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like domains 2	861						cytoplasm|integral to membrane|plasma membrane				breast(1)|endometrium(2)|kidney(7)|large_intestine(3)|lung(10)|ovary(4)|prostate(2)|stomach(1)|urinary_tract(1)	31	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TTCCCAAGGAACGCTGTCTGA	0.488000													5	22					0	0	0.021553	0	0
DIP2C	22982	broad.mit.edu	37	10	468956	468956	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:468956C>A	ENST00000280886.6	-	5	499	c.412G>T	c.(412-414)Gaa>Taa	p.E138*	DIP2C_ENST00000381496.3_Nonsense_Mutation_p.E31*	NM_014974.2	NP_055789.1	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C (Drosophila)	138						nucleus	catalytic activity|transcription factor binding			breast(8)|endometrium(6)|kidney(10)|large_intestine(13)|lung(26)|ovary(3)|prostate(6)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(4)	81		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CCTTCATCTTCTGAGCCAGAA	0.537000													5	64					1.23904e-05	1.57606e-05	0.014758	1	0
PCDH9	5101	broad.mit.edu	37	13	66878809	66878809	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr13:66878809C>T	ENST00000544246.1	-	5	4383	c.3692G>A	c.(3691-3693)aGt>aAt	p.S1231N	PCDH9_ENST00000377865.2_Missense_Mutation_p.S1231N|PCDH9_ENST00000456367.1_Missense_Mutation_p.S1197N|PCDH9-AS1_ENST00000430861.1_RNA|PCDH9_ENST00000328454.5_Missense_Mutation_p.S1197N	NM_203487.2	NP_982354.1	Q9HC56	PCDH9_HUMAN	protocadherin 9	1231					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(2)|central_nervous_system(3)|cervix(2)|endometrium(7)|kidney(4)|large_intestine(33)|lung(30)|ovary(5)|pancreas(2)|prostate(1)|skin(4)|stomach(2)|upper_aerodigestive_tract(5)|urinary_tract(3)	103		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		CTCCTTAGGACTCTCAGTAGC	0.423000													4	88					0	0	0.014758	0	0
ZNF287	57336	broad.mit.edu	37	17	16456596	16456596	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:16456596A>C	ENST00000395824.1	-	6	1477	c.860T>G	c.(859-861)aTt>aGt	p.I287S	ZNF287_ENST00000395825.3_Missense_Mutation_p.I287S			Q9HBT7	ZN287_HUMAN	zinc finger protein 287	280					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|endometrium(3)|kidney(2)|large_intestine(7)|lung(5)|prostate(1)|urinary_tract(1)	20				UCEC - Uterine corpus endometrioid carcinoma (92;0.083)		ATCAGTGTGAATTTTCCAGAA	0.348000													16	85					0	0	0.004990	0	0
BLZF1	8548	broad.mit.edu	37	1	169338766	169338766	+	Silent	SNP	T	T	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:169338766T>C	ENST00000367808.3	+	2	429	c.6T>C	c.(4-6)acT>acC	p.T2T	BLZF1_ENST00000367807.3_Silent_p.T2T|BLZF1_ENST00000329281.2_Silent_p.T2T			Q9H2G9	GO45_HUMAN	basic leucine zipper nuclear factor 1	2					cell proliferation|Golgi organization|Golgi to plasma membrane protein transport|regulation of cell growth|regulation of transcription from RNA polymerase II promoter	Golgi lumen|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|ubiquitin protein ligase binding			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(4)|prostate(1)|skin(1)	14	all_hematologic(923;0.208)					AAAAAATGACTACTAAAAATT	0.294000													20	38					0	0	0.008871	0	0
TATDN1	83940	broad.mit.edu	37	8	125551265	125551265	+	Splice_Site	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:125551265C>A	ENST00000276692.6	-	1	60		c.e1+1		TATDN1_ENST00000519548.1_Splice_Site|TATDN1_ENST00000517678.1_5'UTR|TATDN1_ENST00000605953.1_Splice_Site	NM_032026.3	NP_114415.1	Q6P1N9	TATD1_HUMAN	TatD DNase domain containing 1							nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			endometrium(1)|kidney(2)|large_intestine(3)|lung(6)|prostate(2)|upper_aerodigestive_tract(1)	15	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			GCTCCTCTTACCGATAAACTT	0.622000													4	67					5.9392e-07	8.07122e-07	0.021553	1	0
TTN	7273	broad.mit.edu	37	2	179458092	179458092	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:179458092G>T	ENST00000589042.1	-	299	59067	c.58843C>A	c.(58843-58845)Ctg>Atg	p.L19615M	TTN-AS1_ENST00000592750.1_RNA|TTN-AS1_ENST00000592630.1_RNA|TTN-AS1_ENST00000592689.1_RNA|TTN-AS1_ENST00000591332.1_RNA|TTN_ENST00000591111.1_Missense_Mutation_p.L17974M|TTN-AS1_ENST00000590932.1_RNA|TTN-AS1_ENST00000590807.1_RNA|TTN-AS1_ENST00000419746.1_RNA|TTN-AS1_ENST00000586452.1_RNA|TTN-AS1_ENST00000585451.1_RNA|TTN_ENST00000460472.2_Missense_Mutation_p.L10550M|TTN-AS1_ENST00000589907.1_RNA|TTN-AS1_ENST00000456053.1_RNA|TTN_ENST00000359218.5_Missense_Mutation_p.L10675M|TTN_ENST00000342992.6_Missense_Mutation_p.L17047M|TTN_ENST00000342175.6_Missense_Mutation_p.L10742M|TTN-AS1_ENST00000589234.1_RNA	NM_001267550.1	NP_001254479.1	Q8WZ42	TITIN_HUMAN	titin	17974	Ig-like 109.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			NS(24)|autonomic_ganglia(1)|breast(64)|central_nervous_system(14)|cervix(14)|endometrium(96)|haematopoietic_and_lymphoid_tissue(16)|kidney(91)|large_intestine(303)|liver(1)|lung(595)|ovary(58)|pancreas(17)|prostate(38)|skin(60)|stomach(29)|upper_aerodigestive_tract(1)|urinary_tract(26)	1448			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCTTTTCCAGGATGTAGTTT	0.403000													5	90					1.23904e-05	1.57606e-05	0.014758	1	0
EGR1	1958	broad.mit.edu	37	5	137802964	137802964	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:137802964G>A	ENST00000239938.4	+	2	1098	c.826G>A	c.(826-828)Ggc>Agc	p.G276S		NM_001964.2	NP_001955.1	P18146	EGR1_HUMAN	early growth response 1	276					cellular response to heparin|cellular response to mycophenolic acid|glomerular mesangial cell proliferation|interleukin-1-mediated signaling pathway|positive regulation of glomerular metanephric mesangial cell proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of protein sumoylation|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytoplasm|nucleus	histone acetyltransferase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|ovary(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GCCCTTCCAGGGCCTGGAGAG	0.622000													7	46					0	0	0.001984	0	0
TRBV7-7	28591	broad.mit.edu	37	7	142120044	142120044	+	RNA	SNP	C	C	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:142120044C>G	ENST00000390377.1	-	0	122																											TTGGATCACACCTGAGAGTTA	0.488000													5	84					0	0	0.001984	0	0
DDI1	414301	broad.mit.edu	37	11	103908003	103908003	+	Silent	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:103908003C>A	ENST00000302259.3	+	1	696	c.453C>A	c.(451-453)ctC>ctA	p.L151L	PDGFD_ENST00000302251.5_Intron|PDGFD_ENST00000393158.2_Intron	NM_001001711.2	NP_001001711.1	Q8WTU0	DDI1_HUMAN	DNA-damage inducible 1 homolog 1 (S. cerevisiae)	151					proteolysis		aspartic-type endopeptidase activity			central_nervous_system(1)|endometrium(4)|kidney(4)|large_intestine(12)|liver(2)|lung(21)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	52		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		GCATGCTGCTCTCCAACCCCC	0.652000													9	60					0.000274275	0.000318319	0.004482	1	0
KANSL1	284058	broad.mit.edu	37	17	44109534	44109534	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:44109534C>A	ENST00000262419.6	-	14	3439	c.2969G>T	c.(2968-2970)aGg>aTg	p.R990M	KANSL1_ENST00000572904.1_Missense_Mutation_p.R990M|KANSL1_ENST00000432791.1_Missense_Mutation_p.R990M|KANSL1_ENST00000575318.1_Missense_Mutation_p.R926M|KANSL1_ENST00000574590.1_Missense_Mutation_p.R990M|KANSL1_ENST00000393476.3_Missense_Mutation_p.R284M	NM_001193466.1	NP_001180395.1	Q7Z3B3	K1267_HUMAN	KAT8 regulatory NSL complex subunit 1	990						MLL1 complex	protein binding										AATGGGGCTCCTAGGGGACTG	0.622000													13	56					2.61681e-11	3.92522e-11	0.020292	1	0
PCDHGB2	56103	broad.mit.edu	37	5	140739886	140739886	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:140739886C>T	ENST00000522605.1	+	1	184	c.184C>T	c.(184-186)Cca>Tca	p.P62S	PCDHGA4_ENST00000571252.1_Intron|PCDHGA1_ENST00000517417.1_Intron|PCDHGA3_ENST00000253812.6_Intron|PCDHGB1_ENST00000523390.1_Intron|PCDHGA2_ENST00000394576.2_Intron	NM_018923.2|NM_032096.1	NP_061746.1|NP_115267.1												p.P62S(1)		endometrium(1)|kidney(1)|large_intestine(5)|lung(3)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)	14			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCGGGACTTGCCAGCCCGGAA	0.537000													4	94					0	0	0.009096	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474884	140474884	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:140474884A>C	ENST00000194155.4	+	1	658	c.510A>C	c.(508-510)caA>caC	p.Q170H		NM_018936.2	NP_061759.1	Q9Y5E7	PCDB2_HUMAN		170	Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			NS(1)|breast(1)|endometrium(3)|kidney(1)|large_intestine(22)|lung(24)|ovary(3)|pancreas(1)|prostate(3)|skin(7)|upper_aerodigestive_tract(3)|urinary_tract(2)	71			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAGTCTCCAAAATTACACAA	0.398000													8	39					0	0	0.006214	0	0
HMCN1	83872	broad.mit.edu	37	1	185976334	185976334	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:185976334G>T	ENST00000271588.4	+	30	4779	c.4550G>T	c.(4549-4551)aGa>aTa	p.R1517I	HMCN1_ENST00000367492.2_Missense_Mutation_p.R1517I	NM_031935.2	NP_114141.2	Q96RW7	HMCN1_HUMAN	hemicentin 1	1517	Ig-like C2-type 12.				response to stimulus|visual perception	basement membrane	calcium ion binding			NS(2)|autonomic_ganglia(1)|breast(10)|central_nervous_system(2)|cervix(1)|endometrium(28)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(58)|liver(3)|lung(101)|ovary(23)|pancreas(4)|prostate(20)|skin(8)|stomach(1)|upper_aerodigestive_tract(11)|urinary_tract(18)	308						AATGCACGGAGAAATGACAAG	0.378000													8	64					1.12685e-05	1.4686e-05	0.004482	1	0
MXRA5	25878	broad.mit.edu	37	X	3228090	3228090	+	Silent	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chrX:3228090G>T	ENST00000217939.6	-	7	8308	c.8154C>A	c.(8152-8154)ggC>ggA	p.G2718G		NM_015419.3	NP_056234.2	Q9NR99	MXRA5_HUMAN	matrix-remodelling associated 5	2718	Ig-like C2-type 11.					extracellular region				NS(1)|biliary_tract(1)|breast(4)|central_nervous_system(3)|cervix(2)|endometrium(8)|kidney(2)|large_intestine(32)|lung(81)|ovary(6)|prostate(3)|skin(9)|stomach(3)|urinary_tract(2)	157		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TGACCGAAGGGCCGTACTCCG	0.612000													8	28					0.000157383	0.000185363	0.003080	1	0
GRIK4	2900	broad.mit.edu	37	11	120673557	120673557	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:120673557G>T	ENST00000527524.2	+	4	525	c.238G>T	c.(238-240)Gca>Tca	p.A80S	GRIK4_ENST00000438375.2_Missense_Mutation_p.A80S			Q16099	GRIK4_HUMAN	glutamate receptor, ionotropic, kainate 4	80					glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(20)|liver(1)|lung(29)|ovary(2)|pancreas(1)|prostate(4)|skin(2)|urinary_tract(1)	69		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	GTACGAGACTGCAGAAACCAG	0.582000											OREG0021427	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	79					8.12818e-05	9.86551e-05	0.001984	1	0
BSN	8927	broad.mit.edu	37	3	49689125	49689125	+	Silent	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:49689125G>T	ENST00000296452.4	+	5	2250	c.2136G>T	c.(2134-2136)ggG>ggT	p.G712G		NM_003458.3	NP_003449.2	Q9UPA5	BSN_HUMAN	bassoon presynaptic cytomatrix protein	712					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			breast(8)|central_nervous_system(2)|cervix(2)|endometrium(16)|kidney(3)|large_intestine(17)|lung(37)|ovary(7)|pancreas(1)|prostate(4)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	106				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		ACAGTGCAGGGGTGACAGGGC	0.632000													15	36					0.000308642	0.000355609	0.024245	1	0
RASD2	23551	broad.mit.edu	37	22	35947786	35947786	+	Nonsense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr22:35947786G>T	ENST00000216127.4	+	3	1150	c.508G>T	c.(508-510)Gag>Tag	p.E170*		NM_014310.3	NP_055125.2	Q96D21	RHES_HUMAN	RASD family, member 2	170					locomotory behavior|positive regulation of protein kinase B signaling cascade|positive regulation of protein sumoylation|regulation of cAMP-mediated signaling	intracellular|plasma membrane	G-protein beta-subunit binding|GTP binding|GTPase activity			endometrium(2)|large_intestine(1)|lung(8)|prostate(1)|skin(1)	13						CGCCTACTTCGAGGTGTCGGC	0.622000													10	24					0.00829132	0.00896816	0.008291	1	0
MT-ND4	4538	broad.mit.edu	37	MT	11211	11211	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chrM:11211T>C	ENST00000361381.2	+	1	452	c.452T>C	c.(451-453)tTc>tCc	p.151_151insS						mitochondrially encoded NADH dehydrogenase 4											breast(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|prostate(1)	13						ATACTTCCTATTCTACACCCT	0.478000													4	278					0	0	0.021553	0	0
RGS6	9628	broad.mit.edu	37	14	72932467	72932467	+	Splice_Site	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr14:72932467C>A	ENST00000553530.1	+	7	603	c.394_splice	c.e7-1	p.A132_splice	RGS6_ENST00000407322.4_Splice_Site_p.A132_splice|RGS6_ENST00000554782.1_5'UTR|RGS6_ENST00000343854.6_Splice_Site_p.A132_splice|RGS6_ENST00000402788.2_Splice_Site_p.A132_splice|RGS6_ENST00000434263.2_Splice_Site_p.A63_splice|RGS6_ENST00000355512.6_Splice_Site_p.A132_splice|RGS6_ENST00000404301.2_Splice_Site_p.A132_splice|RGS6_ENST00000555571.1_Splice_Site_p.A132_splice|RGS6_ENST00000556437.1_Splice_Site_p.A132_splice|RGS6_ENST00000406236.4_Splice_Site_p.A132_splice|RGS6_ENST00000553690.1_3'UTR|RGS6_ENST00000553525.1_Splice_Site_p.A132_splice	NM_001204417.1|NM_001204418.1|NM_001204420.1|NM_001204421.1|NM_001204422.1|NM_004296.5	NP_001191346.1|NP_001191347.1|NP_001191349.1|NP_001191350.1|NP_001191351.1|NP_004287.3	P49758	RGS6_HUMAN	regulator of G-protein signaling 6	132					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			endometrium(2)|kidney(3)|large_intestine(6)|lung(14)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	33				all cancers(60;0.00309)|BRCA - Breast invasive adenocarcinoma(234;0.0281)|STAD - Stomach adenocarcinoma(64;0.0302)|OV - Ovarian serous cystadenocarcinoma(108;0.0476)		TTCCCTCAGCCATCTATCTCT	0.403000													11	80					6.40141e-05	7.82942e-05	0.010729	1	0
ANKRD26	22852	broad.mit.edu	37	10	27322179	27322179	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:27322179T>A	ENST00000376087.4	-	25	3947	c.3782A>T	c.(3781-3783)aAg>aTg	p.K1261M	ANKRD26_ENST00000376070.3_Missense_Mutation_p.K818M|ANKRD26_ENST00000436985.2_Missense_Mutation_p.K1277M	NM_001256053.1|NM_014915.2	NP_001242982.1|NP_055730.2	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	1260						centrosome				breast(4)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(14)|lung(30)|ovary(1)|pancreas(1)|prostate(3)|skin(2)|urinary_tract(2)	70						ACCTAATTTCTTCTTTAAATC	0.299000													4	52					0	0	0.009096	0	0
PNLIPRP3	119548	broad.mit.edu	37	10	118236232	118236232	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:118236232C>A	ENST00000369230.3	+	11	1387	c.1241C>A	c.(1240-1242)aCa>aAa	p.T414K		NM_001011709.2	NP_001011709.2	Q17RR3	LIPR3_HUMAN	pancreatic lipase-related protein 3	414	PLAT.				lipid catabolic process	extracellular region	triglyceride lipase activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(1)|large_intestine(9)|lung(29)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	50				all cancers(201;0.0131)		GGAAACATTACAAGTGTTCAG	0.343000													25	109					1.17739e-12	1.81753e-12	0.027356	1	0
ITGB1	3688	broad.mit.edu	37	10	33190513	33190513	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:33190513C>G	ENST00000396033.2	-	16	2517	c.2382G>C	c.(2380-2382)aaG>aaC	p.K794N	ITGB1_ENST00000423113.1_3'UTR|ITGB1_ENST00000374956.4_3'UTR|ITGB1_ENST00000302278.3_Missense_Mutation_p.K794N	NM_133376.2	NP_596867.1	P05556	ITB1_HUMAN	integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)	794					axon guidance|blood coagulation|cell-cell adhesion mediated by integrin|cell-matrix adhesion|cellular defense response|homophilic cell adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|leukocyte migration|positive regulation of apoptosis|regulation of immune response	cell surface|cleavage furrow|focal adhesion|melanosome|neuromuscular junction|ruffle|sarcolemma	identical protein binding|protein heterodimerization activity|receptor activity			autonomic_ganglia(1)|breast(2)|endometrium(5)|kidney(2)|large_intestine(8)|lung(11)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	37		Ovarian(717;1.34e-05)|Breast(68;0.0634)				TTCCCTCATACTTCGGATTGA	0.378000													11	67					0	0	0.010729	0	0
RECK	8434	broad.mit.edu	37	9	36087705	36087705	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr9:36087705G>A	ENST00000377966.3	+	9	1218	c.652G>A	c.(652-654)Gac>Aac	p.D218N		NM_021111.2	NP_066934.1	O95980	RECK_HUMAN	reversion-inducing-cysteine-rich protein with kazal motifs	218	5 X Knot repeats.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			cervix(1)|endometrium(7)|kidney(3)|large_intestine(6)|lung(10)|ovary(1)|pancreas(1)|skin(2)|stomach(1)	32			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			ATATTGCTGTGACAGAGCTGA	0.373000													8	71					0	0	0.003080	0	0
SRRT	51593	broad.mit.edu	37	7	100479340	100479340	+	Silent	SNP	T	T	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:100479340T>G	ENST00000388793.4	+	4	532	c.312T>G	c.(310-312)ggT>ggG	p.G104G	SRRT_ENST00000457580.2_Silent_p.G104G|SRRT_ENST00000432932.1_Silent_p.G104G|SRRT_ENST00000347433.4_Silent_p.G104G	NM_001128852.1|NM_015908.5	NP_001122324.1|NP_056992.4	Q9BXP5	SRRT_HUMAN	serrate RNA effector molecule homolog (Arabidopsis)	104					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding	p.G104G(1)		breast(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(12)|lung(5)|ovary(3)|prostate(2)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	40						CTGGGGGGGGTGGGGGCCCAA	0.607000													6	50					0	0	0.013537	0	0
SYT13	57586	broad.mit.edu	37	11	45265822	45265822	+	Silent	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:45265822G>T	ENST00000020926.3	-	6	1173	c.1062C>A	c.(1060-1062)ccC>ccA	p.P354P		NM_001247987.1|NM_020826.2	NP_001234916.1|NP_065877.1	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	354	C2 2.					transport vesicle				breast(1)|large_intestine(3)|lung(16)|ovary(1)|skin(2)	23						CGTTCCACACGGGGTTGATCT	0.562000													6	39					0.00198382	0.00220578	0.001984	1	0
CLPS	1208	broad.mit.edu	37	6	35763532	35763532	+	Silent	SNP	G	G	A	rs144552522		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:35763532G>A	ENST00000259938.2	-	2	205	c.183C>T	c.(181-183)agC>agT	p.S61S		NM_001832.3	NP_001823.1	P04118	COL_HUMAN	colipase, pancreatic	61					lipid catabolic process|lipid digestion|retinoid metabolic process|steroid metabolic process	extracellular region				large_intestine(2)|lung(2)|prostate(1)	5						CGCTGTTCTCGCTGGCCATGG	0.597000													7	93					0	0	0.001984	0	0
ZNF687	57592	broad.mit.edu	37	1	151260766	151260766	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:151260766A>T	ENST00000368879.2	+	2	2097	c.1999A>T	c.(1999-2001)Acc>Tcc	p.T667S		NM_020832.1	NP_065883.1	Q8N1G0	ZN687_HUMAN	zinc finger protein 687	667					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|zinc ion binding			breast(2)|central_nervous_system(3)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(11)|ovary(1)|upper_aerodigestive_tract(2)	32	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TGCCCCGGCCACCTCTGCTTA	0.657000													6	19					0	0	0.008291	0	0
HGSNAT	138050	broad.mit.edu	37	8	43033258	43033258	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:43033258C>T	ENST00000458501.2	+	10	977	c.977C>T	c.(976-978)aCt>aTt	p.T326I	HGSNAT_ENST00000379644.4_Missense_Mutation_p.T298I			Q68CP4	HGNAT_HUMAN	heparan-alpha-glucosaminide N-acetyltransferase	326					lysosomal transport|protein oligomerization	integral to membrane|lysosomal membrane	heparan-alpha-glucosaminide N-acetyltransferase activity			cervix(1)|endometrium(2)|large_intestine(4)|lung(6)	13	Prostate(17;0.0119)|Ovarian(28;0.0172)|Lung SC(25;0.184)	all_cancers(86;0.000223)|all_epithelial(80;1.61e-07)|all_lung(54;0.00021)|Lung NSC(58;0.000778)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.129)	Lung(22;0.0777)|LUSC - Lung squamous cell carcinoma(45;0.17)			CTATCGATGACTTCTATACTG	0.353000													15	85					0	0	0.024245	0	0
LINC01410	103352539	broad.mit.edu	37	9	66466226	66466226	+	RNA	SNP	A	A	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr9:66466226A>G	ENST00000424345.1	+	0	859																											cctagcggagagagagccgga	0.453000													3	28					0	0	0.009096	0	0
TMPRSS2	7113	broad.mit.edu	37	21	42866376	42866376	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr21:42866376C>T	ENST00000398585.3	-	3	316	c.256G>A	c.(256-258)Gtg>Atg	p.V86M	TMPRSS2_ENST00000497881.1_Intron|TMPRSS2_ENST00000458356.1_Missense_Mutation_p.V49M|TMPRSS2_ENST00000332149.5_Missense_Mutation_p.V49M	NM_001135099.1	NP_001128571.1	O15393	TMPS2_HUMAN	transmembrane protease, serine 2	49					proteolysis	cytoplasm|extracellular region|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity		TMPRSS2/ETV1(34)|TMPRSS2/ETV5_ENST00000306376(5)|TMPRSS2/ERG(3582)|TMPRSS2/ETV4(13)	central_nervous_system(1)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	4		Prostate(19;4.48e-07)|all_epithelial(19;0.031)				TACTGGGGCACGGGGGACGGG	0.617000			T	"""ERG, ETV1, ETV4, ETV5"""	prostate								12	66					0	0	0.016723	0	0
USH2A	7399	broad.mit.edu	37	1	215914876	215914876	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:215914876C>A	ENST00000366943.2	-	60	11938	c.11552G>T	c.(11551-11553)aGt>aTt	p.S3851I	USH2A_ENST00000307340.3_Missense_Mutation_p.S3851I			O75445	USH2A_HUMAN	Usher syndrome 2A (autosomal recessive, mild)	3851	Fibronectin type-III 23.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			NS(7)|breast(20)|central_nervous_system(3)|cervix(2)|endometrium(32)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(71)|liver(2)|lung(282)|ovary(25)|pancreas(2)|prostate(12)|skin(22)|stomach(7)|upper_aerodigestive_tract(20)|urinary_tract(3)	527				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AACTCCACAACTTCCTTGAAA	0.353000										HNSCC(13;0.011)			12	62					6.40141e-05	7.82942e-05	0.010729	1	0
LRP5	4041	broad.mit.edu	37	11	68115425	68115425	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:68115425G>T	ENST00000294304.7	+	2	308	c.202G>T	c.(202-204)Gtg>Ttg	p.V68L		NM_002335.2	NP_002326.2	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein 5	68	Beta-propeller 1.				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			autonomic_ganglia(1)|breast(3)|cervix(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(9)|lung(24)|ovary(5)|pancreas(1)|prostate(1)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(1)	63						TGCGGCCGCAGTGGACTTCCA	0.642000													9	44					0.000442599	0.000506283	0.006214	1	0
OAS2	4939	broad.mit.edu	37	12	113447043	113447043	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:113447043C>T	ENST00000392583.2	+	10	2254	c.2047C>T	c.(2047-2049)Ccg>Tcg	p.P683S	OAS2_ENST00000342315.4_Missense_Mutation_p.P683S|RP1-71H24.1_ENST00000552784.1_RNA	NM_002535.2	NP_002526.2	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2, 69/71kDa	683	OAS domain 2.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			NS(1)|breast(2)|endometrium(4)|large_intestine(7)|lung(8)|ovary(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)	28						TTGGAAAGTGCCGGTAAAAGT	0.458000													5	309					0	0	0.021553	0	0
TEX13A	56157	broad.mit.edu	37	X	104463663	104463663	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chrX:104463663G>C	ENST00000413579.1	-	5	1324	c.1213C>G	c.(1213-1215)Ctg>Gtg	p.L405V	TEX13A_ENST00000372575.1_3'UTR|IL1RAPL2_ENST00000372582.1_Intron|TEX13A_ENST00000372578.3_3'UTR|IL1RAPL2_ENST00000344799.4_Intron			Q9BXU3	TX13A_HUMAN	testis expressed 13A	405						intracellular	zinc ion binding			large_intestine(5)|ovary(2)|upper_aerodigestive_tract(1)	8						GGTTTTTGCAGCCAGATTCCC	0.502000													6	213					0	0	0.004482	0	0
ALOXE3	59344	broad.mit.edu	37	17	8011889	8011889	+	Silent	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:8011889C>A	ENST00000380149.1	-	12	2079	c.2049G>T	c.(2047-2049)gtG>gtT	p.V683V	ALOXE3_ENST00000318227.3_Silent_p.V659V|ALOXE3_ENST00000448843.2_Silent_p.V527V			Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3	527	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			breast(4)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(7)|lung(7)|ovary(2)|pancreas(1)|prostate(1)|skin(4)	31						AATAGTAGCCCACGATTTCTG	0.577000													12	92					0.00136819	0.00154286	0.013537	1	0
IRX2	153572	broad.mit.edu	37	5	2748735	2748735	+	Missense_Mutation	SNP	T	T	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:2748735T>G	ENST00000382611.6	-	3	1335	c.1087A>C	c.(1087-1089)Acc>Ccc	p.T363P	IRX2_ENST00000302057.5_Missense_Mutation_p.T363P	NM_001134222.1	NP_001127694.1	Q9BZI1	IRX2_HUMAN	iroquois homeobox 2	363						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(3)|endometrium(4)|kidney(1)|large_intestine(2)|lung(12)|prostate(1)|skin(2)	26				GBM - Glioblastoma multiforme(108;0.204)		GGTGCCCCGGTTGAggccggc	0.741000													4	6					0	0	0.009096	0	0
GOPC	57120	broad.mit.edu	37	6	117884489	117884489	+	Silent	SNP	A	A	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:117884489A>G	ENST00000535237.1	-	9	1546	c.1317T>C	c.(1315-1317)agT>agC	p.S439S	GOPC_ENST00000467125.1_Intron|GOPC_ENST00000368498.2_Silent_p.S439S|DCBLD1_ENST00000296955.8_Intron|GOPC_ENST00000052569.6_Silent_p.S431S					golgi-associated PDZ and coiled-coil motif containing										GOPC/ROS1(14)	endometrium(1)|large_intestine(3)|lung(4)|ovary(1)	9		all_cancers(87;0.00844)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0363)|OV - Ovarian serous cystadenocarcinoma(136;0.0821)|all cancers(137;0.0976)		GCGGAGTTTCACTTGCAGTGC	0.368000			O	ROS1	glioblastoma								7	43					0	0	0.001984	0	0
FAT4	79633	broad.mit.edu	37	4	126411871	126411871	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:126411871G>T	ENST00000394329.3	+	17	13907	c.13894G>T	c.(13894-13896)Gat>Tat	p.D4632Y	FAT4_ENST00000335110.5_Missense_Mutation_p.D2873Y	NM_024582.4	NP_078858.4	Q6V0I7	FAT4_HUMAN	FAT atypical cadherin 4	4632					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(6)|autonomic_ganglia(1)|breast(4)|central_nervous_system(3)|cervix(3)|endometrium(27)|haematopoietic_and_lymphoid_tissue(3)|kidney(10)|large_intestine(93)|liver(3)|lung(120)|ovary(9)|pancreas(2)|prostate(21)|skin(31)|stomach(1)|upper_aerodigestive_tract(12)|urinary_tract(6)	355						CGCCCCTTCGGATGCAGACAT	0.527000													19	61					2.94398e-08	4.07038e-08	0.007413	1	0
CEP164	22897	broad.mit.edu	37	11	117241905	117241905	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:117241905G>A	ENST00000278935.3	+	9	1022	c.875G>A	c.(874-876)aGt>aAt	p.S292N	CEP164_ENST00000533706.1_3'UTR	NM_014956.4	NP_055771.4	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	292					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				breast(3)|central_nervous_system(1)|kidney(7)|large_intestine(12)|lung(18)|ovary(3)|prostate(3)	47	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		GCAGACAGCAGTCTGAGCAGT	0.537000													6	116					0	0	0.021553	0	0
LPHN2	23266	broad.mit.edu	37	1	82452669	82452669	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:82452669C>T	ENST00000370728.1	+	24	4226	c.3581C>T	c.(3580-3582)aCa>aTa	p.T1194I	LPHN2_ENST00000370721.1_Missense_Mutation_p.T1119I|LPHN2_ENST00000370713.1_Intron|LPHN2_ENST00000370715.1_Intron|LPHN2_ENST00000370723.1_Missense_Mutation_p.T1196I|LPHN2_ENST00000370717.2_Missense_Mutation_p.T1209I|LPHN2_ENST00000359929.3_Intron|LPHN2_ENST00000335786.5_Intron|LPHN2_ENST00000370725.1_Missense_Mutation_p.T1209I|LPHN2_ENST00000271029.4_Intron|LPHN2_ENST00000370727.1_Intron|LPHN2_ENST00000394879.1_Missense_Mutation_p.T1196I|LPHN2_ENST00000469377.2_Intron|LPHN2_ENST00000319517.6_Intron|LPHN2_ENST00000370730.1_Intron			O95490	LPHN2_HUMAN	latrophilin 2	1194					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			NS(3)|breast(6)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(18)|liver(2)|lung(37)|ovary(3)|pancreas(1)|prostate(3)|skin(22)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(5)	119				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CTCGCTGAAACAGTTGTATGT	0.398000													6	70					0	0	0.021553	0	0
MYH1	4619	broad.mit.edu	37	17	10403943	10403943	+	Splice_Site	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:10403943C>T	ENST00000226207.5	-	28	3959	c.3865_splice	c.e28+1	p.G1289_splice	CTC-297N7.7_ENST00000399342.2_RNA|CTC-297N7.7_ENST00000587182.1_RNA|CTC-297N7.7_ENST00000581304.1_RNA	NM_005963.3	NP_005954.3	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1289				TESG -> QNQV (in Ref. 4; CAA27380).		muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			NS(7)|breast(4)|central_nervous_system(1)|endometrium(16)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(22)|lung(78)|ovary(11)|pancreas(1)|prostate(3)|skin(13)|upper_aerodigestive_tract(4)|urinary_tract(5)	176						CATGGCCCACCTGATTCTGTT	0.453000													15	56					0	0	0.004990	0	0
SYNE1	23345	broad.mit.edu	37	6	152792777	152792777	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:152792777C>A	ENST00000367255.5	-	16	2188	c.1587G>T	c.(1585-1587)aaG>aaT	p.K529N	SYNE1_ENST00000367253.4_Missense_Mutation_p.K529N|SYNE1_ENST00000341594.5_Missense_Mutation_p.K536N|SYNE1_ENST00000367248.3_Missense_Mutation_p.K519N|SYNE1_ENST00000466159.2_Missense_Mutation_p.K529N|SYNE1_ENST00000265368.4_Missense_Mutation_p.K529N|SYNE1_ENST00000495090.2_Missense_Mutation_p.K96N|SYNE1_ENST00000413186.2_Missense_Mutation_p.K529N|SYNE1_ENST00000423061.1_Missense_Mutation_p.K536N|SYNE1_ENST00000448038.1_Missense_Mutation_p.K536N	NM_182961.3	NP_892006.3	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	529					cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			NS(3)|biliary_tract(1)|breast(17)|central_nervous_system(21)|cervix(3)|endometrium(27)|haematopoietic_and_lymphoid_tissue(4)|kidney(16)|large_intestine(138)|liver(1)|lung(190)|ovary(11)|pancreas(5)|prostate(12)|skin(20)|stomach(3)|upper_aerodigestive_tract(33)|urinary_tract(19)	524		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCCTCCCGTACTTAATGATCC	0.448000										HNSCC(10;0.0054)			24	128					5.35356e-11	7.88163e-11	0.016522	1	0
DCLK3	85443	broad.mit.edu	37	3	36779132	36779132	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:36779132C>T	ENST00000416516.2	-	2	1509	c.1019G>A	c.(1018-1020)cGg>cAg	p.R340Q		NM_033403.1	NP_208382.1	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	340						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			breast(3)|endometrium(3)|kidney(2)|large_intestine(11)|lung(20)|ovary(2)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(2)	48						CCGTGGCTTCCGACCGCTGGG	0.567000													10	135					0	0	0.006214	0	0
GABRA5	2558	broad.mit.edu	37	15	27185073	27185073	+	Splice_Site	SNP	C	C	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:27185073C>G	ENST00000335625.5	+	9	1614	c.724_splice	c.e9-1	p.G242_splice	GABRA5_ENST00000355395.5_Splice_Site_p.G242_splice|GABRA5_ENST00000400081.3_Splice_Site_p.G242_splice	NM_000810.3	NP_000801.1	P31644	GBRA5_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha 5	242					gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			NS(1)|breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(11)|lung(26)|ovary(1)|upper_aerodigestive_tract(1)	49		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TATTTGCAGGCGAATACACAA	0.493000													8	62					0	0	0.004482	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72434397	72434397	+	Silent	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:72434397G>T	ENST00000373208.1	+	2	168	c.168G>T	c.(166-168)gtG>gtT	p.V56V	ADAMTS14_ENST00000373207.1_Silent_p.V56V	NM_139155.2	NP_631894.2	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1 motif, 14	56					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			NS(1)|autonomic_ganglia(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(11)|lung(15)|ovary(7)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	50						TCTCCCACGTGGTGTCTGGCC	0.612000													5	24					5.18039e-06	6.86402e-06	0.003080	1	0
COL22A1	169044	broad.mit.edu	37	8	139715564	139715564	+	Silent	SNP	G	G	C	rs147410805		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:139715564G>C	ENST00000303045.6	-	31	2990	c.2544C>G	c.(2542-2544)ccC>ccG	p.P848P	COL22A1_ENST00000435777.1_Silent_p.P848P|COL22A1_ENST00000341807.4_5'UTR	NM_152888.1	NP_690848.1	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	848	Gly-rich.|Pro-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			breast(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(14)|large_intestine(29)|lung(107)|ovary(13)|pancreas(1)|prostate(3)|skin(12)|upper_aerodigestive_tract(15)|urinary_tract(4)	211	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CAGGTAACCCGGGAGGGCCTG	0.478000										HNSCC(7;0.00092)			6	49					0	0	0.001984	0	0
LOC344967	344967	broad.mit.edu	37	4	40045230	40045230	+	RNA	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:40045230C>A	ENST00000381811.2	-	0	919					NR_027277.1																						TGACAGTGTTCGGCTCTGGGT	0.587000													8	30					5.4927e-09	7.79768e-09	0.004482	1	0
RPS6KL1	83694	broad.mit.edu	37	14	75386663	75386663	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr14:75386663T>A	ENST00000555647.1	-	4	562	c.275A>T	c.(274-276)aAc>aTc	p.N92I	RPS6KL1_ENST00000554900.1_5'UTR|RPS6KL1_ENST00000557413.1_Missense_Mutation_p.N92I|RPS6KL1_ENST00000358328.4_Missense_Mutation_p.N92I|RPS6KL1_ENST00000354625.2_Missense_Mutation_p.N92I			Q9Y6S9	RPKL1_HUMAN	ribosomal protein S6 kinase-like 1	92	MIT.					ribosome	ATP binding|protein serine/threonine kinase activity			central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(3)|liver(1)|lung(4)|ovary(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	17				BRCA - Breast invasive adenocarcinoma(234;0.00658)		TCGCTCCTTGTTGGGGTCAAC	0.607000													3	25					0	0	0.014758	0	0
WDFY3	23001	broad.mit.edu	37	4	85752722	85752722	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:85752722C>A	ENST00000322366.6	-	8	1020	c.613G>T	c.(613-615)Gag>Tag	p.E205*	WDFY3_ENST00000295888.4_Nonsense_Mutation_p.E205*			Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3	205						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			breast(5)|central_nervous_system(5)|endometrium(15)|haematopoietic_and_lymphoid_tissue(3)|kidney(8)|large_intestine(32)|lung(50)|ovary(3)|prostate(5)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(2)	134		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		GCCAGCTCCTCCGCAGGGGAA	0.388000													13	65					3.03607e-14	4.7327e-14	0.013537	1	0
SP3	6670	broad.mit.edu	37	2	174783494	174783494	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:174783494T>A	ENST00000310015.6	-	5	2189	c.1659A>T	c.(1657-1659)gaA>gaT	p.E553D	SP3_ENST00000455789.2_Missense_Mutation_p.E500D|SP3_ENST00000418194.2_Missense_Mutation_p.E485D	NM_001172712.1|NM_003111.4	NP_001166183.1|NP_003102.1	Q02447	SP3_HUMAN	Sp3 transcription factor	553	Repressor domain.				negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	PML body	protein binding|zinc ion binding		EWSR1/SP3(3)	NS(2)|large_intestine(3)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.185)			GATCAGGTTCTTCTTCCTTGA	0.413000													8	25					0	0	0.013537	0	0
TP53	7157	broad.mit.edu	37	17	7578479	7578479	+	Missense_Mutation	SNP	G	G	A	rs28934874		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:7578479G>A	ENST00000420246.2	-	5	583	c.451C>T	c.(451-453)Ccc>Tcc	p.P151S	TP53_ENST00000413465.2_Missense_Mutation_p.P151S|TP53_ENST00000455263.2_Missense_Mutation_p.P151S|TP53_ENST00000269305.4_Missense_Mutation_p.P151S|TP53_ENST00000445888.2_Missense_Mutation_p.P151S|TP53_ENST00000359597.4_Missense_Mutation_p.P151S	NM_001126114.2|NM_001276696.1	NP_001119586.1|NP_001263625.1	P04637	P53_HUMAN	tumor protein p53	151	Interaction with AXIN1 (By similarity).|Interaction with HIPK1 (By similarity).|Required for interaction with FBXO42.		P -> A (in sporadic cancers; somatic mutation).|P -> H (in sporadic cancers; somatic mutation).|P -> L (in sporadic cancers; somatic mutation).|P -> R (in sporadic cancers; somatic mutation).|P -> S (in LFS; germline mutation and in sporadic cancers; somatic mutation; dbSNP:rs28934874).|P -> T (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.P151S(68)|p.P151T(16)|p.P151A(13)|p.P152fs*18(9)|p.0?(8)|p.T150fs*16(6)|p.P151fs*30(6)|p.?(5)|p.P58A(2)|p.P58S(2)|p.P19A(2)|p.P19S(2)|p.P151_V173del23(1)|p.P152_P153del(1)|p.P152fs*28(1)|p.T57fs*16(1)|p.P151del(1)|p.D148_T155delDSTPPPGT(1)|p.T150_P153delTPPP(1)|p.D148fs*23(1)|p.S149fs*72(1)|p.P58T(1)|p.S149fs*17(1)|p.Q144_G154del11(1)|p.Q144fs*16(1)|p.P19T(1)|p.P152fs*14(1)|p.T18fs*16(1)|p.T150_P151delTP(1)		NS(16)|adrenal_gland(37)|autonomic_ganglia(16)|biliary_tract(273)|bone(108)|breast(2530)|central_nervous_system(1264)|cervix(68)|endometrium(223)|eye(24)|fallopian_tube(1)|gastrointestinal_tract_(site_indeterminate)(1)|genital_tract(16)|haematopoietic_and_lymphoid_tissue(1301)|kidney(96)|large_intestine(5124)|liver(897)|lung(2388)|meninges(5)|oesophagus(1473)|ovary(1659)|pancreas(452)|penis(10)|peritoneum(33)|pituitary(4)|placenta(1)|pleura(3)|prostate(235)|salivary_gland(43)|skin(791)|small_intestine(14)|soft_tissue(220)|stomach(1158)|testis(11)|thymus(21)|thyroid(54)|upper_aerodigestive_tract(2271)|urinary_tract(1259)|vagina(6)|vulva(79)	24185		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCGGGCGGGGGTGTGGAATCA	0.612000		111	"""Mis, N, F"""		"""breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types"""	"""breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types"""		Other conserved DNA damage response genes	Osteosarcoma, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Breast-Ovarian Cancer, non-BRCA1/2;Hereditary Adrenocortical Cancer;Endometrial Cancer, Familial Clustering of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			17	68					0	0	0.028581	0	0
CHD7	55636	broad.mit.edu	37	8	61768603	61768603	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:61768603A>G	ENST00000423902.2	+	33	7485	c.7006A>G	c.(7006-7008)Agg>Ggg	p.R2336G	CHD7_ENST00000524602.1_Intron|CHD7_ENST00000529472.1_3'UTR	NM_017780.3	NP_060250.2	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2336					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			NS(1)|breast(6)|central_nervous_system(8)|cervix(2)|endometrium(16)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(16)|lung(49)|ovary(4)|pancreas(2)|prostate(4)|skin(2)|urinary_tract(3)	123		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GCCAGTAAATAGGCGCCAGAT	0.473000													4	24					0	0	0.009096	0	0
ITIH5	80760	broad.mit.edu	37	10	7611732	7611732	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:7611732T>A	ENST00000256861.6	-	12	2126	c.2048A>T	c.(2047-2049)cAc>cTc	p.H683L	ITIH5_ENST00000446830.2_Missense_Mutation_p.H465L|ITIH5_ENST00000397146.2_Intron|ITIH5_ENST00000298441.6_Missense_Mutation_p.H469L	NM_030569.6	NP_085046.5	Q86UX2	ITIH5_HUMAN	inter-alpha-trypsin inhibitor heavy chain family, member 5	683					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			NS(1)|breast(3)|central_nervous_system(3)|endometrium(5)|kidney(6)|large_intestine(21)|lung(25)|ovary(4)|pancreas(1)|skin(2)|stomach(1)|urinary_tract(3)	75						CACAACAAAGTGGGGATCACC	0.498000													4	25					0	0	0.009096	0	0
ELAC1	55520	broad.mit.edu	37	18	48513137	48513137	+	Silent	SNP	G	G	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr18:48513137G>C	ENST00000269466.3	+	4	881	c.774G>C	c.(772-774)gtG>gtC	p.V258V	SMAD4_ENST00000452201.2_Intron|ELAC1_ENST00000588577.1_3'UTR|RP11-729L2.2_ENST00000590722.2_Intron|RP11-729L2.2_ENST00000588256.1_Intron	NM_018696.2	NP_061166.1	Q9H777	RNZ1_HUMAN	elaC ribonuclease Z 1	258					tRNA 3'-trailer cleavage	nucleus	endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			kidney(1)|large_intestine(4)|prostate(1)	6		Colorectal(6;0.0269)|all_epithelial(6;0.0729)		Colorectal(21;0.000943)|COAD - Colon adenocarcinoma(17;0.0398)|READ - Rectum adenocarcinoma(32;0.0894)|STAD - Stomach adenocarcinoma(97;0.18)		CTGGGGTTGTGGGTGATGGAG	0.458000													6	28					0	0	0.021553	0	0
CDH10	1008	broad.mit.edu	37	5	24509847	24509847	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:24509847G>T	ENST00000264463.4	-	7	1591	c.1084C>A	c.(1084-1086)Cta>Ata	p.L362I		NM_006727.3	NP_006718.2	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 (T2-cadherin)	362	Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(8)|central_nervous_system(2)|cervix(1)|endometrium(9)|kidney(2)|large_intestine(29)|lung(111)|ovary(6)|pancreas(6)|skin(4)|stomach(2)|upper_aerodigestive_tract(4)	185				STAD - Stomach adenocarcinoma(35;0.0556)		AATGGTCCTAGGTAATAAAAA	0.373000										HNSCC(23;0.051)			9	34					0.00448238	0.0049493	0.004482	1	0
FAM71C	196472	broad.mit.edu	37	12	100042223	100042223	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:100042223C>A	ENST00000324341.1	+	1	693	c.271C>A	c.(271-273)Cca>Aca	p.P91T	ANKS1B_ENST00000547776.2_Intron|ANKS1B_ENST00000329257.7_Intron|ANKS1B_ENST00000547010.1_Intron	NM_153364.3	NP_699195.1	Q8NEG0	FA71C_HUMAN	family with sequence similarity 71, member C	91										breast(1)|endometrium(1)|kidney(2)|large_intestine(4)|lung(8)|upper_aerodigestive_tract(1)|urinary_tract(1)	18				OV - Ovarian serous cystadenocarcinoma(2;0.00733)|Epithelial(2;0.0385)|all cancers(2;0.19)		GCTGGCCCGACCAGCTGCTGT	0.552000													18	78					9.16793e-09	1.27868e-08	0.004990	1	0
NRG3	10718	broad.mit.edu	37	10	84738849	84738849	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:84738849C>G	ENST00000372142.2	+	9	1167	c.893C>G	c.(892-894)cCa>cGa	p.P298R	NRG3_ENST00000537893.1_Missense_Mutation_p.P169R|NRG3_ENST00000404547.1_Missense_Mutation_p.P519R|NRG3_ENST00000404576.2_Missense_Mutation_p.P323R|NRG3_ENST00000545131.1_Missense_Mutation_p.P169R|NRG3_ENST00000372141.2_Missense_Mutation_p.P519R|NRG3_ENST00000556918.1_Missense_Mutation_p.P349R	NM_001165973.1	NP_001159445.1	P56975	NRG3_HUMAN	neuregulin 3	519	EGF-like.				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			breast(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(8)|lung(41)|ovary(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(2)	69				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		TCAAGGATCCCAGACCAGGAT	0.468000													8	35					0	0	0.004482	0	0
DCDC1	341019	broad.mit.edu	37	11	31086601	31086601	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:31086601C>G	ENST00000597505.1	-	17	2397	c.2398G>C	c.(2398-2400)Gct>Cct	p.A800P	DCDC1_ENST00000437348.1_5'UTR			P59894	DCDC1_HUMAN	doublecortin domain containing 1	0					intracellular signal transduction					central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(4)|lung(17)|pancreas(2)|prostate(1)|skin(1)|stomach(1)	31	Lung SC(675;0.225)					TCCTGATGAGCTGTGGTCCAG	0.438000													3	53					0	0	0.004672	0	0
LGR6	59352	broad.mit.edu	37	1	202287934	202287934	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:202287934C>T	ENST00000367278.3	+	18	2592	c.2503C>T	c.(2503-2505)Cgg>Tgg	p.R835W	LGR6_ENST00000439764.2_Missense_Mutation_p.R696W|LGR6_ENST00000255432.7_Missense_Mutation_p.R783W	NM_001017403.1	NP_001017403.1	Q9HBX8	LGR6_HUMAN	leucine-rich repeat containing G protein-coupled receptor 6	835						integral to membrane|plasma membrane	protein-hormone receptor activity			breast(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(16)|ovary(3)|pancreas(1)|prostate(3)|skin(3)	36						CCCCCACTTCCGGGATGACCT	0.667000													3	61					0	0	0.004672	0	0
ITGA2	3673	broad.mit.edu	37	5	52386429	52386429	+	Nonstop_Mutation	SNP	A	A	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:52386429A>C	ENST00000296585.5	+	30	3689	c.3546A>C	c.(3544-3546)tgA>tgC	p.*1182C		NM_002203.3	NP_002194.2	P17301	ITA2_HUMAN	integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor)	0					axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			breast(3)|central_nervous_system(2)|endometrium(5)|kidney(3)|large_intestine(8)|liver(1)|lung(18)|pancreas(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	47		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				TCAGTAGCTGAACCAGCAGAC	0.413000													16	49					0	0	0.028581	0	0
SLC19A3	80704	broad.mit.edu	37	2	228560708	228560708	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:228560708C>A	ENST00000258403.3	-	4	1140	c.1069G>T	c.(1069-1071)Gcc>Tcc	p.A357S	SLC19A3_ENST00000541617.1_Missense_Mutation_p.A353S|SLC19A3_ENST00000409287.1_Intron	NM_025243.3	NP_079519.1	Q9BZV2	S19A3_HUMAN	solute carrier family 19 (thiamine transporter), member 3	357					thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			breast(1)|cervix(1)|endometrium(6)|kidney(4)|large_intestine(5)|lung(8)|ovary(2)|skin(3)	30		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	AAAGAACCGGCATTGACAACT	0.458000													7	39					0.000157383	0.000185363	0.003080	1	0
CROCCP2	84809	broad.mit.edu	37	1	16947282	16947282	+	RNA	DEL	C	C	-	rs60920244		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:16947282delC	ENST00000412962.1	-	0	1000																											CAGCAGTTGTCCCTAGCAACT	0.577													3	6	---	---	---	---					
GNG12-AS1	100289178	broad.mit.edu	37	1	68326423	68326423	+	RNA	DEL	T	T	-	rs79522534		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:68326423delT	ENST00000420587.1	+	0	134				GNG12-AS1_ENST00000413628.1_RNA	NR_040077.1		Q6ZVV5	Q6ZVV5_HUMAN																			AAGATTATTATTTTTTTTAAA	0.328													3	3	---	---	---	---					
LOC101927587	101927587	broad.mit.edu	37	1	84094631	84094632	+	RNA	INS	-	-	A	rs66533353	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:84094631_84094632insA	ENST00000417975.1	-	0	280																											GCTTGTTAGTTAAAAAAAAATA	0.411													2	4	---	---	---	---					
LOC101928241	101928241	broad.mit.edu	37	1	96818060	96818061	+	RNA	INS	-	-	T	rs67727219	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:96818060_96818061insT	ENST00000435311.1	-	0	165																											catttgctgtgttttttttccc	0.371													2	4	---	---	---	---					
RP11-202K23.1	0	broad.mit.edu	37	1	102840446	102840453	+	RNA	DEL	AAGGAAAA	AAGGAAAA	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:102840446_102840453delAAGGAAAA	ENST00000447916.1	-	0	339																											aaaaggaaggaaggaaaaaaggaaaaat	0.370													5	6	---	---	---	---					
RP5-936J12.1	0	broad.mit.edu	37	1	103282329	103282329	+	RNA	DEL	A	A	-	rs76720768		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:103282329delA	ENST00000414418.1	-	0	251																											ctgtccttataaaaaaaaaaa	0.373													2	4	---	---	---	---					
AL592494.5	0	broad.mit.edu	37	1	121163387	121163390	+	RNA	DEL	AGAA	AGAA	-	rs57644494		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:121163387_121163390delAGAA	ENST00000417218.1	+	0	551				RP11-343N15.2_ENST00000445260.2_lincRNA																							acgtgctgagagaaagagcagata	0.343													3	4	---	---	---	---					
LOC101927209	101927209	broad.mit.edu	37	1	142649174	142649174	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:142649174delT	ENST00000369381.2	-	0	2507				RP11-417J8.3_ENST00000426408.1_lincRNA																							tctctctctcttttttttttt	0.453													2	4	---	---	---	---					
LOC101927209	101927209	broad.mit.edu	37	1	142680819	142680820	+	RNA	INS	-	-	A	rs150990366		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:142680819_142680820insA	ENST00000369381.2	-	0	2507																											GTGAAGCTAtgaaatgccttca	0.396													3	3	---	---	---	---					
SRGAP2B	647135	broad.mit.edu	37	1	143955026	143955027	+	RNA	INS	-	-	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:143955026_143955027insT	ENST00000467933.1	+	0	915																											AAGAAAAGACATTTTTTTTTTT	0.361													2	4	---	---	---	---					
RP11-403I13.9	0	broad.mit.edu	37	1	149308125	149308126	+	RNA	INS	-	-	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:149308125_149308126insG	ENST00000449024.1	-	0	187																											CAGGATCTGAAGTGGGGGAACA	0.455													3	4	---	---	---	---					
RP11-550P17.5	0	broad.mit.edu	37	1	159366589	159366589	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:159366589delG	ENST00000431862.1	-	0	227																											aaacttgaaaggcagtctaga	0.502													2	4	---	---	---	---					
LOC400794	400794	broad.mit.edu	37	1	165453196	165453196	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:165453196delA	ENST00000421273.1	-	0	1219				RP11-280O1.2_ENST00000416424.1_RNA	NR_026744.1																						actctatctcaaaaaaaaaag	0.512													3	6	---	---	---	---					
RP1-15D23.2	0	broad.mit.edu	37	1	172937567	172937570	+	RNA	DEL	TTCA	TTCA	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:172937567_172937570delTTCA	ENST00000432694.1	+	0	223																											TATTAAATATttcattcattcatt	0.324													2	4	---	---	---	---					
RP1-35C21.2	0	broad.mit.edu	37	1	177459030	177459032	+	RNA	DEL	CCA	CCA	-	rs147015834	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:177459030_177459032delCCA	ENST00000438575.1	-	0	296																											CCTGCCCCCCCCACACACACACA	0.463													2	4	---	---	---	---					
LINC01350	101929093	broad.mit.edu	37	1	185533216	185533217	+	RNA	INS	-	-	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:185533216_185533217insT	ENST00000439633.1	+	0	458																											GCAGGGGTGAGTTTTTTTGGTG	0.485													2	4	---	---	---	---					
RP11-373J16.1	0	broad.mit.edu	37	1	188879151	188879152	+	RNA	INS	-	-	GAAT	rs138831655	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:188879151_188879152insGAAT	ENST00000445072.1	+	0	239																											GTTGAATCCCATATCCTCATGT	0.347													6	5	---	---	---	---					
LOC284577	284577	broad.mit.edu	37	1	205431018	205431018	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:205431018delA	ENST00000442318.1	+	0	481																											tgcctaccttaaaaaaaaaac	0.463													2	4	---	---	---	---					
LOC101927504	101927504	broad.mit.edu	37	1	230018375	230018376	+	RNA	INS	-	-	C	rs11433201	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr1:230018375_230018376insC	ENST00000435973.1	-	0	213																											agatccatttgccccccctcct	0.490													2	4	---	---	---	---					
LOC101929551	101929551	broad.mit.edu	37	2	8039153	8039153	+	RNA	DEL	A	A	-	rs35128767		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:8039153delA	ENST00000416534.1	-	0	50																											actctgcttcaaaaaaaaaaa	0.398													4	2	---	---	---	---					
AC010880.1	0	broad.mit.edu	37	2	16575171	16575171	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:16575171delG	ENST00000427950.1	+	0	157																											GGGGAGGGTTGGGGGCAGAAG	0.537													6	4	---	---	---	---					
AC067959.1	0	broad.mit.edu	37	2	21463327	21463328	+	RNA	INS	-	-	A	rs148386309		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:21463327_21463328insA	ENST00000457901.1	+	0	110																											tggggtattttttttttttttc	0.322													3	3	---	---	---	---					
SRD5A2	6716	broad.mit.edu	37	2	31760094	31760094	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:31760094delT	ENST00000405650.1	-	0	447				AL133247.2_ENST00000435713.1_RNA			P31213	S5A2_HUMAN	steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2)						androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity					Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	TGTGAGTCAAttttttttttt	0.418													3	4	---	---	---	---					
AC079807.4	0	broad.mit.edu	37	2	48261871	48261871	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:48261871delT	ENST00000447571.1	-	0	240																		p.0?(2)									GTTTCACTTATTTTTTTTTTC	0.294													3	6	---	---	---	---					
LINC01122	400955	broad.mit.edu	37	2	58993358	58993358	+	RNA	DEL	T	T	-	rs137976154		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:58993358delT	ENST00000452840.1	+	0	257																											GACATTCCTATTTGACTGCAA	0.383													2	4	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	59682617	59682618	+	RNA	INS	-	-	CAGG			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:59682617_59682618insCAGG	ENST00000606382.1	-	0	433																											TGCTAGTGAACCAGGCTTCCAT	0.376													4	6	---	---	---	---					
RP11-444A22.1	0	broad.mit.edu	37	2	59814086	59814087	+	RNA	INS	-	-	C	rs34129068		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:59814086_59814087insC	ENST00000606382.1	-	0	236																											GCAAAACAACACCCCCAAAATT	0.396													2	4	---	---	---	---					
LOC101927533	101927533	broad.mit.edu	37	2	65727695	65727695	+	RNA	DEL	T	T	-	rs113792144		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:65727695delT	ENST00000377977.3	+	0	343																											TGCTGTTGACTTTTTTTTTTT	0.393													2	4	---	---	---	---					
LOC101927533	101927533	broad.mit.edu	37	2	65738863	65738863	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:65738863delG	ENST00000377977.3	+	0	862																											TTTTTTTTTTGTCCAGGAGGC	0.303													2	4	---	---	---	---					
LOC100507073	100507073	broad.mit.edu	37	2	66802493	66802494	+	RNA	INS	-	-	CTC	rs70947306	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:66802493_66802494insCTC	ENST00000433396.1	+	0	136																											ttcttctccttctcctcctcct	0.530											OREG0014653	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	6	---	---	---	---					
ALMS1P	200420	broad.mit.edu	37	2	73911301	73911302	+	RNA	DEL	TG	TG	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:73911301_73911302delTG	ENST00000450720.1	+	0	985					NR_003683.2																						CTGACCCATCTGTGTGTGTGTG	0.569													2	4	---	---	---	---					
LOC101928273	101928273	broad.mit.edu	37	2	138677599	138677599	+	RNA	DEL	T	T	-	rs59738630		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:138677599delT	ENST00000458351.1	-	0	171																											TACAAACACcttccctttctt	0.483													3	4	---	---	---	---					
AC097721.2	0	broad.mit.edu	37	2	139218290	139218290	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:139218290delA	ENST00000431985.1	-	0	506																											tgaattcaggaaaatttcagg	0.353													2	4	---	---	---	---					
AC073928.2	0	broad.mit.edu	37	2	140864964	140864964	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:140864964delG	ENST00000417715.1	-	0	256																											catgactcatgggaggaagtc	0.408													2	4	---	---	---	---					
LOC100131270	100131270	broad.mit.edu	37	2	159563633	159563634	+	RNA	INS	-	-	AA			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:159563633_159563634insAA	ENST00000342892.4	-	0	275				AC005042.4_ENST00000442666.1_RNA|AC005042.5_ENST00000449526.1_lincRNA																							gttctgacagcagataagagaa	0.421													2	4	---	---	---	---					
LOC101926913	101926913	broad.mit.edu	37	2	171587709	171587710	+	RNA	INS	-	-	GT	rs111342210	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:171587709_171587710insGT	ENST00000442456.1	-	0	837																											TTCCAGTTTGAgtgtgtgtgtg	0.416													2	4	---	---	---	---					
AC018890.6	0	broad.mit.edu	37	2	175571095	175571097	+	RNA	DEL	CCA	CCA	-	rs58692525	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:175571095_175571097delCCA	ENST00000442996.1	+	0	217																											agacccccccccaccgccagata	0.433													4	2	---	---	---	---					
AC018890.4	0	broad.mit.edu	37	2	175651816	175651817	+	RNA	INS	-	-	A	rs12997140	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:175651816_175651817insA	ENST00000416004.1	-	0	55																											ctccgccccccgggttcaagca	0.495													2	4	---	---	---	---					
AC079305.11	0	broad.mit.edu	37	2	177934576	177934578	+	RNA	DEL	TAA	TAA	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr2:177934576_177934578delTAA	ENST00000441205.1	-	0	370																											TTTTATGTAGTAATAATAATAAT	0.300													2	4	---	---	---	---					
AC026167.1	0	broad.mit.edu	37	3	6332481	6332482	+	RNA	DEL	AC	AC	-	rs72162866		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:6332481_6332482delAC	ENST00000435651.1	+	0	95																											AGTCAGAATAacacacacacac	0.307													4	2	---	---	---	---					
LMCD1-AS1	100288428	broad.mit.edu	37	3	8089656	8089656	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:8089656delA	ENST00000446281.1	-	0	514																											aactccatctaaaaaaaaaaa	0.463													2	4	---	---	---	---					
HHATL-AS1	100874044	broad.mit.edu	37	3	42746571	42746572	+	RNA	INS	-	-	TTGC	rs140309339	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:42746571_42746572insTTGC	ENST00000600839.1	+	0	103																											tatcctgtgtattgtgtgtgca	0.436													3	4	---	---	---	---					
ADAMTS9-AS2	100507098	broad.mit.edu	37	3	64775526	64775527	+	RNA	DEL	AC	AC	-	rs76760776		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:64775526_64775527delAC	ENST00000460833.1	+	0	430				ADAMTS9-AS2_ENST00000474768.1_RNA|ADAMTS9-AS2_ENST00000481312.1_RNA																							CAGTTcacagacacacacacac	0.396													4	7	---	---	---	---					
LINC00971	440970	broad.mit.edu	37	3	84770231	84770232	+	RNA	DEL	AC	AC	-	rs71758209		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:84770231_84770232delAC	ENST00000484892.1	-	0	1846					NR_033860.1																						tctctactaaacacacacacac	0.520													2	4	---	---	---	---					
RP11-572M11.4	0	broad.mit.edu	37	3	112826070	112826070	+	RNA	DEL	T	T	-	rs4146777		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:112826070delT	ENST00000460707.1	+	0	390				RP11-572M11.4_ENST00000496389.1_RNA																							TGGAGAGCAATTAAGAATCTC	0.423													3	3	---	---	---	---					
RP11-384F7.1	0	broad.mit.edu	37	3	117734494	117734495	+	RNA	INS	-	-	T	rs79550334		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:117734494_117734495insT	ENST00000482142.1	-	0	655																											attttctctgcttttttttttt	0.337													2	4	---	---	---	---					
RP11-384F7.1	0	broad.mit.edu	37	3	117970103	117970103	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:117970103delT	ENST00000482142.1	-	0	232																											AGCATAAAACTTACCTCCTTA	0.438													2	4	---	---	---	---					
NPHP3-AS1	348808	broad.mit.edu	37	3	132567884	132567885	+	RNA	DEL	TC	TC	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:132567884_132567885delTC	ENST00000504440.1	+	0	1751					NR_002811.1																						TACCATCACATCTCTCTCTCTT	0.446													5	10	---	---	---	---					
AADACL2-AS1	101928142	broad.mit.edu	37	3	151612437	151612437	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:151612437delG	ENST00000483843.2	-	0	439				RP11-454C18.2_ENST00000475855.1_RNA																							gttggtagaagggaattgatg	0.373													2	4	---	---	---	---					
LINC00578	100505566	broad.mit.edu	37	3	177465195	177465198	+	RNA	DEL	TAAG	TAAG	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:177465195_177465198delTAAG	ENST00000442937.1	+	0	428					NR_047568.1																						TCTTAGGAAATAAGTAAGACTAAG	0.333													3	3	---	---	---	---					
LINC00578	100505566	broad.mit.edu	37	3	177469546	177469546	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:177469546delG	ENST00000442937.1	+	0	428					NR_047568.1																						tagctggtgagcggagacgaa	0.483													2	4	---	---	---	---					
RP11-30O15.1	0	broad.mit.edu	37	3	187514482	187514483	+	RNA	INS	-	-	T	rs144868988	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr3:187514482_187514483insT	ENST00000433178.1	+	0	177																											TTACTGTGTGATTTTTTTTTCC	0.342													5	8	---	---	---	---					
RP11-608O21.1	0	broad.mit.edu	37	4	19680668	19680669	+	RNA	INS	-	-	CTT	rs75300745	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:19680668_19680669insCTT	ENST00000511431.1	+	0	288																											TATGGTTCTGACTTCCTCATGA	0.505													4	1	---	---	---	---					
RP11-548L20.1	0	broad.mit.edu	37	4	34270378	34270379	+	RNA	INS	-	-	A	rs79066903	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:34270378_34270379insA	ENST00000514877.1	-	0	125																											ccgtcccccccaaaaaaaaaga	0.431													2	4	---	---	---	---					
RP11-556I14.2	0	broad.mit.edu	37	4	105865452	105865452	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:105865452delT	ENST00000515127.1	-	0	248																											AGAGCTGTCCTTTTTCTCTAG	0.373													2	4	---	---	---	---					
LEF1-AS1	641518	broad.mit.edu	37	4	109134671	109134671	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:109134671delG	ENST00000512129.1	+	0	238																											ACCTTTCTTAGGACTGCTCAG	0.562													2	4	---	---	---	---					
PRSS12	8492	broad.mit.edu	37	4	119273504	119273505	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:119273504_119273505insG	ENST00000296498.3	-	1	653_654	c.371_372insC	c.(370-372)cgcfs	p.R124fs		NM_003619.3	NP_003610.2	P56730	NETR_HUMAN	protease, serine, 12 (neurotrypsin, motopsin)	124	Kringle.					membrane	scavenger receptor activity			endometrium(3)|kidney(1)|large_intestine(9)|lung(11)|prostate(1)|skin(2)|stomach(1)|urinary_tract(1)	29						CCCAGCTCGCTGGGGGCGACCG	0.718													3	4	---	---	---	---					
LOC729218	729218	broad.mit.edu	37	4	119545019	119545019	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:119545019delA	ENST00000567913.2	+	0	856																											ttttgtagtcaagagtttcgc	0.537													9	1	---	---	---	---					
RP11-789C2.1	0	broad.mit.edu	37	4	132988084	132988084	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:132988084delA	ENST00000420721.2	-	0	181																											TATTAGTGTGAAAAAATCTGT	0.259													3	6	---	---	---	---					
RP11-775H9.2	0	broad.mit.edu	37	4	137144494	137144495	+	RNA	INS	-	-	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:137144494_137144495insA	ENST00000513332.1	-	0	279																											GGGATAAGGGCAAAAAACTGTG	0.312													2	4	---	---	---	---					
RP11-284M14.1	0	broad.mit.edu	37	4	144036033	144036034	+	RNA	INS	-	-	A	rs11412346		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:144036033_144036034insA	ENST00000507826.1	-	0	354																											gaacttaaagtaaaaaaaaaaa	0.347													3	4	---	---	---	---					
RP11-284M14.1	0	broad.mit.edu	37	4	144068709	144068710	+	RNA	INS	-	-	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:144068709_144068710insC	ENST00000507826.1	-	0	354																											gaccttaaaaaccccctTCTCC	0.356													2	4	---	---	---	---					
RP11-526A4.1	0	broad.mit.edu	37	4	150666720	150666721	+	RNA	INS	-	-	A	rs140466350	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:150666720_150666721insA	ENST00000511993.1	-	0	330																											ACGGTTACAGGAATGCTAAGGA	0.376													4	2	---	---	---	---					
RP11-526A4.1	0	broad.mit.edu	37	4	150721961	150721961	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:150721961delA	ENST00000511993.1	-	0	267																											tgaaaactataaaacactaat	0.289													2	4	---	---	---	---					
RP11-97E7.2	0	broad.mit.edu	37	4	172533959	172533960	+	RNA	INS	-	-	A	rs141043206	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:172533959_172533960insA	ENST00000508977.1	-	0	277																											aaataccactgaaaaaaaatca	0.327													3	3	---	---	---	---					
LOC90768	90768	broad.mit.edu	37	4	182951205	182951206	+	RNA	INS	-	-	TTG	rs78952088	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:182951205_182951206insTTG	ENST00000507869.1	-	0	354				AC108142.1_ENST00000509012.1_RNA																							TCAATGCATCTttgttgttgtt	0.366													4	3	---	---	---	---					
LOC101928877	101928877	broad.mit.edu	37	4	185984721	185984721	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:185984721delT	ENST00000509017.1	+	0	764																											AATGAAGttcttttttttttt	0.478													2	4	---	---	---	---					
F11-AS1	285441	broad.mit.edu	37	4	187260975	187260976	+	RNA	DEL	AA	AA	-	rs10553681		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:187260975_187260976delAA	ENST00000505103.1	-	0	153					NR_033900.1																						cgagactgtcaaaaaaaaaaaa	0.470													3	5	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190820380	190820380	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:190820380delT	ENST00000511785.1	-	0	231																											AGTTATTATATTTTTAAACCT	0.343													2	4	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190827130	190827131	+	RNA	INS	-	-	A	rs143153030		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr4:190827130_190827131insA	ENST00000511785.1	-	0	231																											tataagtatatttttttaattt	0.208													2	4	---	---	---	---					
RP11-122F24.1	0	broad.mit.edu	37	5	7071638	7071638	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:7071638delT	ENST00000512838.1	+	0	154																											ccttttttccttttttttttt	0.398													3	6	---	---	---	---					
LOC729506	729506	broad.mit.edu	37	5	8415036	8415037	+	RNA	INS	-	-	CC			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:8415036_8415037insCC	ENST00000501071.1	-	0	168				RP11-480D4.2_ENST00000512406.1_lincRNA	NR_039984.1																						caagtgtcacacccccccacca	0.510													3	5	---	---	---	---					
RP11-6N13.1	0	broad.mit.edu	37	5	103911844	103911845	+	RNA	INS	-	-	CCT	rs113662380		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:103911844_103911845insCCT	ENST00000503650.1	-	0	328																											tccctctcctccctctctccct	0.609													2	4	---	---	---	---					
LOC102467213	102467213	broad.mit.edu	37	5	106299407	106299409	+	RNA	DEL	AAG	AAG	-	rs33955145		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:106299407_106299409delAAG	ENST00000505997.1	-	0	106																											gaatgaaAATAAGAAGCCTAAGC	0.360													3	3	---	---	---	---					
LINC01183	728586	broad.mit.edu	37	5	127118141	127118141	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:127118141delT	ENST00000514853.2	+	0	278																											ggtcctggacttttttttttg	0.338													2	4	---	---	---	---					
LOC101927115	101927115	broad.mit.edu	37	5	151416726	151416726	+	RNA	DEL	T	T	-	rs147513035		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:151416726delT	ENST00000524295.1	+	0	199																											taacccctgcttttttttttt	0.373													3	3	---	---	---	---					
LOC102546299	102546299	broad.mit.edu	37	5	164079364	164079365	+	RNA	INS	-	-	T	rs60024868		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:164079364_164079365insT	ENST00000517508.1	+	0	716				CTC-340A15.2_ENST00000522646.1_RNA|CTC-340A15.2_ENST00000519750.1_RNA|CTC-340A15.2_ENST00000522303.1_RNA|CTC-340A15.2_ENST00000519570.1_RNA|CTC-340A15.2_ENST00000523704.1_RNA																							tttcttttttgttttttttttt	0.332													4	2	---	---	---	---					
FLJ16171	441116	broad.mit.edu	37	5	174382174	174382174	+	RNA	DEL	T	T	-	rs113018091		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:174382174delT	ENST00000377300.3	-	0	1281					NR_046113.1																						ATTTCTTTGCTTTTTTTTCtt	0.323													5	3	---	---	---	---					
THOC3	84321	broad.mit.edu	37	5	175361487	175361488	+	RNA	INS	-	-	A	rs56342669	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr5:175361487_175361488insA	ENST00000502813.1	-	0	87																											caaagaaatgcaaaaaaaaaag	0.332													3	3	---	---	---	---					
ZNRD1-AS1	80862	broad.mit.edu	37	6	30017927	30017928	+	RNA	INS	-	-	A	rs150424905	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:30017927_30017928insA	ENST00000376797.3	-	0	259				ZNRD1-AS1_ENST00000448093.1_RNA|ZNRD1-AS1_ENST00000437417.1_RNA|ZNRD1-AS1_ENST00000422224.1_RNA|ZNRD1-AS1_ENST00000420251.1_RNA|ZNRD1-AS1_ENST00000421692.1_RNA|ZNRD1-AS1_ENST00000425604.1_RNA																							actaaaaatacaaaattagctg	0.520													3	3	---	---	---	---					
HCG20	414774	broad.mit.edu	37	6	30735656	30735656	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:30735656delT	ENST00000439406.1	+	0	127																											catgaactgcttttttttttt	0.507													3	3	---	---	---	---					
ADCY10P1	221442	broad.mit.edu	37	6	41105476	41105477	+	RNA	INS	-	-	GAA	rs111233412	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:41105476_41105477insGAA	ENST00000567255.1	+	0	3999					NR_026938.2																						TCTGCATTTCTGAAGAAGTATT	0.416													4	2	---	---	---	---					
TINAG	27283	broad.mit.edu	37	6	54254605	54254605	+	Frame_Shift_Del	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:54254605delG	ENST00000259782.4	+	11	1409	c.1313delG	c.(1312-1314)tgfs	p.W438fs		NM_014464.3	NP_055279.3	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	438					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(11)|ovary(4)|skin(1)	34	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GCCAATTCCTGGGGAAAGTCA	0.393													17	87	---	---	---	---					
LOC100507557	100507557	broad.mit.edu	37	6	146197512	146197512	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:146197512delA	ENST00000606388.1	+	0	580				RP11-545I5.3_ENST00000587540.1_RNA|RP11-545I5.3_ENST00000452617.1_RNA|RP11-545I5.3_ENST00000591489.1_RNA	NR_038245.1|NR_038246.1																						cccatcctctaaaaaaaataa	0.373													2	4	---	---	---	---					
LOC102724087	102724087	broad.mit.edu	37	6	161373502	161373503	+	RNA	INS	-	-	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr6:161373502_161373503insA	ENST00000417479.1	+	0	293																											TTTATGGAGTCAAAAAAAACCC	0.356													2	4	---	---	---	---					
LOC101927630	101927630	broad.mit.edu	37	7	17506542	17506542	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:17506542delT	ENST00000451792.1	-	0	287																											TAGGCAATGGTTTGATGCCAA	0.333													2	4	---	---	---	---					
RP4-724E13.2	0	broad.mit.edu	37	7	50988185	50988185	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:50988185delT	ENST00000420449.1	+	0	24																											ATTGATGAGATTTGGATGACA	0.433													2	4	---	---	---	---					
RP4-724E13.2	0	broad.mit.edu	37	7	50996886	50996887	+	RNA	DEL	TG	TG	-	rs59007756		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:50996886_50996887delTG	ENST00000420449.1	+	0	24																											tgtatatttatgtgtgtgtgtg	0.421													4	4	---	---	---	---					
INTS4P1	285905	broad.mit.edu	37	7	64677143	64677146	+	RNA	DEL	CTTT	CTTT	-	rs5884556		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:64677143_64677146delCTTT	ENST00000587624.1	+	0	1437																											tcgttccttcctttttcttttttt	0.451													4	4	---	---	---	---					
RP11-142A5.1	0	broad.mit.edu	37	7	91142826	91142826	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:91142826delA	ENST00000456952.1	-	0	112																											TGGTTTATTTAAAAAAAAaaa	0.323													2	4	---	---	---	---					
RP11-142A5.1	0	broad.mit.edu	37	7	91164504	91164504	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:91164504delT	ENST00000456952.1	-	0	112																											TTTCTTTTCCTTTTTtttttt	0.348													3	4	---	---	---	---					
ZAN	7455	broad.mit.edu	37	7	100333192	100333193	+	RNA	INS	-	-	A	rs141210381	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:100333192_100333193insA	ENST00000542585.1	+	0	201				ZAN_ENST00000546292.1_RNA|ZAN_ENST00000443370.1_RNA|ZAN_ENST00000421100.1_RNA|ZAN_ENST00000449052.1_RNA|ZAN_ENST00000546213.1_RNA|ZAN_ENST00000349350.6_RNA|ZAN_ENST00000348028.3_RNA|ZAN_ENST00000538115.1_RNA|ZAN_ENST00000427578.1_RNA	NM_003386.1	NP_003377.1	Q9Y493	ZAN_HUMAN	zonadhesin (gene/pseudogene)						binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				NS(2)|breast(3)|central_nervous_system(3)|endometrium(21)|kidney(6)|large_intestine(18)|lung(60)|ovary(4)|pancreas(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)	139	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			aaaaagaaaagaaaaaaagaaa	0.426													5	1	---	---	---	---					
RP11-61D3.1	0	broad.mit.edu	37	7	122709570	122709571	+	RNA	INS	-	-	A	rs71958109		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:122709570_122709571insA	ENST00000420146.2	-	0	240																											AAGTTAATCTGAAAAAAAAAAA	0.411													2	4	---	---	---	---					
AC000370.2	0	broad.mit.edu	37	7	126021798	126021799	+	RNA	INS	-	-	T	rs147334788	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:126021798_126021799insT	ENST00000488818.1	+	0	32																											TTTCTTTGTCATTTTTTTTTAC	0.342													4	6	---	---	---	---					
AC008154.5	0	broad.mit.edu	37	7	134034100	134034100	+	RNA	DEL	C	C	-	rs35257540		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:134034100delC	ENST00000453087.1	-	0	112																											TCCCAGATGTCCGCCATCACA	0.408													5	2	---	---	---	---					
LOC349160	349160	broad.mit.edu	37	7	136477944	136477945	+	RNA	INS	-	-	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:136477944_136477945insT	ENST00000439694.1	-	0	343				AC009264.1_ENST00000598184.1_RNA|AC009264.1_ENST00000597642.1_RNA|AC009264.1_ENST00000593789.1_RNA|AC009264.1_ENST00000592183.1_RNA|AC009264.1_ENST00000586239.1_RNA																							agctgaaagcctttcctctaag	0.391													2	4	---	---	---	---					
PRSS3P2	154754	broad.mit.edu	37	7	142481996	142481997	+	RNA	INS	-	-	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr7:142481996_142481997insC	ENST00000603901.1	+	0	591					NR_001296.3																						TCCCAAGGTGGGGGGCTGAGGA	0.564													8	25	---	---	---	---					
RP11-624C23.1	0	broad.mit.edu	37	8	24274417	24274417	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:24274417delT	ENST00000519689.1	-	0	184				RP11-624C23.1_ENST00000523578.1_RNA																							CCTACTGTCATTTTTGAGGAT	0.363													2	4	---	---	---	---					
RP11-586K2.1	0	broad.mit.edu	37	8	89347276	89347277	+	RNA	INS	-	-	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:89347276_89347277insG	ENST00000521433.1	+	0	179				RP11-586K2.1_ENST00000523254.1_RNA																							AGACCTTTTTTGGGGGGGGCAT	0.376													3	5	---	---	---	---					
RP11-586K2.1	0	broad.mit.edu	37	8	89723607	89723607	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:89723607delA	ENST00000521936.1	+	0	59																											acctaatctgaaaatccaaaa	0.358													2	4	---	---	---	---					
FLJ46284	441369	broad.mit.edu	37	8	93724218	93724218	+	RNA	DEL	T	T	-	rs5893223		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:93724218delT	ENST00000521148.1	-	0	256				RP11-100L22.2_ENST00000521230.1_RNA																							GGTTGAGGACTTTTTTTTTTT	0.323													3	4	---	---	---	---					
LOC101927172	101927172	broad.mit.edu	37	8	102486128	102486130	+	RNA	DEL	TTT	TTT	-	rs148760035		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:102486128_102486130delTTT	ENST00000520268.1	-	0	50																											CCAGtttgtcttttttttttttt	0.448													2	4	---	---	---	---					
KB-1507C5.4	0	broad.mit.edu	37	8	103998858	103998858	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:103998858delT	ENST00000517983.1	+	0	171																											ATTTATTTGGTTTTTTTCCTG	0.353													2	4	---	---	---	---					
PCAT2	103164619	broad.mit.edu	37	8	128085952	128085953	+	RNA	INS	-	-	ACA	rs144814101	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:128085952_128085953insACA	ENST00000523510.1	-	0	350																											aagttaatatcacaagatacca	0.376													4	2	---	---	---	---					
CCDC26	137196	broad.mit.edu	37	8	130451050	130451051	+	RNA	INS	-	-	TATT	rs140714084	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:130451050_130451051insTATT	ENST00000446592.3	-	0	360				RP11-26E5.1_ENST00000519048.1_lincRNA																							GTACTTGTGTCTATCAACATCA	0.317													5	3	---	---	---	---					
LOC101927822	101927822	broad.mit.edu	37	8	134906172	134906173	+	RNA	DEL	CC	CC	-	rs141137808		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:134906172_134906173delCC	ENST00000520149.2	+	0	45																											cacacacacaccccccacaagc	0.441													6	8	---	---	---	---					
RP11-513H8.1	0	broad.mit.edu	37	8	135311676	135311676	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:135311676delG	ENST00000523317.1	-	0	84																											gccattggctggcagcacagc	0.527													2	4	---	---	---	---					
RP11-30J20.1	0	broad.mit.edu	37	8	137821626	137821626	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:137821626delG	ENST00000521090.1	+	0	478																											AGTTGAAACTGGGAAGTAGCC	0.408													2	4	---	---	---	---					
LOC401478	401478	broad.mit.edu	37	8	138882918	138882918	+	RNA	DEL	A	A	-	rs34259329		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr8:138882918delA	ENST00000518973.1	-	0	514				RP11-238K6.2_ENST00000519652.1_lincRNA																							actccatctcaaaaaaaaaaa	0.438													2	4	---	---	---	---					
RP11-74C3.1	0	broad.mit.edu	37	9	12128014	12128015	+	RNA	DEL	TC	TC	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr9:12128014_12128015delTC	ENST00000452685.1	-	0	160																											gtatgtgtgtTCTCTCTCTCTC	0.376													2	4	---	---	---	---					
LINC01239	441389	broad.mit.edu	37	9	22732587	22732588	+	RNA	INS	-	-	T	rs141546526	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr9:22732587_22732588insT	ENST00000436786.1	+	0	524					NR_038977.1																						cctagtacccatagttattttt	0.431													3	2	---	---	---	---					
RP11-149F8.5	0	broad.mit.edu	37	9	68330988	68330988	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr9:68330988delT	ENST00000431077.1	+	0	123																											ttggaaggagttttttttttt	0.348													2	4	---	---	---	---					
RP11-764K9.1	0	broad.mit.edu	37	9	68402587	68402587	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr9:68402587delA	ENST00000417843.2	-	0	224																											TGTAAAATTTAGGCAGAATTT	0.289													2	4	---	---	---	---					
LOC101927964	101927964	broad.mit.edu	37	10	4123632	4123632	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:4123632delA	ENST00000455199.1	+	0	432																											gaaaaagaagaaaaaaaaaaa	0.483													3	5	---	---	---	---					
LINC01375	101926924	broad.mit.edu	37	10	91687680	91687681	+	RNA	INS	-	-	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:91687680_91687681insG	ENST00000428485.1	-	0	577																											tggccaaggtcggggggcagtg	0.515													2	4	---	---	---	---					
EMX2OS	196047	broad.mit.edu	37	10	119245865	119245866	+	RNA	INS	-	-	TGAA	rs71475198	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:119245865_119245866insTGAA	ENST00000549104.1	+	0	268				EMX2OS_ENST00000450314.2_RNA																							ctctgtgtctttggctttttcc	0.505													5	4	---	---	---	---					
CASC2	255082	broad.mit.edu	37	10	119831099	119831099	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:119831099delA	ENST00000435944.1	+	0	452				CASC2_ENST00000454857.1_RNA|CASC2_ENST00000439517.1_RNA|CASC2_ENST00000414722.1_RNA|CASC2_ENST00000454781.1_RNA	NR_026939.1																						AAACTCTTATAAAGATAAATT	0.289													2	4	---	---	---	---					
RP11-168C9.1	0	broad.mit.edu	37	10	131076764	131076765	+	RNA	INS	-	-	A	rs111657112		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr10:131076764_131076765insA	ENST00000414581.1	+	0	83																											TACAATAACTCAAAAAAAAAAA	0.446													3	4	---	---	---	---					
LOC283299	283299	broad.mit.edu	37	11	7847746	7847746	+	RNA	DEL	T	T	-	rs80106926		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:7847746delT	ENST00000527565.1	-	0	542																											CAGAAAAATCTTTTTTTTTTT	0.308													3	3	---	---	---	---					
RP11-98J9.2	0	broad.mit.edu	37	11	13899773	13899774	+	RNA	INS	-	-	A	rs11427139		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:13899773_13899774insA	ENST00000530492.1	-	0	78																											atcctTTACTCAAAAAAACAGC	0.446													4	2	---	---	---	---					
SPON1	10418	broad.mit.edu	37	11	14199968	14199968	+	RNA	DEL	A	A	-	rs67971507		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:14199968delA	ENST00000310358.7	+	0	1360							Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein						cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding			NS(1)|endometrium(1)|large_intestine(5)|lung(11)|prostate(2)|upper_aerodigestive_tract(1)	21				Epithelial(150;0.00898)		actccgtctcaaaaaaaaaaa	0.488													3	5	---	---	---	---					
RP11-624D11.2	0	broad.mit.edu	37	11	30104439	30104439	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:30104439delA	ENST00000527819.1	-	0	31																											CTCTAAGGTTaaaaaaaaaag	0.333													2	4	---	---	---	---					
RP11-613D13.4	0	broad.mit.edu	37	11	43969243	43969243	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:43969243delA	ENST00000526408.1	+	0	153																											TGAGAGACAGAAGGATAAAGG	0.512													2	4	---	---	---	---					
LOC283194	283194	broad.mit.edu	37	11	58820000	58820001	+	RNA	INS	-	-	T	rs142784521	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:58820000_58820001insT	ENST00000533954.1	-	0	458				RP11-142C4.6_ENST00000532098.1_RNA	NR_033853.1																						AGATTTGCCTATTCAAAATGGT	0.446													4	4	---	---	---	---					
PATL1	219988	broad.mit.edu	37	11	59425145	59425146	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:59425145_59425146insG	ENST00000300146.9	-	5	562_563	c.478_479insC	c.(478-480)gggfs	p.G160fs		NM_152716.2	NP_689929.2	Q86TB9	PATL1_HUMAN	protein associated with topoisomerase II homolog 1 (yeast)	160	Pro-rich.|Region N; interaction with decapping machinery.			Q -> H (in Ref. 2; BAG54601).	cytoplasmic mRNA processing body assembly|deadenylation-dependent decapping of nuclear-transcribed mRNA	cytoplasmic mRNA processing body	protein binding|RNA binding			central_nervous_system(1)|endometrium(2)|lung(5)|ovary(1)|prostate(2)	11						TTCTGGACCCTGGGGGGGCCTC	0.455													7	81	---	---	---	---					
AP001257.1	0	broad.mit.edu	37	11	59927487	59927488	+	RNA	INS	-	-	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:59927487_59927488insG	ENST00000533106.1	-	0	202																											AAAAAAATGTTGGGGGGGAGGA	0.421													2	4	---	---	---	---					
LOC101928989	101928989	broad.mit.edu	37	11	81733384	81733384	+	RNA	DEL	A	A	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:81733384delA	ENST00000500502.1	-	0	813																											atttcatctcaaaaaaaaaat	0.418													2	4	---	---	---	---					
DISC1FP1	101929222	broad.mit.edu	37	11	90436413	90436421	+	RNA	DEL	GGTACTGTA	GGTACTGTA	-	rs34014114		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:90436413_90436421delGGTACTGTA	ENST00000562678.1	+	0	185																											atccccacttggtactgtaggtactgtat	0.435													3	3	---	---	---	---					
RP11-708B6.2	0	broad.mit.edu	37	11	109396697	109396697	+	RNA	DEL	C	C	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr11:109396697delC	ENST00000532929.1	-	0	117				RP11-708B6.2_ENST00000532992.1_RNA																							gtaatcccaactacttgggag	0.552													2	4	---	---	---	---					
EMG1	10436	broad.mit.edu	37	12	7081125	7081127	+	RNA	DEL	TCC	TCC	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:7081125_7081127delTCC	ENST00000546220.1	+	0	198				U47924.19_ENST00000564245.1_RNA|U47924.28_ENST00000261406.6_lincRNA			Q92979	NEP1_HUMAN	EMG1 N1-specific pseudouridine methyltransferase						ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding										GCAGTGTTCTTCCTCCTCCTTTC	0.374													2	4	---	---	---	---					
RP11-114H23.1	0	broad.mit.edu	37	12	76029026	76029026	+	RNA	DEL	A	A	-	rs58638346		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:76029026delA	ENST00000552856.1	-	0	401																											AGGTCTCTGTAAAAAAAAAAA	0.368													2	4	---	---	---	---					
RP11-13A1.3	0	broad.mit.edu	37	12	89639817	89639818	+	RNA	INS	-	-	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:89639817_89639818insC	ENST00000549278.1	-	0	144																											GAGAGGTGATTCCCCCCAAAAA	0.411													2	4	---	---	---	---					
RP11-1060G2.1	0	broad.mit.edu	37	12	94325659	94325662	+	RNA	DEL	AAGG	AAGG	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:94325659_94325662delAAGG	ENST00000550687.1	-	0	59																											agaaggaagaaaggaaggaaggaa	0.446													4	4	---	---	---	---					
RP11-690J15.1	0	broad.mit.edu	37	12	98588684	98588685	+	RNA	INS	-	-	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:98588684_98588685insC	ENST00000548344.1	-	0	68																											CTCTGTAATCACCCCCGTTGCC	0.406													2	4	---	---	---	---					
FOXN4	121643	broad.mit.edu	37	12	109725661	109725662	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:109725661_109725662insG	ENST00000299162.5	-	5	559_560	c.455_456insC	c.(454-456)cggfs	p.R152fs	FOXN4_ENST00000355216.1_Intron	NM_213596.2	NP_998761.2	Q96NZ1	FOXN4_HUMAN	forkhead box N4	152	Pro-rich.				axon extension|embryo development|organ development|pattern specification process|regulation of heart contraction|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			large_intestine(5)|lung(9)|ovary(2)	16						GCTGGGCACCCGGGGGGAGCGG	0.673													3	3	---	---	---	---					
RP11-357K6.3	0	broad.mit.edu	37	12	119301192	119301193	+	RNA	INS	-	-	TGAA	rs35024448	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr12:119301192_119301193insTGAA	ENST00000544515.1	-	0	447																											caagtaattgCtgaatgaatga	0.386													3	5	---	---	---	---					
LINC00383	103689913	broad.mit.edu	37	13	69835394	69835395	+	RNA	DEL	GT	GT	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr13:69835394_69835395delGT	ENST00000433664.1	+	0	103																											gtgtgtgtgcgtgtgtgtgtgt	0.366													2	4	---	---	---	---					
BMS1P18	414763	broad.mit.edu	37	14	19891054	19891055	+	RNA	DEL	CT	CT	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr14:19891054_19891055delCT	ENST00000552602.1	-	0	293																											tacacacacactcacactaaca	0.525													2	4	---	---	---	---					
LINC00871	100506412	broad.mit.edu	37	14	46620331	46620332	+	RNA	INS	-	-	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr14:46620331_46620332insA	ENST00000556886.1	+	0	58					NR_102701.1																						gctggcctcataaaatgagtta	0.386													2	4	---	---	---	---					
OTX2-AS1	100309464	broad.mit.edu	37	14	57372958	57372959	+	RNA	DEL	TG	TG	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr14:57372958_57372959delTG	ENST00000534909.2	+	0	474				OTX2-AS1_ENST00000554725.1_RNA|OTX2-AS1_ENST00000554358.1_RNA|OTX2-AS1_ENST00000554428.1_RNA	NR_029385.1																						TGCTGGCGTTTGTGTGTGTGTG	0.416													2	4	---	---	---	---					
OTX2-AS1	100309464	broad.mit.edu	37	14	57434962	57434963	+	RNA	INS	-	-	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr14:57434962_57434963insC	ENST00000554725.1	+	0	344																											cacacttcctacccCCCGCACC	0.505													3	4	---	---	---	---					
RP11-72M17.1	0	broad.mit.edu	37	14	66717081	66717081	+	RNA	DEL	T	T	-	rs139051430		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr14:66717081delT	ENST00000556874.1	-	0	643																											gagactacaattttttttttc	0.478													5	3	---	---	---	---					
LINC01146	283587	broad.mit.edu	37	14	88519941	88519941	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr14:88519941delT	ENST00000556033.1	+	0	195					NR_046094.1																						attaattttgtatcctgaaac	0.383													4	5	---	---	---	---					
RP11-1070N10.5	0	broad.mit.edu	37	14	96093114	96093114	+	RNA	DEL	G	G	-	rs34803022		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr14:96093114delG	ENST00000555032.1	+	0	120																											gactgttctaggtacctcata	0.388													3	6	---	---	---	---					
AC124997.1	0	broad.mit.edu	37	15	25761462	25761462	+	RNA	DEL	T	T	-	rs148802085		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:25761462delT	ENST00000422117.1	-	0	167																											ttcctttctgttttaaaaagt	0.418													5	1	---	---	---	---					
DPH6-AS1	100507466	broad.mit.edu	37	15	35883211	35883212	+	RNA	INS	-	-	A	rs78106467		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:35883211_35883212insA	ENST00000501169.2	+	0	279					NR_038251.1																						ccttgttgctcaaaaaaaAAAA	0.455													3	4	---	---	---	---					
RP11-184D12.1	0	broad.mit.edu	37	15	36315173	36315174	+	RNA	INS	-	-	G			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:36315173_36315174insG	ENST00000561394.1	-	0	199																											CATGGAGGGCCGGGGGGAAGAG	0.490													2	4	---	---	---	---					
RP11-184D12.1	0	broad.mit.edu	37	15	36376545	36376546	+	RNA	INS	-	-	ACACACAC	rs112831025	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:36376545_36376546insACACACAC	ENST00000561394.1	-	0	136																											atcaaacaaggacacacacaca	0.386													2	4	---	---	---	---					
RP11-624L4.1	0	broad.mit.edu	37	15	39672248	39672249	+	RNA	INS	-	-	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr15:39672248_39672249insA	ENST00000559318.1	-	0	408				RP11-624L4.1_ENST00000558209.1_RNA|RP11-624L4.1_ENST00000560484.1_RNA																							ttaaaaaccagaaaaaaacaag	0.406													2	4	---	---	---	---					
RP11-279O17.3	0	broad.mit.edu	37	16	8375581	8375584	+	RNA	DEL	AATG	AATG	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr16:8375581_8375584delAATG	ENST00000564185.1	+	0	223																											caagtgaaccaatgaatgaatgaa	0.353													2	4	---	---	---	---					
U91319.1	0	broad.mit.edu	37	16	13470887	13470888	+	RNA	INS	-	-	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr16:13470887_13470888insA	ENST00000571619.1	+	0	420																											AAGTTAATGAGAAAAAAACCTT	0.446													2	4	---	---	---	---					
CTA-481E9.3	0	broad.mit.edu	37	16	18255179	18255179	+	RNA	DEL	A	A	-	rs66994148		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr16:18255179delA	ENST00000563866.1	-	0	48																											atcctgtctcaaaaaaaaaaa	0.498													3	2	---	---	---	---					
LOC101927580	101927580	broad.mit.edu	37	16	60036934	60036934	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr16:60036934delT	ENST00000568279.1	+	0	173																											ctttttttcctttttttcttt	0.353													2	4	---	---	---	---					
RP11-467L24.1	0	broad.mit.edu	37	16	64492876	64492876	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr16:64492876delT	ENST00000564046.1	+	0	116																											CTTTGTTACATTTTTTTATTA	0.413													2	4	---	---	---	---					
LINC01572	101927957	broad.mit.edu	37	16	72475438	72475439	+	RNA	INS	-	-	T			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr16:72475438_72475439insT	ENST00000561611.2	-	0	221																											atatgtgactctttttttcact	0.356													2	4	---	---	---	---					
RP11-525K10.1	0	broad.mit.edu	37	16	80108484	80108485	+	RNA	INS	-	-	AA	rs72126411		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr16:80108484_80108485insAA	ENST00000567851.1	+	0	405																											ACCCCTGTCATAAAAAAAAAAA	0.401													2	4	---	---	---	---					
CCDC144B	284047	broad.mit.edu	37	17	18498497	18498498	+	RNA	INS	-	-	A	rs72195768		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:18498497_18498498insA	ENST00000442583.1	-	0	749																				NS(3)|breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(9)|lung(6)|ovary(1)|prostate(2)|skin(2)|urinary_tract(2)	36						CTGCAGGCCTGAAAAAAAAAAA	0.243													2	4	---	---	---	---					
RP11-445F12.1	0	broad.mit.edu	37	17	35239698	35239699	+	RNA	INS	-	-	C	rs140231588	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:35239698_35239699insC	ENST00000528383.1	-	0	98																											GTCACTACACTCCCCACCCCCT	0.475													2	4	---	---	---	---					
TBX4	9496	broad.mit.edu	37	17	59557500	59557501	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:59557500_59557501insC	ENST00000393853.4	+	8	1004_1005	c.841_842insC	c.(841-843)cccfs	p.P281fs	TBX4_ENST00000589449.1_3'UTR|TBX4_ENST00000240335.1_Frame_Shift_Ins_p.P281fs			P57082	TBX4_HUMAN	T-box 4	281					leg morphogenesis|skeletal system morphogenesis	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|endometrium(1)|kidney(2)|large_intestine(6)|liver(2)|lung(15)|ovary(4)|prostate(2)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	40						GAGGCTCATCTCCCCCCAGCTC	0.604													7	132	---	---	---	---					
LOC100294362	100294362	broad.mit.edu	37	17	78376954	78376969	+	RNA	DEL	ATATGTACATATCTAC	ATATGTACATATCTAC	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr17:78376954_78376969delATATGTACATATCTAC	ENST00000575034.1	-	0	190				CTD-2047H16.4_ENST00000572151.1_RNA|CTD-2047H16.4_ENST00000573394.1_RNA	NR_029376.1																						tattatgtagatatgtacatatctacatatgtacat	0.398													2	4	---	---	---	---					
RP11-78F17.1	0	broad.mit.edu	37	18	1044329	1044329	+	RNA	DEL	C	C	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr18:1044329delC	ENST00000580781.1	+	0	306																											gaaattggatcctcatctctc	0.328													2	4	---	---	---	---					
RP11-78F17.1	0	broad.mit.edu	37	18	1046990	1046990	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr18:1046990delT	ENST00000580781.1	+	0	306																											ttgatgggcatttgggttggt	0.363													2	4	---	---	---	---					
LINC00470	56651	broad.mit.edu	37	18	1333208	1333211	+	RNA	DEL	TCTA	TCTA	-	rs71972296		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr18:1333208_1333211delTCTA	ENST00000412816.3	-	0	307																				pancreas(1)	1						atcatctatctctatctatctatc	0.358													2	4	---	---	---	---					
LINC00470	56651	broad.mit.edu	37	18	1344197	1344197	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr18:1344197delG	ENST00000412816.3	-	0	307																				pancreas(1)	1						ttgaggtactggcggacttgc	0.438													2	4	---	---	---	---					
LOC643542	643542	broad.mit.edu	37	18	65311849	65311849	+	RNA	DEL	A	A	-	rs36025025		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr18:65311849delA	ENST00000583687.1	+	0	204					NR_033921.1																						gaccctgtctaaaaaaaaaaa	0.383													2	4	---	---	---	---					
RP11-176N18.2	0	broad.mit.edu	37	18	75239346	75239349	+	RNA	DEL	TGTG	TGTG	-	rs60352649		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr18:75239346_75239349delTGTG	ENST00000583629.1	+	0	497																											tgcatgtgtctgtgtgtgtgtgca	0.505													5	1	---	---	---	---					
CTC-360P9.1	0	broad.mit.edu	37	19	32389793	32389793	+	RNA	DEL	A	A	-	rs72050658		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr19:32389793delA	ENST00000592270.1	-	0	89																											ccaatcccataacttcctttg	0.453													5	1	---	---	---	---					
LIPE-AS1	100996307	broad.mit.edu	37	19	43071310	43071310	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr19:43071310delT	ENST00000594688.1	+	0	1450				LIPE-AS1_ENST00000594624.2_RNA	NR_073179.1																						CTGCTGCTGCttttttttttc	0.532											OREG0025507	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	4	---	---	---	---					
CTB-147C22.9	0	broad.mit.edu	37	19	51497716	51497717	+	RNA	INS	-	-	G	rs144670178	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr19:51497716_51497717insG	ENST00000594512.1	+	0	429																											CTATTTTCTAAAGATCCTAGTG	0.441													5	2	---	---	---	---					
CASC20	101929244	broad.mit.edu	37	20	6464344	6464344	+	RNA	DEL	C	C	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr20:6464344delC	ENST00000415932.1	+	0	218																											GTCTAATATTCCAGATAAATG	0.413													2	4	---	---	---	---					
RP11-103J8.1	0	broad.mit.edu	37	20	10937351	10937352	+	RNA	INS	-	-	A			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr20:10937351_10937352insA	ENST00000605292.1	+	0	439																											AAAGTTCAAAGAAAAAAAGGTA	0.243													2	4	---	---	---	---					
LINC01432	100270679	broad.mit.edu	37	20	22051856	22051871	+	RNA	DEL	TGCTCAACCGGCATTA	TGCTCAACCGGCATTA	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr20:22051856_22051871delTGCTCAACCGGCATTA	ENST00000449427.1	+	0	342					NR_038394.1																						CAGTAAACTGTGCTCAACCGGCATTATCATTATGGA	0.417													2	4	---	---	---	---					
RP4-610C12.1	0	broad.mit.edu	37	20	29583615	29583616	+	RNA	INS	-	-	T	rs149569779		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr20:29583615_29583616insT	ENST00000432067.1	-	0	288																											TCTGACAATGCCAATTTTTTAA	0.213													3	6	---	---	---	---					
RP4-610C12.1	0	broad.mit.edu	37	20	29595455	29595456	+	RNA	INS	-	-	C	rs138176306	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr20:29595455_29595456insC	ENST00000432067.1	-	0	74																											CTCCCAGGTTGCTTGCAATGGC	0.431													2	4	---	---	---	---					
RP1-191L6.2	0	broad.mit.edu	37	20	38754705	38754706	+	RNA	INS	-	-	T	rs72532547		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr20:38754705_38754706insT	ENST00000445278.1	+	0	263																											GAACTGCACTATTTTTTTTTTT	0.396													4	3	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11068974	11068974	+	RNA	DEL	T	T	-	rs147179649		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr21:11068974delT	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		caagcaaagattttttaataa	0.279													3	4	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11069159	11069160	+	RNA	DEL	TA	TA	-	rs4009917	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr21:11069159_11069160delTA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		aataatatattaaaaaaaactt	0.277													3	4	---	---	---	---					
AP003900.6	0	broad.mit.edu	37	21	11171340	11171340	+	RNA	DEL	G	G	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr21:11171340delG	ENST00000603265.1	+	0	54																											ctttatcaaagtcagttgact	0.378													2	4	---	---	---	---					
AP003900.6	0	broad.mit.edu	37	21	11171911	11171912	+	RNA	DEL	AT	AT	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr21:11171911_11171912delAT	ENST00000603265.1	+	0	54																											aagatttcacatgagtggtatc	0.391													3	6	---	---	---	---					
MIR99AHG	388815	broad.mit.edu	37	21	17543911	17543911	+	RNA	DEL	T	T	-	rs142575605		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr21:17543911delT	ENST00000458468.1	+	0	312					NR_027790.1																						ccctgaagccttttttttttt	0.458													2	4	---	---	---	---					
CRYBB2P1	1416	broad.mit.edu	37	22	25852833	25852836	+	RNA	DEL	GCGT	GCGT	-	rs11277931		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr22:25852833_25852836delGCGT	ENST00000354451.2	+	0	123																											gtgtgcgcgcgcgtgtgtgtgtgc	0.559													4	2	---	---	---	---					
LARGE	9215	broad.mit.edu	37	22	33568435	33568436	+	RNA	DEL	CA	CA	-	rs5845070	by1000genomes	TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chr22:33568435_33568436delCA	ENST00000421232.1	-	0	150																											ttcccctgctcactctctctct	0.446													3	4	---	---	---	---					
RP5-964N17.1	0	broad.mit.edu	37	X	112881313	112881313	+	RNA	DEL	T	T	-			TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chrX:112881313delT	ENST00000468762.2	-	0	26																											tacaaaaatattttttttata	0.224													2	4	---	---	---	---					
RP5-1139I1.2	0	broad.mit.edu	37	X	118494580	118494581	+	RNA	INS	-	-	G	rs67326056		TCGA-17-Z005-01A-01W-0746-08	TCGA-17-Z005-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	96b0bb86-6092-47ef-8088-fd0a4f261439	46f2d9fa-8b65-4181-a982-a422cde22423	g.chrX:118494580_118494581insG	ENST00000413240.1	-	0	491																											TGTATGGTGGTGGGGGGGGCAA	0.485													2	4	---	---	---	---					
