Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LRFN5	145581	broad.mit.edu	37	14	42360569	42360569	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:42360569G>T	ENST00000298119.4	+	4	2691	c.1502G>T	c.(1501-1503)aGa>aTa	p.R501I	LRFN5_ENST00000554120.1_Intron|LRFN5_ENST00000554171.1_Intron	NM_152447.3	NP_689660.2	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III domain containing 5	501	Fibronectin type-III.					integral to membrane				breast(1)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(4)|large_intestine(12)|liver(1)|lung(67)|ovary(5)|pancreas(3)|prostate(1)|skin(9)|stomach(1)|upper_aerodigestive_tract(9)|urinary_tract(2)	120			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		ACTGCCACAAGAGTCGTGGGT	0.433000										HNSCC(30;0.082)			22	53					3.7963e-18	5.18182e-18	0.018920	1	0
MRPS23	51649	broad.mit.edu	37	17	55927331	55927331	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:55927331G>C	ENST00000313608.8	-	1	86	c.41C>G	c.(40-42)tCt>tGt	p.S14C	MRPS23_ENST00000578444.1_Missense_Mutation_p.S14C	NM_016070.3	NP_057154.2	Q9Y3D9	RT23_HUMAN	mitochondrial ribosomal protein S23	14					translation	intermediate filament cytoskeleton|mitochondrion|nuclear membrane|ribosome	structural constituent of ribosome			endometrium(2)|large_intestine(1)|lung(2)	5	Breast(9;8.75e-08)					CACACACCGAGAGAAGATGCT	0.662000													2	0					0	0	0.004672	0	0
MYH3	4621	broad.mit.edu	37	17	10541666	10541666	+	Silent	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:10541666G>T	ENST00000583535.1	-	27	3510	c.3423C>A	c.(3421-3423)gcC>gcA	p.A1141A	MYH3_ENST00000226209.7_Silent_p.A1141A	NM_002470.3	NP_002461.2	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle, embryonic	1141					muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(8)|kidney(5)|large_intestine(18)|lung(30)|ovary(4)|pancreas(1)|prostate(4)|skin(2)|upper_aerodigestive_tract(5)|urinary_tract(1)	83						CCAGCTCCCGGGCATAGTCGC	0.642000													7	18					7.03913e-09	8.33112e-09	0.013537	1	0
ANK2	287	broad.mit.edu	37	4	114274827	114274827	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:114274827G>T	ENST00000357077.4	+	38	5106	c.5053G>T	c.(5053-5055)Gat>Tat	p.D1685Y	ANK2_ENST00000264366.6_Missense_Mutation_p.D1652Y|ANK2_ENST00000510275.2_Intron|ANK2_ENST00000394537.3_Intron|ANK2_ENST00000509550.1_Intron|ANK2_ENST00000506722.1_Intron	NM_001148.4	NP_001139.3	Q01484	ANK2_HUMAN	ankyrin 2, neuronal	1652					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding			NS(1)|biliary_tract(1)|breast(9)|central_nervous_system(10)|cervix(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(7)|large_intestine(54)|liver(2)|lung(112)|ovary(8)|pancreas(1)|prostate(7)|skin(11)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(10)	248		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CATACCCCCAGATGAGACACA	0.448000													66	104					2.165e-29	3.13841e-29	0.048971	1	0
PRAMEF12	390999	broad.mit.edu	37	1	12835027	12835027	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:12835027C>A	ENST00000357726.4	+	1	44	c.17C>A	c.(16-18)cCa>cAa	p.P6Q		NM_001080830.1	NP_001074299.1	O95522	PRA12_HUMAN	PRAME family member 12	6										NS(2)|central_nervous_system(1)|cervix(1)|endometrium(2)|large_intestine(3)|lung(9)|ovary(3)|skin(1)|urinary_tract(1)	23	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTCCAGGCCCCACCTAGACTC	0.547000													20	44					1.64293e-13	2.10431e-13	0.018920	1	0
GTDC1	79712	broad.mit.edu	37	2	144728256	144728256	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:144728256C>T	ENST00000409214.1	-	8	1227	c.949G>A	c.(949-951)Gtg>Atg	p.V317M	GTDC1_ENST00000241391.5_Intron|GTDC1_ENST00000409298.1_Missense_Mutation_p.V199M|GTDC1_ENST00000392869.1_Missense_Mutation_p.V317M|GTDC1_ENST00000344850.4_Missense_Mutation_p.V317M|GTDC1_ENST00000463875.2_Missense_Mutation_p.V188M|GTDC1_ENST00000542155.1_Missense_Mutation_p.V317M|GTDC1_ENST00000392867.3_Intron	NM_001006636.3	NP_001006637.1	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	317					biosynthetic process		transferase activity, transferring glycosyl groups			central_nervous_system(1)|endometrium(1)|large_intestine(4)|liver(1)|lung(17)|ovary(1)	25				BRCA - Breast invasive adenocarcinoma(221;0.0914)		AGTACAGACACGTGGAAATTG	0.343000													27	62					0	0	0.034045	0	0
MT-CYB	4519	broad.mit.edu	37	MT	15687	15687	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chrM:15687G>A	ENST00000361789.2	+	1	941	c.941G>A	c.(940-942)aGc>aAc	p.314_314insN						mitochondrially encoded cytochrome b											breast(6)|endometrium(25)|kidney(33)|prostate(1)	65						CAAACAACAAAGCATAATATT	0.458000											OREG0007583	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	5	442					0	0	0.029380	0	0
AZGP1	563	broad.mit.edu	37	7	99569388	99569388	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:99569388C>A	ENST00000411734.1	-	2	314	c.309G>T	c.(307-309)gaG>gaT	p.E103D	AZGP1_ENST00000292401.4_Missense_Mutation_p.E106D			P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc-binding	106					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(6)|ovary(1)|prostate(1)|stomach(1)	16	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					CGTTGTAATACTCCACGATGT	0.532000													28	66					1.08312e-15	1.44674e-15	0.041601	1	0
LCTL	197021	broad.mit.edu	37	15	66850175	66850175	+	Silent	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:66850175G>A	ENST00000341509.5	-	8	938	c.807C>T	c.(805-807)gaC>gaT	p.D269D	LCTL_ENST00000537670.1_Silent_p.D96D	NM_207338.2	NP_997221.2	Q6UWM7	LCTL_HUMAN	lactase-like	269					carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			NS(1)|breast(1)|endometrium(4)|kidney(1)|large_intestine(6)|lung(10)|ovary(2)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	32						GGTTACTAATGTCCACAGGTT	0.517000													59	83					0	0	0.048971	0	0
HSP90AA1	3320	broad.mit.edu	37	14	102552661	102552661	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:102552661T>A	ENST00000334701.7	-	3	702	c.421A>T	c.(421-423)Acg>Tcg	p.T141S	HSP90AA1_ENST00000441629.2_5'UTR|HSP90AA1_ENST00000216281.8_Missense_Mutation_p.T19S	NM_001017963.2	NP_001017963.2	P07900	HS90A_HUMAN	heat shock protein 90kDa alpha (cytosolic), class A member 1	19					axon guidance|cellular chaperone-mediated protein complex assembly|G2/M transition of mitotic cell cycle|nitric oxide metabolic process|positive regulation of nitric oxide biosynthetic process|protein import into mitochondrial outer membrane|protein refolding|regulation of nitric-oxide synthase activity|response to unfolded protein|signal transduction	cytosol|melanosome|plasma membrane	ATP binding|ATPase activity|nitric-oxide synthase regulator activity|protein homodimerization activity|TPR domain binding|unfolded protein binding			breast(1)|central_nervous_system(2)|endometrium(2)|kidney(6)|large_intestine(3)|liver(1)|lung(10)|ovary(2)|prostate(1)	28					Rifabutin(DB00615)	AAGGCGAACGTCTCAACCTCC	0.483000													16	21					0	0	0.028581	0	0
RP11-909M7.3	0	broad.mit.edu	37	14	101441213	101441213	+	RNA	SNP	T	T	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:101441213T>G	ENST00000554693.2	+	0	462				SNORD114-17_ENST00000364699.1_RNA																							AACTCTGAGGTCCAACACAGC	0.378000													35	18					0	0	0.054565	0	0
SLC18A3	6572	broad.mit.edu	37	10	50819198	50819198	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr10:50819198G>T	ENST00000374115.3	+	1	852	c.412G>T	c.(412-414)Gtg>Ttg	p.V138L	CHAT_ENST00000339797.1_Intron	NM_003055.2	NP_003046.2	Q16572	VACHT_HUMAN	solute carrier family 18 (vesicular acetylcholine transporter), member 3	138					neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			endometrium(6)|kidney(2)|large_intestine(8)|liver(1)|lung(20)|ovary(2)|prostate(2)|upper_aerodigestive_tract(2)	43						GCAGCTGCTAGTGAACCCCTT	0.627000													4	92					0.014758	0.0155918	0.014758	1	0
APOB	338	broad.mit.edu	37	2	21225814	21225814	+	Silent	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:21225814G>A	ENST00000233242.1	-	29	12607	c.12480C>T	c.(12478-12480)ggC>ggT	p.G4160G		NM_000384.2	NP_000375.2	P04114	APOB_HUMAN	apolipoprotein B	4160					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			NS(5)|autonomic_ganglia(1)|breast(6)|central_nervous_system(4)|cervix(3)|endometrium(19)|kidney(10)|large_intestine(63)|liver(5)|lung(125)|ovary(16)|pancreas(1)|prostate(5)|skin(31)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(6)	305	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AACTGGCTTGGCCTTCCTGAG	0.493000													17	42					0	0	0.055883	0	0
OPRM1	4988	broad.mit.edu	37	6	154412190	154412190	+	Silent	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:154412190C>T	ENST00000414028.2	+	3	797	c.747C>T	c.(745-747)atC>atT	p.I249I	OPRM1_ENST00000435918.2_Silent_p.I249I|OPRM1_ENST00000524163.1_Silent_p.I249I|OPRM1_ENST00000428397.2_Silent_p.I249I|OPRM1_ENST00000229768.5_Silent_p.I249I|OPRM1_ENST00000522555.1_Silent_p.I149I|OPRM1_ENST00000330432.7_Silent_p.I249I|OPRM1_ENST00000520708.1_Silent_p.I149I|OPRM1_ENST00000522236.1_Silent_p.I149I|OPRM1_ENST00000452687.2_Silent_p.I249I|OPRM1_ENST00000360422.4_Silent_p.I249I|OPRM1_ENST00000419506.2_Silent_p.I249I|OPRM1_ENST00000434900.2_Silent_p.I342I|OPRM1_ENST00000518759.1_Silent_p.I168I|OPRM1_ENST00000337049.4_Silent_p.I249I	NM_001145284.2	NP_001138756.1	P35372	OPRM_HUMAN	opioid receptor, mu 1	249					behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(5)|lung(15)|ovary(1)|skin(3)|upper_aerodigestive_tract(1)	33		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	CAGTGCTCATCATTACCGTGT	0.468000													63	32					0	0	0.048971	0	0
LINC01410	103352539	broad.mit.edu	37	9	66459820	66459820	+	RNA	SNP	G	G	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr9:66459820G>C	ENST00000424345.1	+	0	80																											tttgtccccagtgccttattt	0.353000													5	29					0	0	0.014758	0	0
FBN2	2201	broad.mit.edu	37	5	127641569	127641569	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:127641569G>A	ENST00000508053.1	-	49	6468	c.5494C>T	c.(5494-5496)Cgc>Tgc	p.R1832C	FBN2_ENST00000262464.4_Missense_Mutation_p.R1832C			P35556	FBN2_HUMAN	fibrillin 2	1832	EGF-like 29; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			NS(1)|autonomic_ganglia(1)|biliary_tract(1)|breast(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(37)|liver(1)|lung(89)|ovary(9)|pancreas(2)|prostate(6)|skin(10)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(1)	197		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CATTCACAGCGGAAACTGCCA	0.378000													3	54					0	0	0.009096	0	0
CD163	9332	broad.mit.edu	37	12	7653807	7653807	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:7653807C>A	ENST00000359156.4	-	3	587	c.385G>T	c.(385-387)Gat>Tat	p.D129Y	CD163_ENST00000432237.2_Missense_Mutation_p.D129Y|CD163_ENST00000541972.1_Missense_Mutation_p.D117Y|CD163_ENST00000396620.3_Missense_Mutation_p.D129Y	NM_004244.5	NP_004235.4	Q86VB7	C163A_HUMAN	CD163 molecule	129	SRCR 1.				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			breast(1)|cervix(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(14)|lung(33)|ovary(6)|pancreas(2)|prostate(1)|skin(5)|urinary_tract(4)	76						TGTTTGCAATCCCAAAGAGCT	0.468000													35	302					6.29468e-14	8.17435e-14	0.074837	1	0
POTEG	404785	broad.mit.edu	37	14	19573133	19573133	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:19573133G>A	ENST00000409832.3	+	8	1283	c.1231G>A	c.(1231-1233)Ggt>Agt	p.G411S		NM_001005356.2	NP_001005356.1	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	411										cervix(1)|endometrium(4)|kidney(3)|large_intestine(4)|lung(31)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	47						AAATAAGGGTGGTGATAGAAA	0.328000													18	74					0	0	0.018920	0	0
FPR1	2357	broad.mit.edu	37	19	52250113	52250113	+	Silent	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr19:52250113C>G	ENST00000595042.1	-	3	276	c.135G>C	c.(133-135)ggG>ggC	p.G45G	FPR1_ENST00000304748.4_Silent_p.G45G	NM_001193306.1	NP_001180235.1	P21462	FPR1_HUMAN	formyl peptide receptor 1	45					activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			endometrium(2)|kidney(2)|large_intestine(2)|lung(6)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|stomach(3)	20		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	AGATCACAAGCCCGTTGCCCA	0.537000													30	47					0	0	0.041601	0	0
TMEM206	55248	broad.mit.edu	37	1	212553313	212553313	+	Missense_Mutation	SNP	G	G	A	rs138060998		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:212553313G>A	ENST00000261455.4	-	5	699	c.562C>T	c.(562-564)Cgc>Tgc	p.R188C	TMEM206_ENST00000535273.1_Missense_Mutation_p.R249C	NM_018252.2	NP_060722.2	Q9H813	TM206_HUMAN	transmembrane protein 206	188						integral to membrane				breast(1)|kidney(3)|large_intestine(4)|lung(6)|prostate(1)|skin(2)	17				all cancers(67;0.012)|OV - Ovarian serous cystadenocarcinoma(81;0.0121)|GBM - Glioblastoma multiforme(131;0.0377)|Epithelial(68;0.148)		TTGTTCAGGCGGAACTGGAGG	0.522000													4	215					0	0	0.014758	0	0
IRS4	8471	broad.mit.edu	37	X	107977313	107977313	+	Silent	SNP	A	A	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chrX:107977313A>G	ENST00000372129.2	-	1	2338	c.2262T>C	c.(2260-2262)ccT>ccC	p.P754P		NM_003604.2	NP_003595.1	O14654	IRS4_HUMAN	insulin receptor substrate 4	754	CRK-binding.					plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			NS(1)|breast(2)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(22)|lung(30)|ovary(5)|pancreas(2)|prostate(1)|skin(1)	78						GACTCGGAGCAGGTGGTGGGC	0.478000													30	50					0	0	0.037714	0	0
TMF1	7110	broad.mit.edu	37	3	69097285	69097285	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:69097285T>C	ENST00000543976.1	-	2	817	c.571A>G	c.(571-573)Act>Gct	p.T191A	CTD-2013N24.2_ENST00000595925.1_RNA|CTD-2013N24.2_ENST00000596274.1_RNA|CTD-2013N24.2_ENST00000596732.1_RNA|CTD-2013N24.2_ENST00000596523.1_RNA|TMF1_ENST00000398559.2_Missense_Mutation_p.T191A|CTD-2013N24.2_ENST00000601735.1_RNA|CTD-2013N24.2_ENST00000482368.2_RNA|CTD-2013N24.2_ENST00000597950.1_RNA|CTD-2013N24.2_ENST00000598783.1_RNA	NM_007114.2	NP_009045.2	P82094	TMF1_HUMAN	TATA element modulatory factor 1	191					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Golgi membrane|nucleus	DNA binding|protein binding|transcription cofactor activity			cervix(1)|kidney(1)|large_intestine(4)|lung(13)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	22		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;4.48e-05)|Epithelial(33;0.000274)|LUSC - Lung squamous cell carcinoma(21;0.0123)|KIRC - Kidney renal clear cell carcinoma(39;0.211)|Kidney(39;0.247)		AAACTTACAGTTGGCACCTTC	0.393000													27	34					0	0	0.024334	0	0
S100A4	6275	broad.mit.edu	37	1	153516257	153516257	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:153516257T>C	ENST00000368716.4	-	3	431	c.284A>G	c.(283-285)gAt>gGt	p.D95G	S100A4_ENST00000368715.1_Missense_Mutation_p.D95G|S100A4_ENST00000368714.1_Missense_Mutation_p.D95G|S100A4_ENST00000481009.1_5'UTR|S100A4_ENST00000354332.4_Missense_Mutation_p.D95G	NM_002961.2	NP_002952.1	P26447	S10A4_HUMAN	S100 calcium binding protein A4	95					epithelial to mesenchymal transition|positive regulation of I-kappaB kinase/NF-kappaB cascade	nucleus|perinuclear region of cytoplasm	calcium ion binding|RAGE receptor binding			large_intestine(2)|lung(1)|prostate(1)	4	all_lung(78;5.98e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGGCTGCTTATCTGGGAAGCC	0.527000													68	70					0	0	0.048971	0	0
GJB5	2709	broad.mit.edu	37	1	35223435	35223435	+	Silent	SNP	A	A	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:35223435A>G	ENST00000338513.1	+	2	677	c.504A>G	c.(502-504)ccA>ccG	p.P168P		NM_005268.3	NP_005259.1	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	168					cell communication|epidermis development	connexon complex|integral to membrane				endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(3)|ovary(1)|skin(1)|stomach(1)	10		Myeloproliferative disorder(586;0.0393)				ACGCAGATCCATGTCCCAATA	0.507000													13	26					0	0	0.013537	0	0
WEE2	494551	broad.mit.edu	37	7	141414021	141414021	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:141414021C>T	ENST00000397541.2	+	2	761	c.355C>T	c.(355-357)Cgg>Tgg	p.R119W	WEE2-AS1_ENST00000488785.1_RNA	NM_001105558.1	NP_001099028.1	P0C1S8	WEE2_HUMAN	WEE1 homolog 2 (S. pombe)	119					egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(5)|lung(14)|ovary(1)|prostate(2)|skin(2)|stomach(1)	31	Melanoma(164;0.0171)					CATGCTGAGCCGGTTGGTGAT	0.433000													31	125					0	0	0.069456	0	0
TNIP1	10318	broad.mit.edu	37	5	150439923	150439923	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:150439923C>T	ENST00000389378.2	-	5	979	c.391G>A	c.(391-393)Gag>Aag	p.E131K	TNIP1_ENST00000521591.1_Missense_Mutation_p.E131K|TNIP1_ENST00000315050.7_Missense_Mutation_p.E131K|TNIP1_ENST00000524280.1_Missense_Mutation_p.E131K|TNIP1_ENST00000520931.1_Missense_Mutation_p.E78K|TNIP1_ENST00000523200.1_Missense_Mutation_p.E131K|TNIP1_ENST00000518977.1_Missense_Mutation_p.E131K|TNIP1_ENST00000522226.1_Missense_Mutation_p.E131K|TNIP1_ENST00000523338.1_Missense_Mutation_p.E131K	NM_001252385.1|NM_001252393.1|NM_001258454.1|NM_006058.4	NP_001239314.1|NP_001239322.1|NP_001245383.1|NP_006049.3	Q15025	TNIP1_HUMAN	TNFAIP3 interacting protein 1	131	Interacts with Nef.				defense response|glycoprotein biosynthetic process|negative regulation of viral genome replication|translation	cytoplasm|nucleus	protein binding	p.E131K(1)		NS(1)|breast(2)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|liver(1)|lung(5)|ovary(2)|prostate(2)|skin(3)	23		Medulloblastoma(196;0.0911)|all_hematologic(541;0.207)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCTGCTCCTCAGGAGTGACC	0.582000													13	16					0	0	0.013537	0	0
TVP23C	201158	broad.mit.edu	37	17	15449101	15449101	+	Silent	SNP	G	G	A	rs56034550	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:15449101G>A	ENST00000584811.1	-	5	1683	c.268C>T	c.(268-270)Ctg>Ttg	p.L90L	TVP23C_ENST00000438826.3_Silent_p.L154L|TVP23C_ENST00000518321.1_Silent_p.L154L|TVP23C-CDRT4_ENST00000522212.2_Silent_p.L154L|TVP23C_ENST00000225576.3_Silent_p.L154L|TVP23C_ENST00000519970.1_Silent_p.L68L|TVP23C_ENST00000428082.2_Silent_p.L154L					trans-golgi network vesicle protein 23 homolog C (S. cerevisiae)									p.L154L(6)									ATACTCACCAGCCACTTTACT	0.408000													4	95					0	0	0.009096	0	0
KRT73	319101	broad.mit.edu	37	12	53004610	53004610	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:53004610G>T	ENST00000305748.3	-	7	1154	c.1120C>A	c.(1120-1122)Ctg>Atg	p.L374M	RP11-641A6.2_ENST00000551089.1_RNA|RP11-641A6.2_ENST00000552364.1_RNA	NM_175068.2	NP_778238.1	Q86Y46	K2C73_HUMAN	keratin 73	374	Coil 2.|Rod.					keratin filament	structural molecule activity			NS(1)|breast(1)|endometrium(2)|kidney(1)|large_intestine(9)|lung(22)|ovary(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	44				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCGTCTCCAGGTTGGCACAC	0.642000													10	27					0.00621372	0.0066398	0.058154	1	0
CDH13	1012	broad.mit.edu	37	16	83251006	83251006	+	Silent	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr16:83251006G>A	ENST00000566620.1	+	5	830	c.540G>A	c.(538-540)gtG>gtA	p.V180V	CDH13_ENST00000428848.3_Silent_p.V141V|CDH13_ENST00000569454.1_3'UTR|CDH13_ENST00000268613.10_Silent_p.V227V	NM_001220488.1|NM_001220489.1|NM_001220490.1|NM_001257.4	NP_001207417.1|NP_001207418.1|NP_001207419.1|NP_001248.1	P55290	CAD13_HUMAN	cadherin 13	180	Cadherin 1.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GAAAGGGAGTGGATCAAGAGC	0.458000													29	27					0	0	0.034045	0	0
GLI3	2737	broad.mit.edu	37	7	42004993	42004993	+	Silent	SNP	T	T	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:42004993T>A	ENST00000395925.3	-	15	3762	c.3678A>T	c.(3676-3678)ccA>ccT	p.P1226P	GLI3_ENST00000479210.1_5'UTR	NM_000168.5	NP_000159.3	P10071	GLI3_HUMAN	GLI family zinc finger 3	1226					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(2)|biliary_tract(1)|breast(4)|central_nervous_system(2)|endometrium(12)|kidney(7)|large_intestine(25)|lung(49)|ovary(3)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	112						TCAAGTGCTCTGGGCCACCGT	0.617000									Pallister-Hall syndrome;Greig Cephalopolysyndactyly				20	36					0	0	0.024334	0	0
ANKRD30BP2	149992	broad.mit.edu	37	21	14414844	14414844	+	RNA	SNP	T	T	C	rs148060711	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr21:14414844T>C	ENST00000507941.1	+	0	95																											ACTGGGCCTGTGCCAATGGCC	0.433000													4	52					0	0	0.009096	0	0
FBXL14	144699	broad.mit.edu	37	12	1702092	1702092	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:1702092G>A	ENST00000339235.3	-	1	1239	c.1141C>T	c.(1141-1143)Ccg>Tcg	p.P381S	FBXL14_ENST00000543278.1_5'UTR|WNT5B_ENST00000537031.1_Intron	NM_152441.2	NP_689654.1	Q8N1E6	FXL14_HUMAN	F-box and leucine-rich repeat protein 14	381						cytoplasm				endometrium(1)|kidney(1)|large_intestine(2)|lung(2)|ovary(1)|prostate(1)	8	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00115)			TTGAGGCACGGCAGCTGCGTG	0.632000													7	17					0	0	0.047766	0	0
MTTP	4547	broad.mit.edu	37	4	100532530	100532530	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:100532530T>C	ENST00000457717.1	+	15	2165	c.1909T>C	c.(1909-1911)Tac>Cac	p.Y637H	RP11-766F14.1_ENST00000508578.1_RNA|MTTP_ENST00000511045.1_Missense_Mutation_p.Y664H|MTTP_ENST00000265517.5_Missense_Mutation_p.Y637H	NM_000253.2	NP_000244.2	P55157	MTP_HUMAN	microsomal triglyceride transfer protein	637	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			breast(3)|central_nervous_system(2)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(14)|lung(19)|ovary(4)|prostate(5)|skin(1)|urinary_tract(1)	57				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	AGACATTCTCTACTCGGGTTC	0.453000													39	117					0	0	0.025465	0	0
IL1RL1	9173	broad.mit.edu	37	2	102965694	102965694	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:102965694C>A	ENST00000233954.1	+	10	1544	c.1273C>A	c.(1273-1275)Cta>Ata	p.L425I		NM_016232.4	NP_057316.3	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1	425	TIR.				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			NS(1)|central_nervous_system(1)|kidney(1)|large_intestine(3)|lung(5)|ovary(1)|skin(3)|urinary_tract(1)	16						GAGAGATATGCTACCTGGAGA	0.413000													42	47					1.48734e-19	2.09122e-19	0.045515	1	0
APBA2	321	broad.mit.edu	37	15	29346296	29346296	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:29346296G>T	ENST00000558402.1	+	5	808	c.209G>T	c.(208-210)gGg>gTg	p.G70V	APBA2_ENST00000411764.1_Missense_Mutation_p.G70V|APBA2_ENST00000561069.1_Missense_Mutation_p.G70V|APBA2_ENST00000558330.1_Missense_Mutation_p.G70V|APBA2_ENST00000558259.1_Missense_Mutation_p.G70V			Q99767	APBA2_HUMAN	amyloid beta (A4) precursor protein-binding, family A, member 2	70					nervous system development|protein transport		protein binding	p.G70V(1)		NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(7)|liver(2)|lung(33)|stomach(1)|urinary_tract(1)	59		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		AGCCCCGATGGGGACTCCAGC	0.642000													21	46					4.54149e-19	6.2908e-19	0.069288	1	0
UNC93A	54346	broad.mit.edu	37	6	167719510	167719510	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:167719510C>A	ENST00000230256.3	+	6	1123	c.948C>A	c.(946-948)taC>taA	p.Y316*	UNC93A_ENST00000366829.2_Nonsense_Mutation_p.Y274*	NM_018974.3	NP_061847.2	Q86WB7	UN93A_HUMAN	unc-93 homolog A (C. elegans)	316						integral to membrane|plasma membrane				breast(2)|central_nervous_system(2)|endometrium(2)|kidney(2)|large_intestine(7)|lung(20)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)	40		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		TCTCGCAGTACACGGGCAGGG	0.577000													40	28					2.42038e-35	3.53603e-35	0.030466	1	0
WDR64	128025	broad.mit.edu	37	1	241959664	241959664	+	Missense_Mutation	SNP	C	C	A	rs142269497		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:241959664C>A	ENST00000366552.2	+	26	3361	c.3154C>A	c.(3154-3156)Cgt>Agt	p.R1052S	WDR64_ENST00000437684.2_Missense_Mutation_p.R885S	NM_144625.4	NP_653226.4	B1ANS9	WDR64_HUMAN	WD repeat domain 64	1052										breast(3)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(10)|lung(17)|prostate(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	44	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			TCATGTTCAACGTGAAAAAGT	0.378000													8	53					0.0381472	0.0398521	0.038147	1	0
OR2B2	81697	broad.mit.edu	37	6	27879546	27879546	+	Silent	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:27879546C>T	ENST00000303324.2	-	1	628	c.552G>A	c.(550-552)ctG>ctA	p.L184L		NM_033057.2	NP_149046.2	Q9GZK3	OR2B2_HUMAN	olfactory receptor, family 2, subfamily B, member 2	184					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			cervix(1)|endometrium(4)|large_intestine(5)|lung(10)|prostate(1)|urinary_tract(1)	22						ACAACTTGAGCAGAGCAGGGA	0.443000													107	117					0	0	0.048971	0	0
MTR	4548	broad.mit.edu	37	1	236988655	236988655	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:236988655G>T	ENST00000366577.5	+	10	1277	c.883G>T	c.(883-885)Ggt>Tgt	p.G295C	MTR_ENST00000535889.1_Missense_Mutation_p.G295C	NM_000254.2	NP_000245.2	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine methyltransferase	295	Hcy-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			breast(4)|central_nervous_system(1)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(8)|lung(30)|ovary(1)|pancreas(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	67	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	CAACACCTTTGGTGACTATGA	0.363000													84	241					3.01496e-42	4.43935e-42	0.048971	1	0
OTOGL	283310	broad.mit.edu	37	12	80633155	80633155	+	Silent	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:80633155C>T	ENST00000458043.2	+	10	967	c.961C>T	c.(961-963)Ctg>Ttg	p.L321L	OTOGL_ENST00000547103.1_Silent_p.L321L	NM_173591.3	NP_775862.3			otogelin-like											breast(1)|endometrium(3)|kidney(2)|large_intestine(2)|lung(14)|prostate(1)	23						GTTTCCTTTTCTGAGCTGCCA	0.358000													65	39					0	0	0.048971	0	0
LIPK	643414	broad.mit.edu	37	10	90512289	90512289	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr10:90512289T>C	ENST00000404190.1	+	9	976	c.976T>C	c.(976-978)Tac>Cac	p.Y326H		NM_001080518.1	NP_001073987.1	Q5VXJ0	LIPK_HUMAN	lipase, family member K	326					lipid catabolic process	extracellular region	hydrolase activity			endometrium(1)|kidney(1)|large_intestine(1)|lung(7)|ovary(2)	12		Colorectal(252;0.0381)		Colorectal(12;7.03e-05)|COAD - Colon adenocarcinoma(12;8.33e-05)		ACCTCCTTTATACAACATTAC	0.348000													5	2					0	0	0.014758	0	0
BPIFA2	140683	broad.mit.edu	37	20	31760818	31760818	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:31760818G>A	ENST00000253362.2	+	3	384	c.238G>A	c.(238-240)Gaa>Aaa	p.E80K	BPIFA2_ENST00000354932.5_Missense_Mutation_p.E80K			Q96DR5	SPLC2_HUMAN	BPI fold containing family A, member 2	80						extracellular region	lipid binding										GAAGGCCCAGGAAGCTGAGAA	0.478000													16	12					0	0	0.028581	0	0
TP53	7157	broad.mit.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:7578190T>C	ENST00000420246.2	-	6	791	c.659A>G	c.(658-660)tAt>tGt	p.Y220C	TP53_ENST00000445888.2_Missense_Mutation_p.Y220C|TP53_ENST00000574684.1_Intron|TP53_ENST00000413465.2_Missense_Mutation_p.Y220C|TP53_ENST00000269305.4_Missense_Mutation_p.Y220C|TP53_ENST00000455263.2_Missense_Mutation_p.Y220C|TP53_ENST00000359597.4_Missense_Mutation_p.Y220C	NM_001126114.2|NM_001276696.1	NP_001119586.1|NP_001263625.1	P04637	P53_HUMAN	tumor protein p53	220	Interaction with AXIN1 (By similarity).|Interaction with HIPK1 (By similarity).|Required for interaction with FBXO42.		Y -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|Y -> D (in sporadic cancers; somatic mutation).|Y -> F (in a sporadic cancer; somatic mutation).|Y -> H (in sporadic cancers; somatic mutation).|Y -> N (in sporadic cancers; somatic mutation).|Y -> S (in a brain tumor with no family history; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Y220C(278)|p.Y127C(24)|p.Y220S(12)|p.?(11)|p.0?(8)|p.D208fs*1(1)|p.Y220_P223delYEPP(1)|p.V218_E224delVPYEPPE(1)|p.V218_E221delVPYE(1)|p.Y127S(1)|p.V218_Y220delVPY(1)|p.Y220fs*25(1)|p.V216_Y220delVVVPY(1)|p.Y220fs*2(1)|p.V218fs*26(1)		NS(16)|adrenal_gland(37)|autonomic_ganglia(16)|biliary_tract(273)|bone(108)|breast(2530)|central_nervous_system(1264)|cervix(68)|endometrium(223)|eye(24)|fallopian_tube(1)|gastrointestinal_tract_(site_indeterminate)(1)|genital_tract(16)|haematopoietic_and_lymphoid_tissue(1301)|kidney(96)|large_intestine(5124)|liver(897)|lung(2388)|meninges(5)|oesophagus(1473)|ovary(1659)|pancreas(452)|penis(10)|peritoneum(33)|pituitary(4)|placenta(1)|pleura(3)|prostate(235)|salivary_gland(43)|skin(791)|small_intestine(14)|soft_tissue(220)|stomach(1158)|testis(11)|thymus(21)|thyroid(54)|upper_aerodigestive_tract(2271)|urinary_tract(1259)|vagina(6)|vulva(79)	24185		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGGCGGCTCATAGGGCACCAC	0.557000		111	"""Mis, N, F"""		"""breast, colorectal, lung, sarcoma, adrenocortical, glioma, multiple other tumour types"""	"""breast, sarcoma, adrenocortical carcinoma, glioma, multiple other tumour types"""		Other conserved DNA damage response genes	Osteosarcoma, Familial Clustering of;Li-Fraumeni syndrome;Hereditary Breast-Ovarian Cancer, non-BRCA1/2;Hereditary Adrenocortical Cancer;Endometrial Cancer, Familial Clustering of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			26	24					0	0	0.024334	0	0
FCRL2	79368	broad.mit.edu	37	1	157716540	157716540	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:157716540C>A	ENST00000361516.3	-	12	1561	c.1513G>T	c.(1513-1515)Gtg>Ttg	p.V505L	FCRL2_ENST00000368181.4_Missense_Mutation_p.V199L|FCRL2_ENST00000392274.3_Silent_p.L444L	NM_030764.3	NP_110391.2	Q96LA5	FCRL2_HUMAN	Fc receptor-like 2	505					cell-cell signaling	integral to membrane|plasma membrane|soluble fraction	receptor activity|SH3/SH2 adaptor activity			central_nervous_system(2)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(7)|lung(29)|ovary(1)|pancreas(1)|prostate(3)|skin(2)	51	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			GATTTCTTCACAGAAGAGTAG	0.403000													10	72					1.76689e-08	2.06506e-08	0.058154	1	0
IK	3550	broad.mit.edu	37	5	140037231	140037231	+	Silent	SNP	T	T	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:140037231T>G	ENST00000417647.2	+	10	1033	c.894T>G	c.(892-894)ctT>ctG	p.L298L		NM_006083.3	NP_006074.2	Q13123	RED_HUMAN	IK cytokine, down-regulator of HLA II	298					cell-cell signaling|immune response	extracellular space|nucleus|soluble fraction				large_intestine(1)	1		all_hematologic(541;4.8e-07)|all_lung(500;0.000434)|Lung NSC(810;0.00161)|Breast(839;0.128)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAAGAAGCTTAAGAAGAAGG	0.483000													42	51					0	0	0.036044	0	0
LCE1B	353132	broad.mit.edu	37	1	152785173	152785173	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:152785173G>T	ENST00000360090.3	+	1	727	c.251G>T	c.(250-252)aGg>aTg	p.R84M		NM_178349.1	NP_848126.1	Q5T7P3	LCE1B_HUMAN	late cornified envelope 1B	84	Gly-rich.				keratinization					breast(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(5)|skin(2)	18	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGGCGCCGTAGGTCCCACTGC	0.687000													60	31					2.01309e-51	3.03587e-51	0.048971	1	0
PKIB	5570	broad.mit.edu	37	6	123022604	123022604	+	Translation_Start_Site	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:123022604C>A	ENST00000258014.3	+	0	131				PKIB_ENST00000368448.1_Intron|PKIB_ENST00000392491.2_Intron|PKIB_ENST00000368452.2_Intron|PKIB_ENST00000392490.1_Intron	NM_001270395.1	NP_001257324.1	Q9C010	IPKB_HUMAN	protein kinase (cAMP-dependent, catalytic) inhibitor beta								cAMP-dependent protein kinase inhibitor activity			large_intestine(3)|lung(1)	4				GBM - Glioblastoma multiforme(226;0.164)		TCAGAGATCACCTGCCAAACA	0.458000													9	28					5.4927e-09	6.54226e-09	0.047766	1	0
USP29	57663	broad.mit.edu	37	19	57640645	57640645	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr19:57640645A>G	ENST00000254181.4	+	4	1056	c.602A>G	c.(601-603)aAa>aGa	p.K201R	USP29_ENST00000598197.1_Missense_Mutation_p.K201R	NM_020903.2	NP_065954.1	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	201					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			breast(3)|endometrium(4)|kidney(3)|large_intestine(15)|lung(47)|ovary(2)|pancreas(1)|prostate(2)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	85		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GATTCCTTGAAATATATACAA	0.358000													15	40					0	0	0.043863	0	0
USP33	23032	broad.mit.edu	37	1	78187556	78187556	+	Silent	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:78187556T>C	ENST00000370793.1	-	15	2056	c.1710A>G	c.(1708-1710)caA>caG	p.Q570Q	USP33_ENST00000370792.3_Silent_p.Q562Q|USP33_ENST00000357428.1_Silent_p.Q570Q|USP33_ENST00000370794.3_Silent_p.Q539Q	NM_015017.4	NP_055832.3	Q8TEY7	UBP33_HUMAN	ubiquitin specific peptidase 33	570					axon guidance|cell migration|endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|VCB complex	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			breast(1)|central_nervous_system(2)|endometrium(4)|kidney(4)|large_intestine(10)|lung(19)|ovary(1)|prostate(2)|urinary_tract(1)	44						CAAGACAATCTTGCAAGGTTA	0.373000													11	25					0	0	0.013537	0	0
GJB5	2709	broad.mit.edu	37	1	35223718	35223718	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:35223718C>T	ENST00000338513.1	+	2	960	c.787C>T	c.(787-789)Cgc>Tgc	p.R263C		NM_005268.3	NP_005259.1	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	263					cell communication|epidermis development	connexon complex|integral to membrane				endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(3)|ovary(1)|skin(1)|stomach(1)	10		Myeloproliferative disorder(586;0.0393)				CTTACCAGACCGCCCCCGAGA	0.572000													15	25					0	0	0.024245	0	0
SERAC1	84947	broad.mit.edu	37	6	158549153	158549153	+	Silent	SNP	A	A	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:158549153A>G	ENST00000367102.2	-	10	1143	c.1002T>C	c.(1000-1002)tcT>tcC	p.S334S	SERAC1_ENST00000367104.3_Silent_p.S334S|SERAC1_ENST00000367101.1_Silent_p.S334S			Q96JX3	SRAC1_HUMAN	serine active site containing 1	334					GPI anchor metabolic process|intracellular protein transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	binding|hydrolase activity, acting on ester bonds			endometrium(1)|kidney(2)|large_intestine(6)|lung(4)|prostate(1)|upper_aerodigestive_tract(1)	15		Breast(66;0.00519)|Ovarian(120;0.123)|Prostate(117;0.178)		OV - Ovarian serous cystadenocarcinoma(65;1.37e-18)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)		AGCGAACTATAGAAGAATGAA	0.353000													32	25					0	0	0.059317	0	0
OR5D18	219438	broad.mit.edu	37	11	55587141	55587141	+	Silent	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:55587141G>T	ENST00000333976.4	+	1	56	c.36G>T	c.(34-36)acG>acT	p.T12T		NM_001001952.1	NP_001001952.1	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D, member 18	12					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(2)|breast(1)|endometrium(3)|large_intestine(6)|lung(33)|ovary(1)|prostate(3)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	55		all_epithelial(135;0.208)				GTGGGACCACGTTCACCCTCT	0.428000													59	37					1.12612e-26	1.61988e-26	0.048971	1	0
DGKD	8527	broad.mit.edu	37	2	234363425	234363425	+	Missense_Mutation	SNP	A	A	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:234363425A>C	ENST00000264057.2	+	19	2293	c.2281A>C	c.(2281-2283)Aaa>Caa	p.K761Q	DGKD_ENST00000409813.3_Missense_Mutation_p.K717Q	NM_152879.2	NP_690618.2	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa	761					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|endometrium(4)|kidney(1)|large_intestine(13)|lung(15)|ovary(1)|pancreas(1)|skin(1)	38		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	TTACACGGAGAAATGTGTCAT	0.448000													9	33					0	0	0.047766	0	0
CHGB	1114	broad.mit.edu	37	20	5903866	5903866	+	Nonsense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:5903866G>A	ENST00000378961.4	+	4	1280	c.1076G>A	c.(1075-1077)tGg>tAg	p.W359*		NM_001819.2	NP_001810.2	P05060	SCG1_HUMAN	chromogranin B (secretogranin 1)	359						extracellular region	hormone activity			breast(7)|kidney(2)|large_intestine(8)|lung(19)|ovary(1)|pancreas(2)|skin(5)|stomach(2)|upper_aerodigestive_tract(1)	47						GACCTGGAGTGGGAGCGCTAT	0.527000													15	160					0	0	0.024245	0	0
ABHD17B	51104	broad.mit.edu	37	9	74481843	74481843	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr9:74481843C>A	ENST00000333421.6	-	4	838	c.727G>T	c.(727-729)Ggc>Tgc	p.G243C	ABHD17B_ENST00000377041.2_Missense_Mutation_p.G243C	NM_001025780.1	NP_001020951.1			abhydrolase domain containing 17B																		AATGCGAGGCCATGTGAAAAG	0.433000													4	16					0.0215528	0.0226425	0.021553	1	0
NUP37	79023	broad.mit.edu	37	12	102512215	102512215	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:102512215C>A	ENST00000552283.1	-	2	221	c.82G>T	c.(82-84)Gag>Tag	p.E28*	NUP37_ENST00000543021.1_5'UTR|NUP37_ENST00000251074.1_Nonsense_Mutation_p.E28*			Q8NFH4	NUP37_HUMAN	nucleoporin 37kDa	28					carbohydrate metabolic process|cell division|chromosome segregation|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	protein binding			endometrium(3)|large_intestine(3)|lung(10)|ovary(1)	17						TCCCCATTCTCAAAGGGATTA	0.398000													45	32					3.05275e-18	4.19753e-18	0.045515	1	0
KMT2C	58508	broad.mit.edu	37	7	151945107	151945107	+	Silent	SNP	A	A	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:151945107A>T	ENST00000355193.2	-	14	2630	c.2412T>A	c.(2410-2412)ctT>ctA	p.L804L	KMT2C_ENST00000262189.6_Silent_p.L804L					lysine (K)-specific methyltransferase 2C																		CAGAGGAACTAAGAGCTGAAG	0.438000													19	395					0	0	0.049695	0	0
GPR65	8477	broad.mit.edu	37	14	88477857	88477857	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:88477857G>C	ENST00000267549.3	+	2	1224	c.666G>C	c.(664-666)aaG>aaC	p.K222N	RP11-300J18.2_ENST00000554433.1_RNA	NM_003608.3	NP_003599.2	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	222					actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(8)|prostate(1)	16						AGGAAAAGAAGAGAATCATAA	0.428000													33	28					0	0	0.045705	0	0
EEPD1	80820	broad.mit.edu	37	7	36327259	36327259	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:36327259C>G	ENST00000242108.4	+	6	1906	c.1188C>G	c.(1186-1188)caC>caG	p.H396Q	EEPD1_ENST00000534978.1_Missense_Mutation_p.H396Q	NM_030636.2	NP_085139.2	Q7L9B9	EEPD1_HUMAN	endonuclease/exonuclease/phosphatase family domain containing 1	396					DNA repair		DNA binding			endometrium(2)|large_intestine(3)|lung(10)|ovary(1)|pancreas(1)|skin(1)	18						TGGGAAGTCACGACCTGACCC	0.532000													7	97					0	0	0.029380	0	0
SLC22A17	51310	broad.mit.edu	37	14	23817863	23817863	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:23817863G>A	ENST00000354772.3	-	5	1047	c.544C>T	c.(544-546)Cca>Tca	p.P182S	SLC22A17_ENST00000206544.8_Missense_Mutation_p.P182S|SLC22A17_ENST00000397267.1_Missense_Mutation_p.P182S|SLC22A17_ENST00000397260.3_Missense_Mutation_p.P71S|SLC22A17_ENST00000474057.1_Intron	NM_016609.3	NP_057693.3	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17	182					siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity			breast(1)|cervix(1)|endometrium(1)|large_intestine(3)|lung(3)|ovary(1)|pancreas(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	15	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		CTCTGGGTTGGGTCGCACAGC	0.617000													11	21					0	0	0.016723	0	0
CENPA	1058	broad.mit.edu	37	2	27016112	27016112	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:27016112C>T	ENST00000335756.4	+	4	588	c.388C>T	c.(388-390)Cgg>Tgg	p.R130W	CENPA_ENST00000475662.1_3'UTR|CENPA_ENST00000233505.8_Missense_Mutation_p.R104W	NM_001809.3	NP_001800.1	P49450	CENPA_HUMAN	centromere protein A	130	H3-like.				CenH3-containing nucleosome assembly at centromere|establishment of mitotic spindle orientation|interspecies interaction between organisms|kinetochore assembly|mitotic prometaphase|protein localization to chromosome, centromeric region	condensed nuclear chromosome kinetochore|cytosol|nucleoplasm|nucleosome	chromatin binding|DNA binding|protein binding			endometrium(1)|large_intestine(3)|lung(3)|urinary_tract(1)	8	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCAACTGGCCCGGAGGATCCG	0.557000													22	55					0	0	0.024334	0	0
PKP2	5318	broad.mit.edu	37	12	32974305	32974305	+	Silent	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:32974305C>A	ENST00000340811.4	-	9	2106	c.1998G>T	c.(1996-1998)acG>acT	p.T666T	PKP2_ENST00000070846.6_Silent_p.T710T	NM_001005242.2	NP_001005242.2	Q99959	PKP2_HUMAN	plakophilin 2	710					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			NS(1)|breast(2)|endometrium(1)|kidney(9)|large_intestine(8)|lung(21)|ovary(1)|pancreas(2)|prostate(2)|skin(2)|urinary_tract(1)	50	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CACTTCCGGCCGTGAGGTTCT	0.428000													14	6					7.93312e-07	8.93671e-07	0.020292	1	0
DBR1	51163	broad.mit.edu	37	3	137886025	137886025	+	Silent	SNP	T	T	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:137886025T>A	ENST00000260803.4	-	5	765	c.612A>T	c.(610-612)acA>acT	p.T204T	DBR1_ENST00000505015.2_5'UTR	NM_016216.3	NP_057300.2	Q9UK59	DBR1_HUMAN	debranching RNA lariats 1	204						nucleus	metal ion binding|RNA lariat debranching enzyme activity			NS(1)|kidney(1)|large_intestine(4)|lung(8)|skin(1)	15						GACTTCCTAATGTGTTATTTT	0.393000													21	14					0	0	0.055883	0	0
ROBO4	54538	broad.mit.edu	37	11	124757359	124757359	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:124757359A>T	ENST00000306534.3	-	14	2578	c.2093T>A	c.(2092-2094)cTg>cAg	p.L698Q	RP11-664I21.5_ENST00000524453.1_RNA|ROBO4_ENST00000533054.1_Missense_Mutation_p.L553Q	NM_019055.5	NP_061928.4	Q8WZ75	ROBO4_HUMAN	roundabout, axon guidance receptor, homolog 4 (Drosophila)	698					angiogenesis|cell differentiation	integral to membrane	receptor activity			NS(2)|breast(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(11)|lung(42)|ovary(1)|prostate(4)|skin(5)|urinary_tract(3)	76	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		TTTCGGTCCCAGGGCCCGCCA	0.592000													11	31					0	0	0.010729	0	0
DNAH11	8701	broad.mit.edu	37	7	21934331	21934331	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:21934331T>A	ENST00000328843.6	+	79	12893	c.12862T>A	c.(12862-12864)Tat>Aat	p.Y4288N	DNAH11_ENST00000409508.3_Missense_Mutation_p.Y4281N			Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4288					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			NS(1)|autonomic_ganglia(1)|breast(13)|central_nervous_system(3)|cervix(4)|endometrium(18)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(50)|lung(101)|ovary(10)|pancreas(4)|prostate(7)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	230						TAGAAGCCCATATGTTCTTGT	0.358000									Kartagener syndrome				51	61					0	0	0.048971	0	0
ZAN	7455	broad.mit.edu	37	7	100363097	100363097	+	RNA	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:100363097C>A	ENST00000542585.1	+	0	4538				ZAN_ENST00000443370.1_RNA|ZAN_ENST00000348028.3_RNA|ZAN_ENST00000421100.1_RNA|ZAN_ENST00000546213.1_RNA|ZAN_ENST00000538115.1_RNA|ZAN_ENST00000546292.1_RNA|ZAN_ENST00000449052.1_RNA|ZAN_ENST00000427578.1_RNA|ZAN_ENST00000349350.6_RNA	NM_003386.1	NP_003377.1	Q9Y493	ZAN_HUMAN	zonadhesin (gene/pseudogene)						binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				NS(2)|breast(3)|central_nervous_system(3)|endometrium(21)|kidney(6)|large_intestine(18)|lung(60)|ovary(4)|pancreas(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)	139	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TGAATGCAATCCGGGCTTCGT	0.612000													3	14					0.004672	0.00502106	0.004672	1	0
GPR112	139378	broad.mit.edu	37	X	135485478	135485478	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chrX:135485478C>G	ENST00000394143.1	+	22	8942	c.8651C>G	c.(8650-8652)cCg>cGg	p.P2884R	GPR112_ENST00000412101.1_Missense_Mutation_p.P2679R|GPR112_ENST00000287534.4_Missense_Mutation_p.P2637R|GPR112_ENST00000370652.1_Missense_Mutation_p.P2884R|GPR112_ENST00000394141.1_Missense_Mutation_p.P2679R	NM_153834.3	NP_722576.3	Q8IZF6	GP112_HUMAN	G protein-coupled receptor 112	2884					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			NS(2)|breast(13)|central_nervous_system(2)|cervix(3)|endometrium(17)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(33)|lung(97)|ovary(5)|pancreas(2)|prostate(4)|skin(10)|upper_aerodigestive_tract(1)|urinary_tract(2)	199	Acute lymphoblastic leukemia(192;0.000127)					CCAACAACTCCGTTGTAAGTA	0.502000													15	23					0	0	0.033300	0	0
LRRC66	339977	broad.mit.edu	37	4	52860966	52860966	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:52860966C>A	ENST00000343457.3	-	4	2228	c.2222G>T	c.(2221-2223)gGg>gTg	p.G741V		NM_001024611.1	NP_001019782.1	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	741						integral to membrane				central_nervous_system(1)|endometrium(9)|kidney(1)|large_intestine(8)|lung(34)|ovary(1)|pancreas(1)|prostate(2)|skin(1)	58						CTTGCTTGCCCCTGAGCTCTC	0.493000													45	97					6.31075e-24	9.00848e-24	0.048971	1	0
OR5D18	219438	broad.mit.edu	37	11	55587801	55587801	+	Silent	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:55587801C>T	ENST00000333976.4	+	1	716	c.696C>T	c.(694-696)gtC>gtT	p.V232V		NM_001001952.1	NP_001001952.1	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D, member 18	232					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V232V(1)		NS(2)|breast(1)|endometrium(3)|large_intestine(6)|lung(33)|ovary(1)|prostate(3)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	55		all_epithelial(135;0.208)				TGCGTTCAGTCAGTGGGCGCC	0.493000													72	38					0	0	0.048971	0	0
OR52E8	390079	broad.mit.edu	37	11	5878565	5878565	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:5878565G>T	ENST00000537935.1	-	1	399	c.368C>A	c.(367-369)gCc>gAc	p.A123D	TRIM5_ENST00000380027.1_Intron	NM_001005168.1	NP_001005168.1	Q6IFG1	O52E8_HUMAN	olfactory receptor, family 52, subfamily E, member 8	123					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(1)|kidney(2)|large_intestine(3)|lung(10)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	20		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.114)		Epithelial(150;2.37e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAAGGCCATGGCCACCAACAC	0.458000													25	245					4.87955e-14	6.38096e-14	0.027356	1	0
TMCO4	255104	broad.mit.edu	37	1	20097886	20097886	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:20097886C>A	ENST00000294543.6	-	5	510	c.269G>T	c.(268-270)gGc>gTc	p.G90V	TMCO4_ENST00000375127.1_Missense_Mutation_p.G90V|TMCO4_ENST00000375122.2_Missense_Mutation_p.G90V	NM_181719.4	NP_859070.3	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	90						integral to membrane				biliary_tract(1)|breast(2)|endometrium(2)|kidney(1)|lung(11)|skin(1)|upper_aerodigestive_tract(1)	19		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		ACCTCCCAGGCCGCTCGCAAA	0.537000													8	43					5.18039e-06	5.8008e-06	0.038147	1	0
OR10G4	390264	broad.mit.edu	37	11	123886970	123886970	+	Nonsense_Mutation	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:123886970C>G	ENST00000320891.4	+	1	689	c.689C>G	c.(688-690)tCa>tGa	p.S230*		NM_001004462.1	NP_001004462.1	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G, member 4	230					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			NS(1)|central_nervous_system(1)|endometrium(2)|kidney(4)|large_intestine(8)|lung(19)|ovary(1)|prostate(1)|skin(4)|stomach(6)|upper_aerodigestive_tract(1)	48		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		ATCCGCACCTCAGATGGGAGG	0.532000													41	37					0	0	0.042209	0	0
ADGRG6	57211	broad.mit.edu	37	6	142689014	142689014	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:142689014C>A	ENST00000230173.6	+	3	888	c.412C>A	c.(412-414)Cag>Aag	p.Q138K	GPR126_ENST00000367608.2_Missense_Mutation_p.Q138K|GPR126_ENST00000296932.8_Missense_Mutation_p.Q138K|GPR126_ENST00000367609.3_Missense_Mutation_p.Q138K|GPR126_ENST00000545477.1_3'UTR	NM_020455.5	NP_065188.4	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126	138	CUB.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			cervix(1)|endometrium(1)|kidney(3)|large_intestine(12)|lung(10)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(3)	36	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		CTTTAGCATCCAGAAGAAAGG	0.413000													11	74					2.61681e-11	3.19833e-11	0.020292	1	0
CHGB	1114	broad.mit.edu	37	20	5903748	5903748	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:5903748A>T	ENST00000378961.4	+	4	1162	c.958A>T	c.(958-960)Agt>Tgt	p.S320C		NM_001819.2	NP_001810.2	P05060	SCG1_HUMAN	chromogranin B (secretogranin 1)	320						extracellular region	hormone activity			breast(7)|kidney(2)|large_intestine(8)|lung(19)|ovary(1)|pancreas(2)|skin(5)|stomach(2)|upper_aerodigestive_tract(1)	47						CAGCATGGCCAGTTTAGGGGA	0.542000													35	56					0	0	0.074837	0	0
ZNF202	7753	broad.mit.edu	37	11	123598271	123598271	+	Nonsense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:123598271G>A	ENST00000336139.4	-	7	1227	c.865C>T	c.(865-867)Cag>Tag	p.Q289*	ZNF202_ENST00000529691.1_Nonsense_Mutation_p.Q289*|ZNF202_ENST00000530393.1_Nonsense_Mutation_p.Q289*			O95125	ZN202_HUMAN	zinc finger protein 202	289	KRAB.				lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			endometrium(4)|kidney(1)|large_intestine(5)|lung(17)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	30		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.03)		TCTCTAACCTGGGAGATCTCA	0.483000													54	22					0	0	0.048971	0	0
CHAT	1103	broad.mit.edu	37	10	50827817	50827817	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr10:50827817C>G	ENST00000395562.2	+	4	657	c.188C>G	c.(187-189)aCg>aGg	p.T63R	CHAT_ENST00000339797.1_Missense_Mutation_p.T27R|CHAT_ENST00000337653.2_Missense_Mutation_p.T145R|CHAT_ENST00000460699.1_3'UTR|CHAT_ENST00000351556.3_Missense_Mutation_p.T27R|CHAT_ENST00000455728.2_Missense_Mutation_p.T27R|CHAT_ENST00000395559.2_Missense_Mutation_p.T27R	NM_001142933.1|NM_001142934.1	NP_001136405.1|NP_001136406.1	P28329	CLAT_HUMAN	choline O-acetyltransferase	145					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)|endometrium(2)|kidney(2)|large_intestine(11)|lung(34)|prostate(3)|urinary_tract(1)	56		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	ACCCTGGCCACGTACCTGCAG	0.627000													5	11					0	0	0.021553	0	0
MRGPRF	116535	broad.mit.edu	37	11	68773708	68773708	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:68773708C>T	ENST00000309099.6	-	3	452	c.70G>A	c.(70-72)Gcc>Acc	p.A24T	MRGPRF_ENST00000441623.1_Missense_Mutation_p.A24T	NM_145015.4	NP_659452.3	Q96AM1	MRGRF_HUMAN	MAS-related GPR, member F	24						integral to membrane|plasma membrane	G-protein coupled receptor activity			endometrium(3)|lung(4)	7			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			AGTTCCGGGGCCTCGCTCAGG	0.667000													14	5					0	0	0.016723	0	0
KIAA0020	9933	broad.mit.edu	37	9	2812306	2812306	+	Silent	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr9:2812306T>C	ENST00000397885.2	-	14	1532	c.1326A>G	c.(1324-1326)ctA>ctG	p.L442L		NM_014878.4	NP_055693.4	Q15397	K0020_HUMAN	KIAA0020	442	PUM-HD.					endoplasmic reticulum|nucleolus	RNA binding			NS(1)|breast(2)|cervix(1)|endometrium(4)|kidney(1)|large_intestine(7)|lung(4)|ovary(1)	21				GBM - Glioblastoma multiforme(50;0.0319)		GTAAGTACAATAGGACCTTCC	0.343000													30	72					0	0	0.037714	0	0
KLF11	8462	broad.mit.edu	37	2	10188051	10188051	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:10188051G>T	ENST00000535335.1	+	3	752	c.536G>T	c.(535-537)cGg>cTg	p.R179L	KLF11_ENST00000305883.1_Missense_Mutation_p.R196L|KLF11_ENST00000540845.1_Missense_Mutation_p.R179L	NM_001177718.1	NP_001171189.1	O14901	KLF11_HUMAN	Kruppel-like factor 11	196					apoptosis|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|regulation of transcription involved in S phase of mitotic cell cycle	nucleus	sequence-specific DNA binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			endometrium(2)|kidney(1)|large_intestine(2)|lung(5)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	16	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.133)|OV - Ovarian serous cystadenocarcinoma(76;0.228)		CCAGATTGCCGGCTTTCTGAC	0.567000													26	96					1.16021e-09	1.39974e-09	0.034045	1	0
PLCB1	23236	broad.mit.edu	37	20	8626754	8626754	+	Nonsense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:8626754G>A	ENST00000378641.3	+	5	865	c.390G>A	c.(388-390)tgG>tgA	p.W130*	PLCB1_ENST00000378637.2_Nonsense_Mutation_p.W130*|PLCB1_ENST00000338037.6_Nonsense_Mutation_p.W130*	NM_182734.1	NP_877398.1	Q9NQ66	PLCB1_HUMAN	phospholipase C, beta 1 (phosphoinositide-specific)	130					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			NS(2)|breast(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(11)|liver(2)|lung(41)|ovary(4)|prostate(3)|skin(12)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(4)	95						TTCAGGAATGGACAAATGAGG	0.383000													5	28					0	0	0.021553	0	0
PTPRN2	5799	broad.mit.edu	37	7	157691365	157691365	+	Splice_Site	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:157691365C>A	ENST00000389413.3	-	11	1804	c.1701_splice	c.e11+1	p.S567_splice	PTPRN2_ENST00000389418.4_Splice_Site_p.S596_splice|PTPRN2_ENST00000389416.4_Splice_Site_p.S579_splice|PTPRN2_ENST00000409483.1_Splice_Site_p.S558_splice|PTPRN2_ENST00000404321.2_Splice_Site_p.S619_splice	NM_130843.2	NP_570858.2	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N polypeptide 2	596						integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(11)|liver(1)|lung(42)|ovary(4)|pleura(1)|prostate(2)|skin(10)|upper_aerodigestive_tract(1)	86	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TGTTACTCACCGACCCGACTC	0.502000													31	86					4.34311e-12	5.34316e-12	0.059317	1	0
OR11H4	390442	broad.mit.edu	37	14	20711024	20711024	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:20711024T>A	ENST00000315409.2	+	1	127	c.74T>A	c.(73-75)cTg>cAg	p.L25Q		NM_001004479.1	NP_001004479.1	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H, member 4	25					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(11)|large_intestine(3)|lung(11)|ovary(1)|upper_aerodigestive_tract(1)	29	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		TTTATTCTCCTGGGATTCCCT	0.423000													14	28					0	0	0.016723	0	0
CHD7	55636	broad.mit.edu	37	8	61750240	61750240	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:61750240G>A	ENST00000423902.2	+	18	4678	c.4199G>A	c.(4198-4200)tGt>tAt	p.C1400Y	CHD7_ENST00000524602.1_Intron	NM_017780.3	NP_060250.2	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1400	Helicase C-terminal.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			NS(1)|breast(6)|central_nervous_system(8)|cervix(2)|endometrium(16)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(16)|lung(49)|ovary(4)|pancreas(2)|prostate(4)|skin(2)|urinary_tract(3)	123		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CAGGCTAGATGTCATAGAATA	0.393000													11	17					0	0	0.069234	0	0
ITGAE	3682	broad.mit.edu	37	17	3662735	3662735	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:3662735C>T	ENST00000263087.4	-	8	925	c.827G>A	c.(826-828)gGg>gAg	p.G276E		NM_002208.4	NP_002199.3	P38570	ITAE_HUMAN	integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide)	276	VWFA.				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			NS(1)|breast(1)|cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(13)|lung(14)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	41				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		GGTGACACTCCCCACTTGAGT	0.552000													41	20					0	0	0.045515	0	0
DNAH3	55567	broad.mit.edu	37	16	21062989	21062989	+	Splice_Site	SNP	A	A	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr16:21062989A>G	ENST00000261383.3	-	29	4238		c.e29+1		DNAH3_ENST00000415178.1_Splice_Site	NM_017539.1	NP_060009.1	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3						ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			NS(3)|autonomic_ganglia(1)|breast(12)|central_nervous_system(3)|cervix(2)|endometrium(15)|haematopoietic_and_lymphoid_tissue(4)|kidney(10)|large_intestine(42)|liver(2)|lung(57)|ovary(14)|pancreas(1)|prostate(7)|skin(11)|stomach(5)|upper_aerodigestive_tract(7)|urinary_tract(6)	202				GBM - Glioblastoma multiforme(48;0.207)		TCCAGAGTGTACCTGTAGCAG	0.547000													32	43					0	0	0.069456	0	0
IQCH	64799	broad.mit.edu	37	15	67681317	67681317	+	Silent	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:67681317C>T	ENST00000335894.4	+	12	1671	c.1605C>T	c.(1603-1605)atC>atT	p.I535I	IQCH_ENST00000546225.1_Silent_p.I283I|IQCH_ENST00000358767.3_Silent_p.I362I|IQCH_ENST00000360277.4_Silent_p.I287I	NM_001031715.2	NP_001026885.1	Q86VS3	IQCH_HUMAN	IQ motif containing H	535										NS(1)|breast(1)|cervix(1)|endometrium(2)|large_intestine(9)|lung(9)|ovary(2)|pancreas(2)|skin(5)|upper_aerodigestive_tract(1)	33				Colorectal(3;0.0856)		TCAAAATTATCACACCTGAAG	0.373000													4	62					0	0	0.029380	0	0
ASNSD1	54529	broad.mit.edu	37	2	190531044	190531044	+	Silent	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:190531044C>G	ENST00000260952.4	+	4	599	c.186C>G	c.(184-186)acC>acG	p.T62T	ASNSD1_ENST00000607829.1_3'UTR|ASNSD1_ENST00000607535.1_3'UTR|ASNSD1_ENST00000607690.1_3'UTR|ASNSD1_ENST00000607062.1_Intron	NM_019048.2	NP_061921.1	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	62	Glutamine amidotransferase type-2.				asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			breast(2)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(7)|ovary(2)|prostate(1)|skin(3)	25			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			TTTTGACTACCCAGCCTGTGG	0.393000													23	45					0	0	0.024334	0	0
MIR519C	574466	broad.mit.edu	37	19	54189752	54189752	+	RNA	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr19:54189752G>T	ENST00000385053.1	+	0	30					NR_030188.1																						AGAGGGAAGCGCTTTCTGTTG	0.398000													32	46					4.11147e-13	5.1949e-13	0.064281	1	0
CATSPER2	117155	broad.mit.edu	37	15	43927614	43927614	+	Splice_Site	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:43927614C>T	ENST00000396879.1	-	11	1234	c.1121_splice	c.e11-1	p.R374_splice	STRC_ENST00000541030.1_Intron|CATSPER2_ENST00000381761.1_Splice_Site_p.R380_splice|CATSPER2_ENST00000355438.2_Splice_Site_p.R374_splice|CATSPER2_ENST00000354127.4_Splice_Site_p.R374_splice|CATSPER2_ENST00000321596.5_Splice_Site_p.R374_splice			Q96P56	CTSR2_HUMAN	cation channel, sperm associated 2	374					cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(1)|large_intestine(3)|lung(8)|ovary(1)|prostate(1)|skin(1)|urinary_tract(2)	22		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		TGTTTTTTCTCCTGCAGAGCA	0.358000													23	60					0	0	0.018920	0	0
COPA	1314	broad.mit.edu	37	1	160262334	160262334	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:160262334C>T	ENST00000241704.7	-	28	3129	c.2900G>A	c.(2899-2901)cGc>cAc	p.R967H	COPA_ENST00000368069.3_Missense_Mutation_p.R976H	NM_001098398.1|NM_004371.3	NP_001091868.1|NP_004362.2	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha	967					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity	p.R976H(2)|p.R967H(2)		central_nervous_system(1)|endometrium(5)|kidney(5)|large_intestine(2)|lung(25)|ovary(1)|prostate(3)|skin(1)|stomach(1)|urinary_tract(2)	46	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ATAGGTTGTGCGGCCTCGGGC	0.502000													5	161					0	0	0.014758	0	0
IGKV1-17	28937	broad.mit.edu	37	2	89416835	89416835	+	RNA	SNP	G	G	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:89416835G>C	ENST00000490686.1	-	0	375																											ACTGTGGGAGGGTAACTATTA	0.522000													33	83					0	0	0.064281	0	0
ZNF721	170960	broad.mit.edu	37	4	436825	436825	+	Silent	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:436825T>C	ENST00000338977.5	-	2	1443	c.1395A>G	c.(1393-1395)caA>caG	p.Q465Q	ABCA11P_ENST00000451020.2_RNA|ZNF721_ENST00000511833.2_Silent_p.Q477Q|ZNF721_ENST00000507078.1_Intron|ZNF721_ENST00000506646.1_Intron					zinc finger protein 721											endometrium(2)|kidney(2)|large_intestine(15)|lung(6)|ovary(1)|skin(1)|stomach(5)|urinary_tract(1)	33						CTTTGCCACATTGCTTACATT	0.368000													9	31					0	0	0.069234	0	0
IGKV3-15	28913	broad.mit.edu	37	2	89384823	89384823	+	RNA	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:89384823C>A	ENST00000390252.2	-	0	291																											AGATGAGGAGCCTGGGAGCCT	0.597000													18	38					5.60225e-13	7.03101e-13	0.041601	1	0
STT3A	3703	broad.mit.edu	37	11	125482928	125482928	+	Silent	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:125482928C>G	ENST00000392708.4	+	13	1569	c.1410C>G	c.(1408-1410)acC>acG	p.T470T	STT3A_ENST00000529196.1_Silent_p.T470T|STT3A_ENST00000531491.1_Silent_p.T378T	NM_001278503.1|NM_001278504.1|NM_152713.3	NP_001265432.1|NP_001265433.1|NP_689926.1	P46977	STT3A_HUMAN	STT3A, subunit of the oligosaccharyltransferase complex (catalytic)	470					post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity			NS(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(3)|lung(15)|skin(1)	33	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		TTCTCATCACCTACACCTTTC	0.438000													72	66					0	0	0.048971	0	0
HJURP	55355	broad.mit.edu	37	2	234749348	234749348	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:234749348C>A	ENST00000411486.2	-	8	2143	c.2078G>T	c.(2077-2079)cGc>cTc	p.R693L	HJURP_ENST00000441687.1_Missense_Mutation_p.R608L|HJURP_ENST00000432087.1_Missense_Mutation_p.R639L	NM_018410.3	NP_060880.3	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	693					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			NS(2)|breast(2)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(3)|kidney(3)|large_intestine(3)|lung(11)|ovary(2)|prostate(3)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	38		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		ATTGCCCTGGCGTCCGGAGCC	0.592000													23	54					4.4004e-07	5.04831e-07	0.018920	1	0
SLC22A6	9356	broad.mit.edu	37	11	62751994	62751994	+	Missense_Mutation	SNP	G	G	C	rs67264610		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:62751994G>C	ENST00000377871.3	-	1	435	c.169C>G	c.(169-171)Ctc>Gtc	p.L57V	SLC22A6_ENST00000360421.4_Missense_Mutation_p.L57V|SLC22A6_ENST00000458333.2_Missense_Mutation_p.L57V|SLC22A6_ENST00000421062.2_Missense_Mutation_p.L57V	NM_004790.4|NM_153278.2	NP_004781.2|NP_695010.1	Q4U2R8	S22A6_HUMAN	solute carrier family 22 (organic anion transporter), member 6	57					alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding			breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(6)|lung(18)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	36						TTCTTGCTGAGGTTGGCATCG	0.672000													8	18					0	0	0.013537	0	0
WDR17	116966	broad.mit.edu	37	4	177061070	177061070	+	Missense_Mutation	SNP	G	G	C	rs138006002	byFrequency	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:177061070G>C	ENST00000393643.2	+	10	1639	c.1387G>C	c.(1387-1389)Gcc>Ccc	p.A463P	WDR17_ENST00000508596.1_Missense_Mutation_p.A463P|WDR17_ENST00000507824.2_Missense_Mutation_p.A470P|WDR17_ENST00000280190.4_Missense_Mutation_p.A487P	NM_170710.4	NP_733828.2	Q8IZU2	WDR17_HUMAN	WD repeat domain 17	487										breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(18)|lung(46)|ovary(2)|pancreas(1)|prostate(3)|skin(5)|stomach(1)|upper_aerodigestive_tract(6)|urinary_tract(1)	92		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		ATTCTGCATTGCCTGGAGTCA	0.303000													16	82					0	0	0.038395	0	0
EFCAB12	90288	broad.mit.edu	37	3	129120638	129120638	+	Nonsense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:129120638C>T	ENST00000505956.1	-	9	1679	c.1517G>A	c.(1516-1518)tGg>tAg	p.W506*	EFCAB12_ENST00000326085.3_Nonsense_Mutation_p.W506*	NM_207307.1	NP_997190.1			EF-hand calcium binding domain 12																		ATGACCCGGCCAGAAGGAATT	0.557000													12	9					0	0	0.013537	0	0
COL14A1	7373	broad.mit.edu	37	8	121219295	121219295	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:121219295G>C	ENST00000297848.3	+	10	1423	c.1153G>C	c.(1153-1155)Gtt>Ctt	p.V385L	COL14A1_ENST00000247781.3_Missense_Mutation_p.V290L|COL14A1_ENST00000309791.4_Missense_Mutation_p.V385L|COL14A1_ENST00000537875.1_Missense_Mutation_p.V385L|COL14A1_ENST00000432943.2_3'UTR	NM_021110.1	NP_066933.1	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1	385	Fibronectin type-III 2.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			NS(1)|autonomic_ganglia(1)|breast(11)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(9)|large_intestine(31)|lung(42)|ovary(5)|pancreas(1)|prostate(1)|skin(8)|stomach(2)|upper_aerodigestive_tract(2)	119	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AAAATACAGAGTTGTGTATTA	0.423000													6	24					0	0	0.029380	0	0
PDHX	8050	broad.mit.edu	37	11	34978962	34978962	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:34978962G>T	ENST00000448838.3	+	4	571	c.329G>T	c.(328-330)gGt>gTt	p.G110V	PDHX_ENST00000227868.4_Missense_Mutation_p.G125V|PDHX_ENST00000430469.2_Intron	NM_001135024.1|NM_003477.2	NP_001128496.1|NP_003468.2	O00330	ODPX_HUMAN	pyruvate dehydrogenase complex, component X	125	Lipoyl-binding.				pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	acyltransferase activity			breast(1)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(4)|upper_aerodigestive_tract(1)	16	all_epithelial(35;0.115)|Lung NSC(22;0.218)|all_lung(20;0.242)	all_hematologic(20;0.124)	STAD - Stomach adenocarcinoma(6;0.00113)			ATACGGCTAGGTTCACTAATT	0.358000													23	11					1.77063e-15	2.34828e-15	0.027356	1	0
ZNF804A	91752	broad.mit.edu	37	2	185801643	185801643	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:185801643G>A	ENST00000302277.6	+	4	2114	c.1520G>A	c.(1519-1521)gGa>gAa	p.G507E		NM_194250.1	NP_919226.1	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	507						intracellular	zinc ion binding			NS(5)|breast(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(22)|liver(2)|lung(79)|ovary(7)|pancreas(1)|prostate(2)|skin(12)|urinary_tract(1)	146						TCTACAGAAGGACTCACTGAT	0.378000													43	91					0	0	0.033182	0	0
SORCS1	114815	broad.mit.edu	37	10	108439436	108439436	+	Silent	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr10:108439436C>A	ENST00000263054.6	-	11	1624	c.1617G>T	c.(1615-1617)ggG>ggT	p.G539G	SORCS1_ENST00000344440.6_Silent_p.G539G|SORCS1_ENST00000369698.1_Silent_p.G74G	NM_001206570.1|NM_052918.4	NP_001193499.1|NP_443150.3	Q8WY21	SORC1_HUMAN	sortilin-related VPS10 domain containing receptor 1	539						integral to membrane	neuropeptide receptor activity|protein binding			breast(5)|central_nervous_system(1)|cervix(2)|endometrium(9)|kidney(2)|large_intestine(24)|lung(69)|ovary(1)|prostate(8)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	127		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TGGCAATGATCCCTGATGTGT	0.413000													8	17					0.000274275	0.000299938	0.047766	1	0
LCE4A	199834	broad.mit.edu	37	1	152681701	152681701	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:152681701C>A	ENST00000368777.1	+	2	406	c.150C>A	c.(148-150)tgC>tgA	p.C50*	LCE4A_ENST00000335535.3_Nonsense_Mutation_p.C50*			Q5TA78	LCE4A_HUMAN	late cornified envelope 4A	50	Cys-rich.				keratinization					endometrium(1)|kidney(1)|large_intestine(2)|lung(5)|skin(1)	10	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.116)			GCTGTGGTTGCTGCAGCTCTG	0.582000													105	25					2.17066e-49	3.24731e-49	0.048971	1	0
HECW2	57520	broad.mit.edu	37	2	197081790	197081790	+	Missense_Mutation	SNP	C	C	A	rs143511416		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:197081790C>A	ENST00000260983.2	-	27	4618	c.4436G>T	c.(4435-4437)cGg>cTg	p.R1479L	HECW2_ENST00000409111.1_Missense_Mutation_p.R1123L	NM_020760.1	NP_065811.1	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	1479	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			biliary_tract(1)|breast(3)|central_nervous_system(4)|cervix(2)|endometrium(7)|kidney(4)|large_intestine(24)|lung(45)|ovary(5)|pancreas(2)|prostate(2)|skin(10)|upper_aerodigestive_tract(2)|urinary_tract(2)	113						CCAGAACCACCGAATTACAAT	0.358000													22	65					1.22574e-08	1.44159e-08	0.069288	1	0
BSN	8927	broad.mit.edu	37	3	49691540	49691540	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:49691540G>T	ENST00000296452.4	+	5	4665	c.4551G>T	c.(4549-4551)atG>atT	p.M1517I		NM_003458.3	NP_003449.2	Q9UPA5	BSN_HUMAN	bassoon presynaptic cytomatrix protein	1517					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			breast(8)|central_nervous_system(2)|cervix(2)|endometrium(16)|kidney(3)|large_intestine(17)|lung(37)|ovary(7)|pancreas(1)|prostate(4)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	106				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCTCAGACATGCCACGGAGCC	0.627000													14	13					1.99824e-07	2.32093e-07	0.033300	1	0
ARHGEF25	115557	broad.mit.edu	37	12	58010269	58010269	+	Silent	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:58010269G>A	ENST00000286494.4	+	14	2083	c.1623G>A	c.(1621-1623)ctG>ctA	p.L541L	ARHGEF25_ENST00000333972.7_Silent_p.L580L|ARHGEF25_ENST00000477314.1_3'UTR|AC025165.8_ENST00000593846.1_RNA|AC025165.8_ENST00000356672.3_RNA|AC025165.8_ENST00000444467.1_RNA	NM_182947.3	NP_891992.2	Q86VW2	ARHGP_HUMAN	Rho guanine nucleotide exchange factor (GEF) 25	541					regulation of Rho protein signal transduction	cytosol|plasma membrane|sarcomere	Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(1)|endometrium(1)|large_intestine(7)|lung(10)|pancreas(1)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	28						TCTTGCCACTGGATAAACAGG	0.552000													18	18					0	0	0.062417	0	0
NFATC4	4776	broad.mit.edu	37	14	24842414	24842414	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:24842414T>C	ENST00000413692.2	+	5	1730	c.1586T>C	c.(1585-1587)aTg>aCg	p.M529T	NFATC4_ENST00000556759.1_Start_Codon_SNP_p.M1T|NFATC4_ENST00000556169.1_Missense_Mutation_p.M454T|NFATC4_ENST00000424781.2_Missense_Mutation_p.M479T|NFATC4_ENST00000554661.1_Missense_Mutation_p.M396T|NFATC4_ENST00000556279.1_Missense_Mutation_p.M498T|NFATC4_ENST00000555453.1_Missense_Mutation_p.M454T|NFATC4_ENST00000554966.1_Missense_Mutation_p.M479T|NFATC4_ENST00000250373.4_Missense_Mutation_p.M466T|NFATC4_ENST00000555590.1_Missense_Mutation_p.M479T|NFATC4_ENST00000557451.1_Missense_Mutation_p.M396T|NFATC4_ENST00000422617.3_Missense_Mutation_p.M454T|NFATC4_ENST00000553469.1_Missense_Mutation_p.M498T|NFATC4_ENST00000554591.1_Missense_Mutation_p.M529T|NFATC4_ENST00000554473.1_Start_Codon_SNP_p.M1T|NFATC4_ENST00000554050.1_Missense_Mutation_p.M466T|NFATC4_ENST00000555167.1_Start_Codon_SNP_p.M1T|NFATC4_ENST00000554344.1_Missense_Mutation_p.M396T|NFATC4_ENST00000553708.1_Missense_Mutation_p.M466T|NFATC4_ENST00000553879.1_Missense_Mutation_p.M396T|NFATC4_ENST00000539237.2_Missense_Mutation_p.M498T	NM_001136022.1|NM_001198967.1	NP_001129494.1|NP_001185896.1	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4	466	RHD.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			breast(2)|central_nervous_system(1)|endometrium(1)|kidney(4)|large_intestine(7)|liver(4)|lung(12)|ovary(1)|skin(2)	34				GBM - Glioblastoma multiforme(265;0.018)		ACCCTACAGATGTTCATCGGC	0.557000													4	15					0	0	0.021553	0	0
LPHN3	23284	broad.mit.edu	37	4	62903541	62903541	+	Silent	SNP	T	T	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:62903541T>A	ENST00000512091.1	+	23	4227	c.3480T>A	c.(3478-3480)tcT>tcA	p.S1160S	LPHN3_ENST00000508946.1_Silent_p.S1160S|LPHN3_ENST00000509896.1_Silent_p.S1228S|LPHN3_ENST00000506700.1_Silent_p.S1151S|LPHN3_ENST00000506720.1_Silent_p.S1228S|LPHN3_ENST00000506746.1_Silent_p.S1219S|LPHN3_ENST00000514157.1_Silent_p.S1151S|LPHN3_ENST00000507625.1_Silent_p.S1219S|LPHN3_ENST00000511324.1_Silent_p.S1219S|LPHN3_ENST00000545650.1_Silent_p.S1160S|LPHN3_ENST00000514591.1_Silent_p.S1160S|LPHN3_ENST00000507164.1_Silent_p.S1219S|LPHN3_ENST00000514996.1_Silent_p.S1151S|LPHN3_ENST00000508693.1_Silent_p.S1228S|LPHN3_ENST00000504896.1_Silent_p.S1160S			Q9HAR2	LPHN3_HUMAN	latrophilin 3	1138					neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			breast(5)|central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(5)|kidney(4)|large_intestine(21)|lung(73)|ovary(1)|pancreas(1)|prostate(6)|upper_aerodigestive_tract(1)	125						CATCTGGTTCTCGAACTCCTG	0.423000													33	83					0	0	0.069456	0	0
RUNX1T1	862	broad.mit.edu	37	8	92982958	92982958	+	Silent	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:92982958C>A	ENST00000523629.1	-	11	1921	c.1467G>T	c.(1465-1467)acG>acT	p.T489T	RUNX1T1_ENST00000436581.2_Silent_p.T500T|RUNX1T1_ENST00000396218.1_Silent_p.T462T|RUNX1T1_ENST00000360348.2_Silent_p.T452T|RUNX1T1_ENST00000265814.3_Silent_p.T489T|RUNX1T1_ENST00000520724.1_Silent_p.T452T|RUNX1T1_ENST00000422361.2_Silent_p.T452T|RUNX1T1_ENST00000518844.1_Silent_p.T462T	NM_001198626.1|NM_001198630.1|NM_001198633.1|NM_175634.2	NP_001185555.1|NP_001185559.1|NP_001185562.1|NP_783552.1	Q06455	MTG8_HUMAN	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	489					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.T500T(1)|p.T489T(1)|p.T452T(1)		NS(1)|breast(3)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(17)|lung(54)|pancreas(1)|skin(3)|upper_aerodigestive_tract(2)	86			BRCA - Breast invasive adenocarcinoma(11;0.0141)			CCTCGGCGACCGTGCGCTCCA	0.602000													15	7					3.32936e-07	3.84315e-07	0.038395	1	0
APOB	338	broad.mit.edu	37	2	21229634	21229634	+	Nonsense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:21229634G>T	ENST00000233242.1	-	26	10233	c.10106C>A	c.(10105-10107)tCa>tAa	p.S3369*		NM_000384.2	NP_000375.2	P04114	APOB_HUMAN	apolipoprotein B	3369					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			NS(5)|autonomic_ganglia(1)|breast(6)|central_nervous_system(4)|cervix(3)|endometrium(19)|kidney(10)|large_intestine(63)|liver(5)|lung(125)|ovary(16)|pancreas(1)|prostate(5)|skin(31)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(6)	305	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGATGAAGATGAAGAAAGGAG	0.388000													27	62					9.39395e-14	1.2115e-13	0.030593	1	0
ZIM2	23619	broad.mit.edu	37	19	57286884	57286884	+	Missense_Mutation	SNP	A	A	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr19:57286884A>T	ENST00000391708.3	-	12	1298	c.756T>A	c.(754-756)gaT>gaA	p.D252E	ZIM2_ENST00000599935.1_Missense_Mutation_p.D252E|ZIM2_ENST00000221722.5_Missense_Mutation_p.D252E|AC006115.3_ENST00000594400.1_RNA|ZIM2_ENST00000593711.1_Missense_Mutation_p.D252E|AC006115.3_ENST00000597946.1_RNA|ZIM2_ENST00000601070.1_Missense_Mutation_p.D252E|AC006115.3_ENST00000595954.1_RNA	NM_001146326.1|NM_001146327.1	NP_001139798.1|NP_001139799.1			zinc finger, imprinted 2											NS(1)|breast(1)|endometrium(1)|kidney(1)|large_intestine(10)|lung(20)|ovary(3)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	44		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		CCAATGGATCATCATGAGACT	0.478000													24	38					0	0	0.027356	0	0
TAS2R38	5726	broad.mit.edu	37	7	141673134	141673134	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:141673134G>T	ENST00000547270.1	-	1	439	c.356C>A	c.(355-357)tCc>tAc	p.S119Y		NM_176817.4	NP_789787.4	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	119					sensory perception of taste	integral to membrane	G-protein coupled receptor activity			NS(2)|breast(1)|endometrium(3)|kidney(2)|large_intestine(3)|lung(7)|prostate(1)|skin(1)|stomach(1)	21	Melanoma(164;0.0171)					GATGAGCTTGGAGCAGTAAAG	0.522000													13	50					5.35267e-07	6.10335e-07	0.043863	1	0
IGSF1	3547	broad.mit.edu	37	X	130417145	130417145	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chrX:130417145C>G	ENST00000370904.1	-	12	1644	c.734G>C	c.(733-735)gGa>gCa	p.G245A	IGSF1_ENST00000370903.3_Missense_Mutation_p.G254A|IGSF1_ENST00000370910.1_Missense_Mutation_p.G245A|IGSF1_ENST00000361420.3_Missense_Mutation_p.G254A			Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1	254	Ig-like C2-type 3.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			breast(2)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(15)|liver(1)|lung(37)|ovary(4)|skin(3)|upper_aerodigestive_tract(2)	78						AAAGGTCATTCCATAGATTGG	0.453000													24	26					0	0	0.076483	0	0
POTEG	404785	broad.mit.edu	37	14	19553789	19553789	+	Missense_Mutation	SNP	G	G	T	rs145666754		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:19553789G>T	ENST00000409832.3	+	1	425	c.373G>T	c.(373-375)Gac>Tac	p.D125Y		NM_001005356.2	NP_001005356.1	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	125										cervix(1)|endometrium(4)|kidney(3)|large_intestine(4)|lung(31)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	47						AGACTACGACGACAGCGCTTT	0.592000													24	235					1.61788e-16	2.17657e-16	0.050027	1	0
KIAA0895	23366	broad.mit.edu	37	7	36373501	36373501	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:36373501G>A	ENST00000317020.6	-	4	1417	c.1117C>T	c.(1117-1119)Cgg>Tgg	p.R373W	KIAA0895_ENST00000453212.1_Missense_Mutation_p.R179W|KIAA0895_ENST00000338533.5_Missense_Mutation_p.R411W|KIAA0895_ENST00000297063.6_Missense_Mutation_p.R424W|KIAA0895_ENST00000440378.1_Missense_Mutation_p.R421W|KIAA0895_ENST00000436884.1_Missense_Mutation_p.R321W|KIAA0895_ENST00000480192.1_5'UTR	NM_015314.2	NP_056129.2	Q8NCT3	K0895_HUMAN	KIAA0895	424										breast(2)|endometrium(1)|kidney(1)|large_intestine(6)|liver(1)|lung(11)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	26						CTCTTGGCCCGTACACAATAA	0.418000													29	55					0	0	0.037714	0	0
TOE1	114034	broad.mit.edu	37	1	45807214	45807214	+	Silent	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:45807214C>T	ENST00000372090.5	+	4	889	c.306C>T	c.(304-306)ctC>ctT	p.L102L	TOE1_ENST00000495703.1_3'UTR|TOE1_ENST00000539779.1_Intron	NM_025077.3	NP_079353.3	Q96GM8	TOE1_HUMAN	target of EGR1, member 1 (nuclear)	102						nuclear speck|nucleolus	nucleic acid binding|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(3)|skin(1)	11	Acute lymphoblastic leukemia(166;0.155)					CCCTGGGCCTCGCCTGCTTCA	0.572000													4	12					0	0	0.009096	0	0
RP11-909M7.3	0	broad.mit.edu	37	14	101441214	101441214	+	RNA	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:101441214C>T	ENST00000554693.2	+	0	462				SNORD114-17_ENST00000364699.1_RNA																							ACTCTGAGGTCCAACACAGCA	0.378000													34	17					0	0	0.050027	0	0
DAPK1	1612	broad.mit.edu	37	9	90313576	90313576	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr9:90313576G>T	ENST00000469640.2	+	23	2992	c.2617G>T	c.(2617-2619)Ggt>Tgt	p.G873C	DAPK1_ENST00000472284.1_Missense_Mutation_p.G873C|DAPK1_ENST00000408954.3_Missense_Mutation_p.G873C|DAPK1_ENST00000358077.5_Missense_Mutation_p.G873C|DAPK1_ENST00000491893.1_Missense_Mutation_p.G807C			P53355	DAPK1_HUMAN	death-associated protein kinase 1	873					apoptosis|induction of apoptosis by extracellular signals|intracellular protein kinase cascade	actin cytoskeleton|cytoplasm	ATP binding|calmodulin binding|protein serine/threonine kinase activity			breast(5)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(27)|liver(2)|lung(17)|ovary(1)|prostate(2)|skin(3)|stomach(1)	72						CCCAGCCTTCGGTGGCAAGCT	0.612000									Chronic Lymphocytic Leukemia, Familial Clustering of				11	40					1.5739e-10	1.91116e-10	0.028581	1	0
FSCB	84075	broad.mit.edu	37	14	44975066	44975066	+	Silent	SNP	A	A	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:44975066A>T	ENST00000340446.4	-	1	1416	c.1125T>A	c.(1123-1125)tcT>tcA	p.S375S		NM_032135.3	NP_115511.3	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	375	Pro-rich.					cilium				breast(4)|central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(10)|lung(47)|ovary(2)|pancreas(1)|prostate(5)|skin(5)|stomach(2)|upper_aerodigestive_tract(4)|urinary_tract(1)	89				GBM - Glioblastoma multiforme(112;0.128)		CTACTGAAGGAGACTTTTCAG	0.522000													78	122					0	0	0.048971	0	0
ARHGEF10	9639	broad.mit.edu	37	8	1844525	1844525	+	Silent	SNP	A	A	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:1844525A>G	ENST00000518288.1	+	15	1705	c.1542A>G	c.(1540-1542)gcA>gcG	p.A514A	ARHGEF10_ENST00000398564.1_Silent_p.A514A|ARHGEF10_ENST00000398560.1_Silent_p.A475A|ARHGEF10_ENST00000262112.6_Silent_p.A514A|ARHGEF10_ENST00000349830.3_Silent_p.A489A|ARHGEF10_ENST00000520359.1_Silent_p.A451A			O15013	ARHGA_HUMAN	Rho guanine nucleotide exchange factor (GEF) 10	514	DH.				centrosome duplication|myelination in peripheral nervous system|positive regulation of GTP catabolic process|positive regulation of stress fiber assembly|regulation of Rho protein signal transduction|spindle assembly involved in mitosis	centrosome|cytosol|soluble fraction	kinesin binding|Rho guanyl-nucleotide exchange factor activity			endometrium(3)|large_intestine(11)|lung(11)|prostate(3)|skin(3)|stomach(3)|urinary_tract(1)	35		Colorectal(14;3.46e-05)|Renal(68;0.000518)|Ovarian(12;0.00409)|Myeloproliferative disorder(644;0.0255)|Hepatocellular(245;0.0834)		COAD - Colon adenocarcinoma(149;1.62e-05)|BRCA - Breast invasive adenocarcinoma(11;1.68e-05)|KIRC - Kidney renal clear cell carcinoma(542;0.00361)|READ - Rectum adenocarcinoma(644;0.0718)		TGCTGGATGCATACAGTGAAT	0.408000													10	11					0	0	0.069234	0	0
LPCAT4	254531	broad.mit.edu	37	15	34651923	34651923	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:34651923C>A	ENST00000314891.6	-	13	1443	c.1266G>T	c.(1264-1266)gaG>gaT	p.E422D		NM_153613.2	NP_705841.2	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	422					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding			NS(1)|breast(1)|large_intestine(2)|lung(5)|prostate(1)	10						GGTTGGGACCCTCTGCTTGCT	0.577000													13	24					1.49906e-05	1.65872e-05	0.020292	1	0
NF1	4763	broad.mit.edu	37	17	29548866	29548866	+	Splice_Site	SNP	A	A	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:29548866A>T	ENST00000358273.4	+	15	2024		c.e15-1		NF1_ENST00000356175.3_Splice_Site|NF1_ENST00000431387.4_Splice_Site	NM_001042492.2	NP_001035957.1	P21359	NF1_HUMAN	neurofibromin 1						actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.0?(8)|p.?(5)	NF1/ACCN1(2)	autonomic_ganglia(12)|breast(11)|central_nervous_system(72)|cervix(6)|endometrium(12)|haematopoietic_and_lymphoid_tissue(59)|kidney(9)|large_intestine(39)|liver(1)|lung(80)|ovary(20)|pancreas(2)|prostate(2)|skin(8)|soft_tissue(249)|stomach(2)|thyroid(1)|upper_aerodigestive_tract(5)|urinary_tract(9)	599		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TAAAAAATTCAGGCTCTGCTG	0.318000			"""D, Mis, N, F, S, O"""		"""neurofibroma, glioma"""	"""neurofibroma, glioma"""			Neurofibromatosis, type 1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			9	13					0	0	0.013537	0	0
SERPINA9	327657	broad.mit.edu	37	14	94942514	94942514	+	Silent	SNP	G	G	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:94942514G>C	ENST00000546329.1	-	1	156	c.78C>G	c.(76-78)acC>acG	p.T26T	SERPINA9_ENST00000424550.2_5'UTR|SERPINA9_ENST00000337425.5_5'UTR|SERPINA9_ENST00000298845.7_5'UTR|SERPINA9_ENST00000448305.2_5'UTR|SERPINA9_ENST00000539349.1_Intron			Q86WD7	SPA9_HUMAN	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	48					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			NS(1)|central_nervous_system(1)|kidney(1)|large_intestine(1)|lung(17)	21		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		ttgcatggttggtgagccctg	0.532000													45	303					0	0	0.048971	0	0
CCDC144NL-AS1	440416	broad.mit.edu	37	17	20806089	20806089	+	RNA	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:20806089C>T	ENST00000577537.1	+	0	1273				RP11-344E13.3_ENST00000417232.2_RNA|RP11-344E13.3_ENST00000583962.1_RNA|RP11-344E13.3_ENST00000577860.1_RNA|RP11-344E13.3_ENST00000439794.2_RNA																							ATTTCGACTCCCAAGGAACCA	0.473000													3	6					0	0	0.004672	0	0
RIT1	6016	broad.mit.edu	37	1	155880486	155880486	+	Missense_Mutation	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:155880486T>C	ENST00000368323.3	-	2	271	c.67A>G	c.(67-69)Aaa>Gaa	p.K23E	RIT1_ENST00000461050.1_5'UTR|RIT1_ENST00000368322.3_Missense_Mutation_p.K40E|RIT1_ENST00000539040.1_Intron	NM_006912.5	NP_008843.1	Q92963	RIT1_HUMAN	Ras-like without CAAX 1	23					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			breast(1)|kidney(1)|large_intestine(3)|lung(12)|skin(1)|urinary_tract(1)	19	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;1.79e-05)			ATCACTAGTTTGTACTCCCGT	0.532000													132	119					0	0	0.048971	0	0
ZBTB20	26137	broad.mit.edu	37	3	114069589	114069589	+	Missense_Mutation	SNP	T	T	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:114069589T>A	ENST00000462705.1	-	11	1938	c.1117A>T	c.(1117-1119)Atc>Ttc	p.I373F	ZBTB20_ENST00000471418.1_Missense_Mutation_p.I373F|ZBTB20_ENST00000357258.3_Missense_Mutation_p.I373F|ZBTB20_ENST00000481632.1_Missense_Mutation_p.I373F|ZBTB20_ENST00000474710.1_Missense_Mutation_p.I446F|ZBTB20_ENST00000464560.1_Missense_Mutation_p.I373F|ZBTB20_ENST00000393785.2_Missense_Mutation_p.I373F	NM_001164343.1	NP_001157815.1	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20	446					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(10)|kidney(2)|large_intestine(8)|lung(15)|ovary(4)|pancreas(1)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)	48				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		CTGACAGTGATAACAGTGCTG	0.557000													27	27					0	0	0.034045	0	0
ZNF208	7757	broad.mit.edu	37	19	22154763	22154763	+	Nonsense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr19:22154763C>A	ENST00000397126.4	-	4	3221	c.3073G>T	c.(3073-3075)Gga>Tga	p.G1025*	ZNF208_ENST00000599916.1_Intron|ZNF208_ENST00000601773.1_Intron	NM_007153.3	NP_009084.2			zinc finger protein 208											breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(18)|liver(1)|lung(71)|ovary(6)|prostate(3)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	113		all_lung(12;0.0961)|Lung NSC(12;0.103)				GGTGTCTCTCCAGTGTGAATT	0.413000													31	36					2.46105e-21	3.48649e-21	0.045705	1	0
SLC26A4	5172	broad.mit.edu	37	7	107315392	107315392	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:107315392G>T	ENST00000265715.3	+	6	827	c.603G>T	c.(601-603)ttG>ttT	p.L201F		NM_000441.1	NP_000432.1	O43511	S26A4_HUMAN	solute carrier family 26 (anion exchanger), member 4	201					regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			central_nervous_system(2)|endometrium(1)|kidney(5)|large_intestine(8)|lung(16)|ovary(3)|prostate(1)|skin(7)|upper_aerodigestive_tract(1)|urinary_tract(2)	46						TATCGTAGTTGATATTTGGTG	0.403000									Pendred syndrome				33	67					1.07637e-12	1.34187e-12	0.074837	1	0
OR5T2	219464	broad.mit.edu	37	11	55999704	55999704	+	Missense_Mutation	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:55999704C>G	ENST00000313264.4	-	1	1033	c.958G>C	c.(958-960)Gtg>Ctg	p.V320L		NM_001004746.1	NP_001004746.1	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T, member 2	320					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(6)|kidney(1)|large_intestine(5)|lung(22)|ovary(2)|prostate(1)|skin(1)|stomach(3)	41	Esophageal squamous(21;0.00448)					AAGGGAATCACAATGGTGTAA	0.363000													32	139					0	0	0.054565	0	0
KRTAP13-2	337959	broad.mit.edu	37	21	31744328	31744328	+	Silent	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr21:31744328C>G	ENST00000399889.2	-	1	229	c.204G>C	c.(202-204)acG>acC	p.T68T		NM_181621.3	NP_853652.1	Q52LG2	KR132_HUMAN	keratin associated protein 13-2	68	5 X 10 AA approximate repeats.					intermediate filament				endometrium(1)|kidney(1)|lung(14)|prostate(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	21						CCACATAGGACGTCTGGCAGC	0.602000													44	43					0	0	0.048971	0	0
SERPINB11	89778	broad.mit.edu	37	18	61390496	61390496	+	RNA	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr18:61390496G>A	ENST00000544088.1	+	0	1104				SERPINB11_ENST00000538847.1_RNA|SERPINB11_ENST00000536691.1_RNA|SERPINB11_ENST00000382749.5_RNA	NM_080475.2	NP_536723.2	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene)						regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)|cervix(1)|kidney(1)|lung(3)	6		Esophageal squamous(42;0.129)				GGAGGCAGCAGCAGCCACTGG	0.493000													112	69					0	0	0.048971	0	0
HERC6	55008	broad.mit.edu	37	4	89358911	89358911	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:89358911A>G	ENST00000380265.5	+	19	2608	c.2425A>G	c.(2425-2427)Ata>Gta	p.I809V	HERC6_ENST00000264346.7_Missense_Mutation_p.I845V	NM_001165136.1	NP_001158608.1	Q8IVU3	HERC6_HUMAN	HECT and RLD domain containing E3 ubiquitin protein ligase family member 6	845	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytosol	ubiquitin-protein ligase activity			endometrium(1)|kidney(1)|large_intestine(2)|lung(6)|ovary(1)	11		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000222)		TGGGATCTCCATACCTGTGGA	0.313000													7	9					0	0	0.047766	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580679	140580679	+	Silent	SNP	C	C	A	rs35333043		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:140580679C>A	ENST00000354757.3	+	1	1332	c.1332C>A	c.(1330-1332)gtC>gtA	p.V444V	PCDHB11_ENST00000536699.1_Silent_p.V79V	NM_018931.2	NP_061754.1	Q9Y5F2	PCDBB_HUMAN		444	Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			NS(2)|breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|lung(23)|ovary(4)|prostate(3)|skin(6)|upper_aerodigestive_tract(5)|urinary_tract(1)	63			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCTCTGACGTCAATGACAACG	0.567000													58	64					3.89483e-19	5.43532e-19	0.048971	1	0
RAD18	56852	broad.mit.edu	37	3	8940671	8940671	+	Missense_Mutation	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:8940671G>A	ENST00000264926.2	-	11	1345	c.1229C>T	c.(1228-1230)cCa>cTa	p.P410L		NM_020165.3	NP_064550.3	Q9NS91	RAD18_HUMAN	RAD18 homolog (S. cerevisiae)	410					DNA repair	nucleus|replication fork	damaged DNA binding|ligase activity|ubiquitin protein ligase binding|Y-form DNA binding|zinc ion binding			breast(1)|endometrium(1)|large_intestine(4)|lung(3)|ovary(2)|prostate(1)|skin(3)	15				OV - Ovarian serous cystadenocarcinoma(96;0.0552)		CAATTCCTCTGGGGAGTCCAG	0.353000								Rad6 pathway					30	22					0	0	0.064281	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134501637	134501637	+	Silent	SNP	G	G	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr9:134501637G>A	ENST00000372195.1	-	10	1617	c.1374C>T	c.(1372-1374)gaC>gaT	p.D458D	RAPGEF1_ENST00000372190.3_Silent_p.D459D|RAPGEF1_ENST00000481260.1_5'UTR|RAPGEF1_ENST00000372189.3_Silent_p.D441D			Q13905	RPGF1_HUMAN	Rap guanine nucleotide exchange factor (GEF) 1	441					activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			NS(2)|breast(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(4)|large_intestine(8)|lung(9)|ovary(2)|prostate(4)|skin(1)|urinary_tract(1)	39		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		CCAGAGGTCCGTCTGGCTGGG	0.652000													5	16					0	0	0.021553	0	0
RGPD3	653489	broad.mit.edu	37	2	107052703	107052703	+	Splice_Site	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:107052703C>A	ENST00000409886.3	-	12	1722		c.e12-1		RGPD3_ENST00000304514.7_Splice_Site	NM_001144013.1	NP_001137485.1	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3						intracellular transport		binding			breast(2)|central_nervous_system(1)|endometrium(50)|kidney(4)|lung(11)|ovary(1)|urinary_tract(2)	71						GTTTCCAGGTCTAAAAAATAG	0.348000													14	44					4.7546e-09	5.69943e-09	0.028581	1	0
FYB	2533	broad.mit.edu	37	5	39153585	39153585	+	Silent	SNP	T	T	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:39153585T>C	ENST00000351578.6	-	3	1447	c.1257A>G	c.(1255-1257)ctA>ctG	p.L419L	FYB_ENST00000540520.1_Silent_p.L429L|FYB_ENST00000505428.1_Silent_p.L419L|FYB_ENST00000515010.1_Silent_p.L419L|FYB_ENST00000512982.1_Silent_p.L419L	NM_199335.3	NP_955367.1	O15117	FYB_HUMAN	FYN binding protein	419	Interaction with SKAP1.				cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			endometrium(2)|kidney(4)|large_intestine(6)|liver(1)|lung(29)|ovary(2)|upper_aerodigestive_tract(1)	45	all_lung(31;0.000343)		Epithelial(62;0.235)			TTCTGGGAGGTAGGCTTGGGA	0.483000													146	249					0	0	0.048971	0	0
GJB5	2709	broad.mit.edu	37	1	35223474	35223474	+	Silent	SNP	A	A	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:35223474A>G	ENST00000338513.1	+	2	716	c.543A>G	c.(541-543)tcA>tcG	p.S181S		NM_005268.3	NP_005259.1	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	181					cell communication|epidermis development	connexon complex|integral to membrane				endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(3)|ovary(1)|skin(1)|stomach(1)	10		Myeloproliferative disorder(586;0.0393)				CCAAGCCCTCAGAGAAGAACA	0.517000													6	27					0	0	0.038147	0	0
PTCHD2	57540	broad.mit.edu	37	1	11574578	11574578	+	Missense_Mutation	SNP	G	G	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:11574578G>C	ENST00000294484.6	+	4	1586	c.1448G>C	c.(1447-1449)tGc>tCc	p.C483S	PTCHD2_ENST00000389575.3_Missense_Mutation_p.C483S	NM_020780.1	NP_065831.1	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	483	SSD.				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			NS(3)|breast(2)|endometrium(9)|kidney(4)|large_intestine(5)|lung(34)|ovary(3)|pancreas(1)|prostate(6)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	76	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		CTCACCTCCTGCTCAGGTAGG	0.567000													10	24					0	0	0.016723	0	0
PIGX	54965	broad.mit.edu	37	3	196449332	196449332	+	Missense_Mutation	SNP	C	C	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:196449332C>T	ENST00000314118.4	+	3	382	c.100C>T	c.(100-102)Cac>Tac	p.H34Y	PIGX_ENST00000421265.1_Missense_Mutation_p.H34Y|PIGX_ENST00000495440.1_3'UTR|PIGX_ENST00000541663.1_5'UTR	NM_017861.3	NP_060331.3	Q8TBF5	PIGX_HUMAN	phosphatidylinositol glycan anchor biosynthesis, class X	75					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane				endometrium(1)|large_intestine(5)|lung(4)|stomach(1)	11	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.07e-23)|all cancers(36;1.08e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00322)		TGAGGACTTGCACACCTGCCG	0.388000													30	20					0	0	0.034045	0	0
SLC17A1	6568	broad.mit.edu	37	6	25820094	25820094	+	Missense_Mutation	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:25820094G>T	ENST00000244527.4	-	4	372	c.257C>A	c.(256-258)tCc>tAc	p.S86Y	SLC17A1_ENST00000427328.1_Missense_Mutation_p.S86Y|SLC17A1_ENST00000476801.1_Missense_Mutation_p.S86Y|SLC17A1_ENST00000468082.1_Missense_Mutation_p.S86Y	NM_005074.3	NP_005065.2	Q14916	NPT1_HUMAN	solute carrier family 17 (organic anion transporter), member 1	86					sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(6)|lung(14)|ovary(3)|pancreas(1)|skin(3)|upper_aerodigestive_tract(1)	36						ATAGGAGGTGGAACTCAAGAT	0.408000													91	89					3.78979e-47	5.62453e-47	0.048971	1	0
ZNF704	619279	broad.mit.edu	37	8	81582794	81582794	+	Silent	SNP	C	C	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:81582794C>G	ENST00000327835.3	-	5	834	c.603G>C	c.(601-603)ggG>ggC	p.G201G	ZNF704_ENST00000520336.1_5'UTR	NM_001033723.2	NP_001028895.1	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	201						intracellular	zinc ion binding			lung(9)|skin(1)|upper_aerodigestive_tract(1)	11	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			TCAGCACCTTCCCACAGTTTT	0.463000													34	18					0	0	0.074837	0	0
KCNV1	27012	broad.mit.edu	37	8	110980784	110980784	+	Missense_Mutation	SNP	C	C	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:110980784C>A	ENST00000524391.1	-	4	2068	c.1036G>T	c.(1036-1038)Gtc>Ttc	p.V346F	KCNV1_ENST00000297404.1_Missense_Mutation_p.V346F			Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	346						voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			breast(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(20)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	37	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			AGTAGGCCGACTTCTTCGTAA	0.453000													21	19					3.28513e-13	4.17904e-13	0.021523	1	0
TGIF2LX	90316	broad.mit.edu	37	X	89177555	89177555	+	Silent	SNP	G	G	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chrX:89177555G>T	ENST00000561129.2	+	1	601	c.471G>T	c.(469-471)ctG>ctT	p.L157L	TGIF2LX_ENST00000283891.5_Silent_p.L157L			Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	157						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(29)|ovary(1)|skin(3)|urinary_tract(1)	40						TACAAAGCCTGCCCCTGTGGC	0.607000													12	15					1.52009e-12	1.8825e-12	0.024245	1	0
FLI1	2313	broad.mit.edu	37	11	128642802	128642802	+	Missense_Mutation	SNP	A	A	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:128642802A>G	ENST00000344954.6	+	4	800	c.412A>G	c.(412-414)Aac>Gac	p.N138D	FLI1_ENST00000281428.8_Missense_Mutation_p.N105D|FLI1_ENST00000534087.1_Missense_Mutation_p.N138D|FLI1_ENST00000429175.2_Missense_Mutation_p.N171D|FLI1_ENST00000525560.1_Intron			Q01543	FLI1_HUMAN	Fli-1 proto-oncogene, ETS transcription factor	171	PNT.				hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2569)	NS(1)|central_nervous_system(2)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(14)|ovary(3)|prostate(2)	31	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		GTGTAAAATGAACAAGGAGGA	0.512000			T	EWSR1	Ewing sarcoma								57	118					0	0	0.048971	0	0
RP5-1198O20.4	0	broad.mit.edu	37	1	44519130	44519131	+	RNA	INS	-	-	G	rs116547024	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:44519130_44519131insG	ENST00000434244.1	+	0	834																											cccctagttctggggggggagg	0.554													3	4	---	---	---	---					
RP11-466L17.1	0	broad.mit.edu	37	1	56061990	56061991	+	RNA	INS	-	-	T	rs148596863		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:56061990_56061991insT	ENST00000422374.1	+	0	158																											actgattgcccttttttttttt	0.366													2	4	---	---	---	---					
GNG12-AS1	100289178	broad.mit.edu	37	1	68344527	68344528	+	RNA	INS	-	-	T	rs148090477		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:68344527_68344528insT	ENST00000420587.1	+	0	134				GNG12-AS1_ENST00000413628.1_RNA	NR_040077.1		Q6ZVV5	Q6ZVV5_HUMAN																			ttttctttttcttttttttttt	0.465													2	4	---	---	---	---					
LINC01362	103283057	broad.mit.edu	37	1	83588064	83588065	+	RNA	INS	-	-	TC	rs141323506	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:83588064_83588065insTC	ENST00000452901.1	+	0	1539																											TTTTTTTTTTTCCCAAAATGCA	0.302													3	3	---	---	---	---					
LINC01364	100505768	broad.mit.edu	37	1	87834623	87834624	+	RNA	INS	-	-	TTGT	rs60049067	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:87834623_87834624insTTGT	ENST00000452509.1	-	0	87					NR_038324.1																						TTAAGTGTGTGttgtttgtttg	0.371													4	6	---	---	---	---					
LINC01057	101928079	broad.mit.edu	37	1	95171037	95171037	+	RNA	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:95171037delG	ENST00000452922.1	-	0	582																											gtaagaggaaggggaaaggtg	0.493													2	4	---	---	---	---					
LOC729970	729970	broad.mit.edu	37	1	95416326	95416327	+	RNA	INS	-	-	CA	rs56760802	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:95416326_95416327insCA	ENST00000438509.1	+	0	489				RP4-639F20.1_ENST00000452846.1_RNA	NR_033998.1																						AATTacacattcacacacacac	0.396													2	4	---	---	---	---					
RP11-202K23.1	0	broad.mit.edu	37	1	102799500	102799501	+	RNA	DEL	AC	AC	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:102799500_102799501delAC	ENST00000447916.1	-	0	339																											AGGGAAacatacacacacacac	0.356													2	4	---	---	---	---					
LOC101927209	101927209	broad.mit.edu	37	1	142623788	142623788	+	RNA	DEL	T	T	-	rs149122083		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:142623788delT	ENST00000369381.2	-	0	5218				RP11-417J8.3_ENST00000426408.1_lincRNA																							TGGGTTCTGGTTTTAGCACGT	0.438													3	6	---	---	---	---					
LOC101927209	101927209	broad.mit.edu	37	1	142626211	142626214	+	RNA	DEL	AAAA	AAAA	-	rs141352147		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:142626211_142626214delAAAA	ENST00000369381.2	-	0	5218				RP11-417J8.3_ENST00000426408.1_lincRNA																							tccatctcagaaaaaaaaaaaaaa	0.382													3	6	---	---	---	---					
RP11-435B5.6	0	broad.mit.edu	37	1	143516178	143516178	+	RNA	DEL	G	G	-	rs61824581		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:143516178delG	ENST00000429884.1	+	0	215																											AAAAGAAAAAGTCATATTCCC	0.284													3	6	---	---	---	---					
SRGAP2B	647135	broad.mit.edu	37	1	144015779	144015780	+	RNA	DEL	AC	AC	-	rs57828590		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:144015779_144015780delAC	ENST00000467933.1	+	0	1108																											ctccagtcctactataacaaga	0.406													6	12	---	---	---	---					
SRGAP2B	647135	broad.mit.edu	37	1	144065790	144065790	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:144065790delT	ENST00000467933.1	+	0	1271																											catgtaaagatttaattaatt	0.303													2	4	---	---	---	---					
LOC645166	645166	broad.mit.edu	37	1	148948880	148948881	+	RNA	INS	-	-	A	rs140431291		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:148948880_148948881insA	ENST00000539543.1	+	0	254					NR_027355.1																						caagactatctaaaaaaaaaaa	0.376													10	14	---	---	---	---					
RP1-91G5.3	0	broad.mit.edu	37	1	152369410	152369411	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:152369410_152369411insA	ENST00000411804.1	+	0	94																											tgaggatgtggaaaaaagggaa	0.327													2	4	---	---	---	---					
LOC400794	400794	broad.mit.edu	37	1	165464912	165464912	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:165464912delA	ENST00000438275.1	-	0	1445				RP11-280O1.2_ENST00000416424.1_RNA|RP11-280O1.2_ENST00000452283.1_RNA|RP11-280O1.2_ENST00000418925.1_RNA|RP11-280O1.2_ENST00000421273.1_RNA																							TTATAGCAGGAAAAAAAAAAA	0.348													3	6	---	---	---	---					
LOC101928673	101928673	broad.mit.edu	37	1	173387764	173387764	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:173387764delA	ENST00000367716.3	-	0	985				RP11-296O14.3_ENST00000437190.1_RNA																							CTTTCATACtaaaaaaaaaaa	0.393													3	5	---	---	---	---					
LOC102724601	102724601	broad.mit.edu	37	1	174104835	174104835	+	RNA	DEL	T	T	-	rs75165126		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:174104835delT	ENST00000426899.1	-	0	338																											aagttgctcctcctaaaattt	0.388													5	1	---	---	---	---					
LOC440704	440704	broad.mit.edu	37	1	190611292	190611293	+	RNA	INS	-	-	T	rs67635566	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:190611292_190611293insT	ENST00000413356.1	+	0	144					NR_033922.1																						CAATCTCTGCATTTTTTTTGCA	0.401													3	4	---	---	---	---					
EEF1A1P14	647167	broad.mit.edu	37	1	194158977	194158977	+	RNA	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:194158977delG	ENST00000454538.1	+	0	384																											AATGCACCATGAAGCTTTGAG	0.448													11	80	---	---	---	---					
LOC400800	400800	broad.mit.edu	37	1	199269774	199269775	+	RNA	DEL	TG	TG	-	rs71709553		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:199269774_199269775delTG	ENST00000452199.1	+	0	309																											GCTGTTGCTTtgtgtgtgtgtg	0.391													2	4	---	---	---	---					
LINC00862	554279	broad.mit.edu	37	1	200319681	200319682	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:200319681_200319682insA	ENST00000367355.1	-	0	550					NR_040064.1																						gactccatctcaaaaaaaaaaa	0.470													4	7	---	---	---	---					
RP11-554K11.2	0	broad.mit.edu	37	1	213682684	213682684	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:213682684delT	ENST00000417161.1	+	0	275																											GAGTTGATCCTTTTTTTTTTT	0.318													2	4	---	---	---	---					
RP11-400N13.1	0	broad.mit.edu	37	1	222284353	222284354	+	RNA	INS	-	-	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:222284353_222284354insC	ENST00000416510.1	-	0	278																											tcctacaggctccccccttttt	0.475													3	4	---	---	---	---					
RP11-400N13.1	0	broad.mit.edu	37	1	222436428	222436429	+	RNA	DEL	AG	AG	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr1:222436428_222436429delAG	ENST00000416510.1	-	0	167																											ggagagagacagagagagagag	0.460													2	4	---	---	---	---					
LOC100506457	100506457	broad.mit.edu	37	2	12465782	12465783	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:12465782_12465783insA	ENST00000412294.1	+	0	412																											CCTTGATAGGGAAAAAATGTGT	0.376													2	4	---	---	---	---					
LINC01317	104355287	broad.mit.edu	37	2	34108393	34108394	+	RNA	INS	-	-	A	rs144393570	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:34108393_34108394insA	ENST00000366209.2	+	0	134																											cctttggacttacagtggtttg	0.505													5	1	---	---	---	---					
AC073218.1	0	broad.mit.edu	37	2	34646187	34646187	+	RNA	DEL	T	T	-	rs11285164		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:34646187delT	ENST00000422558.1	+	0	475																											CTGTCCTGCCTGTCTCTTTCT	0.393													2	4	---	---	---	---					
LOC728730	728730	broad.mit.edu	37	2	39722780	39722780	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:39722780delT	ENST00000449569.1	+	0	282				AC007246.3_ENST00000426083.1_RNA|AC007246.3_ENST00000443038.1_RNA|AC007246.3_ENST00000446698.1_RNA|AC007246.3_ENST00000422128.1_RNA	NR_037875.1																						AGTGTTGGAATTTCAGAGCTT	0.398													2	4	---	---	---	---					
LOC730100	730100	broad.mit.edu	37	2	51737745	51737746	+	RNA	INS	-	-	C	rs34497078		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:51737745_51737746insC	ENST00000440698.1	+	0	694																											AAAAAAAAAAGGGGGGGCCCAG	0.500													4	8	---	---	---	---					
LOC730100	730100	broad.mit.edu	37	2	51952397	51952398	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:51952397_51952398insA	ENST00000440698.1	+	0	753																											ATGAAAGAGCCAAAAAAACCAT	0.381													2	4	---	---	---	---					
LOC730100	730100	broad.mit.edu	37	2	51973097	51973097	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:51973097delT	ENST00000440698.1	+	0	753																											CTGCCAAACGTTTTTTTTTTT	0.313													2	4	---	---	---	---					
LINC01122	400955	broad.mit.edu	37	2	59054241	59054242	+	RNA	INS	-	-	T	rs138894647		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:59054241_59054242insT	ENST00000452840.1	+	0	257																											ttgacctgtagttttttttttt	0.411													2	4	---	---	---	---					
ALMS1P	200420	broad.mit.edu	37	2	73882994	73882995	+	RNA	INS	-	-	A	rs145064644		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:73882994_73882995insA	ENST00000450720.1	+	0	236					NR_003683.2																						gaccttgcctcaaaaaaaaaaa	0.436													4	8	---	---	---	---					
RPIA	22934	broad.mit.edu	37	2	89034132	89034132	+	Splice_Site	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:89034132delG	ENST00000283646.4	+	5	581	c.527_splice	c.e5+1	p.G177_splice		NM_144563.2	NP_653164.2	P49247	RPIA_HUMAN	ribose 5-phosphate isomerase A	177					pentose-phosphate shunt, non-oxidative branch	cytosol	ribose-5-phosphate isomerase activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(5)|lung(8)|ovary(1)|skin(1)	18		Acute lymphoblastic leukemia(2;0.000456)|all_hematologic(2;0.00287)				CAAGGGTGGCGGGTGAGTGTT	0.443													20	78	---	---	---	---					
ANKRD36BP2	645784	broad.mit.edu	37	2	89083951	89083951	+	RNA	DEL	A	A	-	rs111608027		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:89083951delA	ENST00000393525.3	+	0	576																											CTTTTTTTTCAGTGTATTTCT	0.348													3	5	---	---	---	---					
NIFK-AS1	254128	broad.mit.edu	37	2	122469230	122469230	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:122469230delA	ENST00000419902.1	+	0	637					NR_037857.1																						caacagagttaaaaaaaaaaa	0.473													3	3	---	---	---	---					
AC097532.2	0	broad.mit.edu	37	2	133050244	133050245	+	RNA	DEL	TG	TG	-	rs8179688		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:133050244_133050245delTG	ENST00000440802.1	-	0	60																											gttttctggctgtttttttttt	0.297													3	5	---	---	---	---					
AC074363.1	0	broad.mit.edu	37	2	168296854	168296855	+	RNA	INS	-	-	A	rs78973387		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:168296854_168296855insA	ENST00000442316.1	+	0	164																											gactctgtctgaaaaaaaaaaa	0.376													2	4	---	---	---	---					
RP11-762E8.1	0	broad.mit.edu	37	2	196343763	196343763	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:196343763delT	ENST00000606986.1	-	0	359																											ggaccaggtgtttttcagtga	0.498													2	4	---	---	---	---					
AC007879.5	0	broad.mit.edu	37	2	208270900	208270901	+	RNA	DEL	GT	GT	-	rs71412412		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:208270900_208270901delGT	ENST00000418850.1	-	0	400				AC007879.5_ENST00000412387.1_RNA																							CAATTCCATCgtgtgtgtgtgt	0.371													4	3	---	---	---	---					
AC007563.5	0	broad.mit.edu	37	2	217575998	217575999	+	RNA	DEL	GT	GT	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:217575998_217575999delGT	ENST00000447289.1	+	0	298																											gtctctgggagtgtgtgtgtgt	0.460													2	4	---	---	---	---					
AC007563.5	0	broad.mit.edu	37	2	217583508	217583509	+	RNA	INS	-	-	T	rs140450856		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:217583508_217583509insT	ENST00000447289.1	+	0	388																											tacttagtgaattttttttttt	0.421													2	4	---	---	---	---					
AC114765.1	0	broad.mit.edu	37	2	220980913	220980913	+	RNA	DEL	G	G	-	rs66704316		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:220980913delG	ENST00000432993.1	+	0	306																											gagcaggaaagggtccaaaaa	0.403													4	3	---	---	---	---					
AC067956.1	0	broad.mit.edu	37	2	221426391	221426391	+	RNA	DEL	C	C	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:221426391delC	ENST00000414512.1	+	0	368																											cagtgatataccatctcatgc	0.353													2	4	---	---	---	---					
AC010149.4	0	broad.mit.edu	37	2	231425403	231425403	+	RNA	DEL	A	A	-	rs57096864		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr2:231425403delA	ENST00000455357.1	-	0	437				AC010149.4_ENST00000414539.1_RNA																							atatctcaggatactatgatc	0.254													5	2	---	---	---	---					
AC098973.2	0	broad.mit.edu	37	3	27917006	27917006	+	RNA	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:27917006delG	ENST00000414382.1	+	0	336																											AGAGATTACTGGCCTTGCATG	0.428													2	4	---	---	---	---					
LOC101928015	101928015	broad.mit.edu	37	3	30568175	30568177	+	RNA	DEL	GGA	GGA	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:30568175_30568177delGGA	ENST00000450746.1	+	0	82																											CAATGGGCATGGAGGAGGAGGCT	0.414													2	4	---	---	---	---					
ENTPD3-AS1	285266	broad.mit.edu	37	3	40355592	40355592	+	RNA	DEL	C	C	-	rs10717281		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:40355592delC	ENST00000439293.1	-	0	239																											TGATTCTCTTCCCTTCAGCCT	0.448													5	2	---	---	---	---					
AADACL2-AS1	101928142	broad.mit.edu	37	3	151550401	151550401	+	RNA	DEL	G	G	-	rs151326455		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:151550401delG	ENST00000483843.2	-	0	439				RP11-454C18.2_ENST00000475855.1_RNA																							gcaaaaaattggGGGGGGGGT	0.363													2	4	---	---	---	---					
AADACL2-AS1	101928142	broad.mit.edu	37	3	151610206	151610206	+	RNA	DEL	T	T	-	rs76714123		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:151610206delT	ENST00000483843.2	-	0	439				RP11-454C18.2_ENST00000475855.1_RNA																							AAACGAGCCCTTTTTTTTTTT	0.308													3	4	---	---	---	---					
LINC00886	730091	broad.mit.edu	37	3	156469799	156469799	+	RNA	DEL	T	T	-	rs34818713		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:156469799delT	ENST00000472943.1	-	0	148					NR_038387.1																						CTCAGCTTTGTTTTGCCCTAG	0.428													6	2	---	---	---	---					
IL12A-AS1	101928376	broad.mit.edu	37	3	159724044	159724047	+	RNA	DEL	TTGC	TTGC	-	rs10531580		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:159724044_159724047delTTGC	ENST00000497452.1	-	0	822				CTD-2049J23.2_ENST00000462431.1_RNA																							tgcagaaaaattgcttgcttgctt	0.431													5	3	---	---	---	---					
MUC20	200958	broad.mit.edu	37	3	195452664	195452664	+	Frame_Shift_Del	DEL	C	C	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr3:195452664delC	ENST00000320736.6	+	3	803	c.677delC	c.(676-678)acfs	p.T226fs	MUC20_ENST00000447234.2_Frame_Shift_Del_p.T397fs|MUC20_ENST00000445522.2_Frame_Shift_Del_p.T362fs|MUC20_ENST00000436408.1_Frame_Shift_Del_p.T397fs	NM_001098516.1|NM_152673.2	NP_001091986.1|NP_689886.2	Q8N307	MUC20_HUMAN	mucin 20, cell surface associated	397	12 X 20 AA approximate tandem repeats of S-S-E-S-S-A-S-S-D-S-P-H-P-V-I-T-P-S-R-A.|Ser-rich.		Missing.		protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane				NS(1)|breast(1)|endometrium(3)|kidney(3)|large_intestine(3)|lung(4)|skin(4)|stomach(3)|upper_aerodigestive_tract(1)	23	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		CCAGTCATCACCCCCTCATGG	0.587													4	4	---	---	---	---					
RP11-213G21.2	0	broad.mit.edu	37	4	38568082	38568083	+	RNA	DEL	AG	AG	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:38568082_38568083delAG	ENST00000512170.1	+	0	114																											TATACgagacagagagagagag	0.386													2	4	---	---	---	---					
RP11-227F19.1	0	broad.mit.edu	37	4	41778028	41778031	+	RNA	DEL	GTGT	GTGT	-	rs3041497		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:41778028_41778031delGTGT	ENST00000508038.1	+	0	294																											cctgtgcagggtgtgtgtgtgtgt	0.363													2	4	---	---	---	---					
RP11-63A11.1	0	broad.mit.edu	37	4	42359272	42359274	+	RNA	DEL	GAG	GAG	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:42359272_42359274delGAG	ENST00000503321.1	-	0	59				RP11-63A11.1_ENST00000508911.1_RNA|RP11-63A11.1_ENST00000515392.1_RNA																							gagggagggagaggagaggggga	0.493													2	4	---	---	---	---					
RP11-16N2.1	0	broad.mit.edu	37	4	62011627	62011628	+	RNA	INS	-	-	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:62011627_62011628insG	ENST00000506379.1	+	0	348																											cataaaaacttggggggataca	0.332													2	4	---	---	---	---					
RP11-567N4.2	0	broad.mit.edu	37	4	76319679	76319679	+	RNA	DEL	A	A	-	rs66890082		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:76319679delA	ENST00000510744.1	-	0	332																											AAGTTGCAGTAAAAACTGGCA	0.383													3	3	---	---	---	---					
LOC100507053	100507053	broad.mit.edu	37	4	100181716	100181718	+	RNA	DEL	TTT	TTT	-	rs70955990		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:100181716_100181718delTTT	ENST00000500358.2	+	0	3789				RP11-696N14.1_ENST00000509295.1_RNA|RP11-696N14.1_ENST00000506160.1_RNA|RP11-696N14.1_ENST00000506454.1_RNA	NR_037884.1																						cctttttttcttttttttttttt	0.433													3	3	---	---	---	---					
LOC101929353	101929353	broad.mit.edu	37	4	101134287	101134288	+	RNA	INS	-	-	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:101134287_101134288insC	ENST00000515782.1	+	0	300																											TGAGTTTTGTTCCCCCCCACCC	0.366													3	3	---	---	---	---					
RP11-556I14.1	0	broad.mit.edu	37	4	105935214	105935214	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:105935214delA	ENST00000506386.1	+	0	71																											AGAATTGCTTAAAAAAAAACT	0.299													2	4	---	---	---	---					
IL21-AS1	100996941	broad.mit.edu	37	4	123552807	123552808	+	RNA	INS	-	-	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:123552807_123552808insC	ENST00000417927.1	+	0	2797																											gactaatctagccccctattta	0.396													2	4	---	---	---	---					
RP11-125O18.1	0	broad.mit.edu	37	4	128194142	128194143	+	RNA	INS	-	-	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:128194142_128194143insG	ENST00000504050.1	-	0	368																											tggctgcaactggggggtcctc	0.515													2	4	---	---	---	---					
LINC01256	104355285	broad.mit.edu	37	4	133537998	133537999	+	RNA	INS	-	-	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:133537998_133537999insG	ENST00000513270.1	+	0	188																											tgttcattgcaggggcatggat	0.396													2	4	---	---	---	---					
RP11-526A4.1	0	broad.mit.edu	37	4	150508730	150508731	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:150508730_150508731insA	ENST00000511993.1	-	0	1181																											TTCTAACAAACAAAAAAAAATA	0.307													2	4	---	---	---	---					
RP11-597D13.9	0	broad.mit.edu	37	4	159118002	159118002	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:159118002delT	ENST00000503611.1	+	0	969				RP11-597D13.9_ENST00000505532.1_RNA|RP11-597D13.9_ENST00000509463.1_RNA|RP11-597D13.9_ENST00000508752.1_RNA																							TTACCCCAAATTTACCTAGGT	0.299													2	4	---	---	---	---					
LOC728339	728339	broad.mit.edu	37	4	190817143	190817144	+	RNA	INS	-	-	TCAAA	rs146980504		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr4:190817143_190817144insTCAAA	ENST00000511785.1	-	0	231																											TTTCAATTTGCTCAAACTATTC	0.327													2	4	---	---	---	---					
RP11-445O3.2	0	broad.mit.edu	37	5	4697705	4697706	+	RNA	INS	-	-	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:4697705_4697706insT	ENST00000507435.1	-	0	429																											ttttgctggaattttttttttt	0.411													4	7	---	---	---	---					
RP11-122F24.1	0	broad.mit.edu	37	5	6937548	6937548	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:6937548delT	ENST00000512838.1	+	0	69																											CCTTTTGGGATTTTTTTCAGC	0.378													2	4	---	---	---	---					
LOC101929454	101929454	broad.mit.edu	37	5	15220313	15220313	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:15220313delA	ENST00000511443.1	-	0	247																											acaaacaaacaaaaaacccct	0.328													2	4	---	---	---	---					
LOC285696	285696	broad.mit.edu	37	5	17144741	17144741	+	RNA	DEL	A	A	-	rs5866240		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:17144741delA	ENST00000399760.2	-	0	1068					NR_027253.1																						AAAGTCAGAGAAAAAAGCATA	0.398													6	2	---	---	---	---					
GUSBP1	728411	broad.mit.edu	37	5	21521168	21521168	+	RNA	DEL	A	A	-	rs11367557		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:21521168delA	ENST00000607545.1	+	0	314					NR_027026.1																						gcccttttgcaggctgcagac	0.448													2	4	---	---	---	---					
GUSBP1	728411	broad.mit.edu	37	5	21539615	21539616	+	RNA	INS	-	-	TA	rs71310756	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:21539615_21539616insTA	ENST00000607545.1	+	0	314					NR_027026.1																						aacagaaagacatactgcctga	0.376													8	4	---	---	---	---					
RP11-804N13.1	0	broad.mit.edu	37	5	21699600	21699600	+	RNA	DEL	T	T	-	rs77966192		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:21699600delT	ENST00000522350.1	+	0	476																											AAAAGACATCTTTTTTTTTTT	0.413													2	4	---	---	---	---					
CTD-2066L21.3	0	broad.mit.edu	37	5	33278146	33278147	+	RNA	INS	-	-	A	rs34613721	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:33278146_33278147insA	ENST00000510327.1	-	0	179																											AGTAGCACATCTAAATTTGCAT	0.297													5	7	---	---	---	---					
LOC101928858	101928858	broad.mit.edu	37	5	67011849	67011849	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:67011849delT	ENST00000506819.1	-	0	152																		p.0?(1)									tctgtaaaaattttttttttt	0.468													2	4	---	---	---	---					
MEF2C-AS1	101929423	broad.mit.edu	37	5	88752102	88752102	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:88752102delT	ENST00000508742.1	+	0	86				MEF2C-AS1_ENST00000514092.1_RNA																							TCATTGATACTTTTTTTCCCC	0.328													2	4	---	---	---	---					
GPR98	84059	broad.mit.edu	37	5	89923211	89923211	+	Frame_Shift_Del	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:89923211delG	ENST00000405460.2	+	7	952	c.856delG	c.(856-858)gafs	p.G286fs		NM_032119.3	NP_115495.3	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98	286					cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			NS(4)|breast(7)|central_nervous_system(6)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(3)|kidney(18)|large_intestine(46)|liver(2)|lung(80)|ovary(12)|pancreas(5)|prostate(1)|skin(50)|stomach(7)|upper_aerodigestive_tract(8)|urinary_tract(6)	269		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGTAGTTCGTGGAAAGGACAA	0.393													39	57	---	---	---	---					
LINC01340	102546227	broad.mit.edu	37	5	96973775	96973775	+	RNA	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:96973775delG	ENST00000504012.1	+	0	159																											cttcagcactggggattacaa	0.418													2	4	---	---	---	---					
LOC102546299	102546299	broad.mit.edu	37	5	164443367	164443368	+	RNA	DEL	TT	TT	-	rs60516522		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr5:164443367_164443368delTT	ENST00000519570.1	+	0	451				CTC-340A15.2_ENST00000522646.1_RNA|CTC-340A15.2_ENST00000522303.1_RNA|CTC-340A15.2_ENST00000519267.1_RNA																							ATCCATTTGAtttttttttttt	0.391													2	4	---	---	---	---					
RP11-716O23.1	0	broad.mit.edu	37	6	11427519	11427520	+	RNA	INS	-	-	CA	rs149966363	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:11427519_11427520insCA	ENST00000419796.1	+	0	230																											catacacactccacacacacac	0.510													4	2	---	---	---	---					
RP3-448I9.1	0	broad.mit.edu	37	6	14395029	14395030	+	RNA	INS	-	-	C	rs112622509	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:14395029_14395030insC	ENST00000434947.1	+	0	119																											tggaagctccgccccccttctc	0.530													8	6	---	---	---	---					
RP11-686D16.1	0	broad.mit.edu	37	6	19315136	19315137	+	RNA	INS	-	-	G	rs71923580	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:19315136_19315137insG	ENST00000443504.1	-	0	104																											tgtgttgagttgggcgatagca	0.391													5	10	---	---	---	---					
RP1-209A6.1	0	broad.mit.edu	37	6	22825044	22825044	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:22825044delA	ENST00000420572.2	-	0	197																											TAAAGCATGTAAGAAAATGTG	0.274													2	4	---	---	---	---					
GUSBP2	387036	broad.mit.edu	37	6	26854378	26854379	+	RNA	INS	-	-	AGG	rs55649351		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:26854378_26854379insAGG	ENST00000463434.1	-	0	282																											gagggtgaggcagaactgtttg	0.530													3	5	---	---	---	---					
LOC101927189	101927189	broad.mit.edu	37	6	53808745	53808746	+	RNA	INS	-	-	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:53808745_53808746insT	ENST00000431554.2	+	0	232																											ATTCCCAGTAATTTTTGCCAAA	0.327													2	4	---	---	---	---					
RP1-90L14.1	0	broad.mit.edu	37	6	85142879	85142879	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:85142879delT	ENST00000454981.1	-	0	289																											GTGTGACATGTTTTATTTTAT	0.393													2	4	---	---	---	---					
RP11-436D23.1	0	broad.mit.edu	37	6	98418797	98418797	+	RNA	DEL	T	T	-	rs34915033		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:98418797delT	ENST00000607823.1	+	0	267																											CCTTTCAGTATTTTTTAAGTA	0.294													9	0	---	---	---	---					
RP1-137D17.1	0	broad.mit.edu	37	6	169782154	169782155	+	RNA	INS	-	-	GGGG	rs10681438	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr6:169782154_169782155insGGGG	ENST00000440168.1	-	0	185																											tgtgtatgtgtggtgtgtgtgt	0.416													2	4	---	---	---	---					
LOC101927668	101927668	broad.mit.edu	37	7	19997342	19997345	+	RNA	DEL	GTGT	GTGT	-	rs80087994		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:19997342_19997345delGTGT	ENST00000449573.1	-	0	535																											AATtgtgtgcgtgtgtgtgtgtgt	0.353													2	4	---	---	---	---					
JAZF1-AS1	100128081	broad.mit.edu	37	7	28264832	28264833	+	RNA	INS	-	-	AC	rs10635411	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:28264832_28264833insAC	ENST00000455963.1	+	0	301				JAZF1-AS1_ENST00000436758.1_RNA																							tgcacacacagacacacacaca	0.470													4	3	---	---	---	---					
NPSR1-AS1	404744	broad.mit.edu	37	7	34489399	34489402	+	RNA	DEL	ACAC	ACAC	-	rs148681510		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:34489399_34489402delACAC	ENST00000419766.1	-	0	310					NR_033664.1|NR_033665.1																						TCTACTTTCTacacacacacacac	0.368													3	3	---	---	---	---					
AC004901.1	0	broad.mit.edu	37	7	46982753	46982753	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:46982753delA	ENST00000433337.1	-	0	237																											ctaaaaatacaaaaaaaatag	0.527													2	4	---	---	---	---					
TYW1B	441250	broad.mit.edu	37	7	72066737	72066737	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:72066737delA	ENST00000438125.1	-	0	1399							Q6NUM6	TYW1B_HUMAN	tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)						tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity										ttgctaagtgaaaaaaaaaaa	0.294													2	4	---	---	---	---					
STEAP2-AS1	100874100	broad.mit.edu	37	7	89733144	89733144	+	RNA	DEL	T	T	-	rs3066768		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:89733144delT	ENST00000478318.2	-	0	424																											TCTTCAGTAGTTTTTTTTTTT	0.343													6	2	---	---	---	---					
LOC102724339	102724339	broad.mit.edu	37	7	106220929	106220930	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:106220929_106220930insA	ENST00000591803.1	-	0	155																											tctctatagggaaggggtgggg	0.579													2	4	---	---	---	---					
LINC01393	102724386	broad.mit.edu	37	7	114732396	114732396	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:114732396delA	ENST00000435981.1	+	0	152				AC068610.5_ENST00000419883.1_RNA																							TGTTTTTAGTAAAAAATGGTG	0.274													2	4	---	---	---	---					
LINC01392	104355291	broad.mit.edu	37	7	114782776	114782776	+	RNA	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:114782776delG	ENST00000419883.1	-	0	314																											CCCAGAAGCTGGGGTAGGGAG	0.373													2	4	---	---	---	---					
AC024084.1	0	broad.mit.edu	37	7	135763086	135763087	+	RNA	INS	-	-	A	rs34027137		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:135763086_135763087insA	ENST00000440744.2	+	0	174																											actccttctctaaaaaaaaaaa	0.475													4	4	---	---	---	---					
AC009784.3	0	broad.mit.edu	37	7	135883029	135883030	+	RNA	INS	-	-	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:135883029_135883030insT	ENST00000445293.2	+	0	392																											tttcttctttgttttttttttt	0.302													2	4	---	---	---	---					
LOC285889	285889	broad.mit.edu	37	7	156233362	156233362	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr7:156233362delA	ENST00000436670.1	-	0	1491					NR_038232.1																						CTCTACACCCAGGCGGCGATT	0.632													2	4	---	---	---	---					
RP11-156K13.1	0	broad.mit.edu	37	8	17689717	17689717	+	RNA	DEL	C	C	-	rs34487954		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:17689717delC	ENST00000522768.1	+	0	398																											catttcaacacgagcgtcgga	0.547													3	4	---	---	---	---					
RP11-459E5.1	0	broad.mit.edu	37	8	22556372	22556372	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:22556372delT	ENST00000523627.1	+	0	164																											AAAGGGGTGGTGGATGTGGGT	0.512													2	4	---	---	---	---					
FAM183CP	286135	broad.mit.edu	37	8	29791468	29791469	+	RNA	INS	-	-	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:29791468_29791469insC	ENST00000521245.1	+	0	1116					NR_024473.1																						ACAGCCCCAGGCCCCCCAAACA	0.520													2	4	---	---	---	---					
RP11-89M20.2	0	broad.mit.edu	37	8	35924540	35924540	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:35924540delT	ENST00000523342.1	-	0	32																											ctcaaattgattagggtatgt	0.353													2	4	---	---	---	---					
ADAM3A	1587	broad.mit.edu	37	8	39325910	39325911	+	RNA	INS	-	-	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:39325910_39325911insT	ENST00000490268.2	-	0	2100					NR_073423.1																						ttacttggttatttttgtcgct	0.361													2	4	---	---	---	---					
RP11-359E19.1	0	broad.mit.edu	37	8	39963678	39963679	+	RNA	DEL	GA	GA	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:39963678_39963679delGA	ENST00000524098.1	+	0	134																											gtatgtgtctgagagagagaga	0.371													2	4	---	---	---	---					
RP11-388G22.1	0	broad.mit.edu	37	8	58557323	58557323	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:58557323delT	ENST00000520426.1	-	0	273																											cttcttcgtcttttttgatct	0.358													2	4	---	---	---	---					
LINC01592	100505718	broad.mit.edu	37	8	70013112	70013121	+	RNA	DEL	CACACACACA	CACACACACA	-	rs57859387		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:70013112_70013121delCACACACACA	ENST00000518540.1	-	0	193					NR_039986.1																						aaacacactccacacacacacacacacaca	0.395													2	4	---	---	---	---					
LINC00534	100874052	broad.mit.edu	37	8	91310189	91310190	+	RNA	INS	-	-	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:91310189_91310190insC	ENST00000523406.1	+	0	300					NR_051989.1																						ttaggatctagcccctgaggac	0.475													2	4	---	---	---	---					
RP11-122C21.1	0	broad.mit.edu	37	8	92665991	92665992	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:92665991_92665992insA	ENST00000518416.1	-	0	415																											GTTTATTATAGAAAAAAAATGA	0.347													2	4	---	---	---	---					
LINC00535	642924	broad.mit.edu	37	8	94665304	94665305	+	RNA	INS	-	-	GGTTTTTTTGTTT	rs59771453	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:94665304_94665305insGGTTTTTTTGTTT	ENST00000501400.1	-	0	948					NR_033858.1																						tgattggccagggtttttttgt	0.446													3	2	---	---	---	---					
KB-1458E12.1	0	broad.mit.edu	37	8	99387499	99387500	+	RNA	INS	-	-	AA	rs10659549	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:99387499_99387500insAA	ENST00000518704.1	-	0	111																											aaaaaaaaaacaaaaaaaaaca	0.376													2	4	---	---	---	---					
CCDC26	137196	broad.mit.edu	37	8	130579849	130579850	+	RNA	INS	-	-	AC			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr8:130579849_130579850insAC	ENST00000446592.3	-	0	312																											ATCAAAACAAAACACACACACA	0.302													2	4	---	---	---	---					
RP11-764K9.1	0	broad.mit.edu	37	9	68409070	68409070	+	RNA	DEL	T	T	-	rs62545660	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr9:68409070delT	ENST00000417843.2	-	0	67																											CCCTCTTTCCTCCTTTTGTCT	0.617													3	6	---	---	---	---					
LOC101927502	101927502	broad.mit.edu	37	9	84359835	84359835	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr9:84359835delT	ENST00000437181.1	+	0	247																											acctagctaattttttttttg	0.532													2	4	---	---	---	---					
LINC01501	340515	broad.mit.edu	37	9	93338066	93338067	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr9:93338066_93338067insA	ENST00000449990.1	-	0	217					NR_034157.1																						aaaatggagagaaaaaaaaaca	0.401													3	6	---	---	---	---					
LOC101928438	101928438	broad.mit.edu	37	9	102426700	102426701	+	RNA	DEL	TG	TG	-	rs7036025		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr9:102426700_102426701delTG	ENST00000427039.1	-	0	319																											tgtgtgtacatgtgtgtgtgtg	0.361													2	4	---	---	---	---					
RP11-672F9.1	0	broad.mit.edu	37	10	38562296	38562297	+	RNA	INS	-	-	CC			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr10:38562296_38562297insCC	ENST00000450980.1	+	0	144																											tgcctctctctctcgctctacc	0.554													3	5	---	---	---	---					
RP11-95I16.2	0	broad.mit.edu	37	10	122727645	122727646	+	RNA	INS	-	-	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr10:122727645_122727646insG	ENST00000414774.1	-	0	49																											CCTGTGACTGTGGGGGCTGCtt	0.505													2	4	---	---	---	---					
DMBT1P1	375940	broad.mit.edu	37	10	124536952	124536953	+	RNA	DEL	AC	AC	-	rs67342166		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr10:124536952_124536953delAC	ENST00000439464.2	+	0	1229					NR_003570.1																						gtGGAGGTGAacacacacacac	0.376													2	4	---	---	---	---					
RP11-282I1.1	0	broad.mit.edu	37	10	125232654	125232654	+	RNA	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr10:125232654delG	ENST00000448347.1	+	0	746																											TGCAAGGACTGACCTACAAAA	0.483													2	4	---	---	---	---					
SPON1	10418	broad.mit.edu	37	11	14082493	14082494	+	RNA	INS	-	-	A	rs76301841	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:14082493_14082494insA	ENST00000310358.7	+	0	1017							Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein						cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding			NS(1)|endometrium(1)|large_intestine(5)|lung(11)|prostate(2)|upper_aerodigestive_tract(1)	21				Epithelial(150;0.00898)		tctagtttggtaaaaaaaaagg	0.356													4	2	---	---	---	---					
RP11-222N13.1	0	broad.mit.edu	37	11	15941988	15941988	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:15941988delA	ENST00000530418.1	+	0	217																											acacggggagaaaagggaagg	0.522													2	4	---	---	---	---					
BDNF-AS	497258	broad.mit.edu	37	11	27612843	27612844	+	RNA	INS	-	-	TGAA	rs139249736	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:27612843_27612844insTGAA	ENST00000499008.3	+	0	213				BDNF-AS_ENST00000499568.2_RNA|BDNF-AS_ENST00000532965.1_RNA|BDNF-AS_ENST00000530686.1_RNA|BDNF-AS_ENST00000500662.2_RNA|BDNF-AS_ENST00000501176.2_RNA|BDNF-AS_ENST00000502161.2_RNA	NR_002832.2																						taaatgtttgCtgaatgaatga	0.401													3	6	---	---	---	---					
BDNF-AS	497258	broad.mit.edu	37	11	27658045	27658045	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:27658045delT	ENST00000499008.3	+	0	213				BDNF-AS_ENST00000499568.2_RNA|BDNF-AS_ENST00000532965.1_RNA|BDNF-AS_ENST00000530686.1_RNA|BDNF-AS_ENST00000500662.2_RNA|BDNF-AS_ENST00000501176.2_RNA|BDNF-AS_ENST00000502161.2_RNA	NR_002832.2																						ggtaagcagcttttttttttt	0.328													2	4	---	---	---	---					
OR5B12	390191	broad.mit.edu	37	11	58207392	58207392	+	Frame_Shift_Del	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr11:58207392delT	ENST00000302572.2	-	1	254	c.233delA	c.(232-234)agfs	p.K78fs		NM_001004733.2	NP_001004733.1	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B, member 12	78					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(6)|liver(1)|lung(28)|ovary(1)|prostate(3)|skin(1)	40	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CACCATCACCTTGGGAGTGAC	0.443													31	70	---	---	---	---					
LOC102724020	102724020	broad.mit.edu	37	12	10180117	10180124	+	RNA	DEL	CTGCCTGC	CTGCCTGC	-	rs11268841		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:10180117_10180124delCTGCCTGC	ENST00000544225.1	-	0	248																											TGCAATAAAActgcctgcctgcctgcct	0.500													3	3	---	---	---	---					
RP11-871F6.3	0	broad.mit.edu	37	12	17696037	17696037	+	RNA	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:17696037delG	ENST00000540399.1	-	0	888																											tgtccaggctggagtgcagtg	0.478													2	4	---	---	---	---					
KRT73-AS1	100127967	broad.mit.edu	37	12	52997258	52997258	+	RNA	DEL	C	C	-	rs60841675		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:52997258delC	ENST00000551089.1	+	0	101																											ACACAAGTGACACATGCAGAT	0.493													5	1	---	---	---	---					
RP11-588H23.3	0	broad.mit.edu	37	12	70873821	70873821	+	RNA	DEL	A	A	-	rs35208288		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:70873821delA	ENST00000548687.1	+	0	243				RP11-588H23.3_ENST00000551438.1_RNA|RP11-588H23.3_ENST00000549616.1_RNA|RP11-588H23.3_ENST00000549460.1_RNA|RP11-588H23.3_ENST00000549359.1_RNA|RP11-588H23.3_ENST00000548924.1_RNA																							taagttacacaagagctgatg	0.468													5	1	---	---	---	---					
RP11-13A1.3	0	broad.mit.edu	37	12	89528858	89528859	+	RNA	INS	-	-	A	rs145267882	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:89528858_89528859insA	ENST00000549278.1	-	0	144																											ATGATACAAACAAAAAAAAATG	0.337													7	2	---	---	---	---					
RP11-541G9.1	0	broad.mit.edu	37	12	97439521	97439521	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:97439521delA	ENST00000552238.1	+	0	39				RP11-397H6.1_ENST00000549896.1_lincRNA																							CCAGCCCCGCAAGTCTCATGG	0.398													2	4	---	---	---	---					
RP11-690J15.1	0	broad.mit.edu	37	12	98655765	98655766	+	RNA	INS	-	-	G	rs7312468	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:98655765_98655766insG	ENST00000548344.1	-	0	36																											AAGCCCTGACTACCCCCCGGAG	0.500													2	4	---	---	---	---					
CASC18	101929110	broad.mit.edu	37	12	106106851	106106852	+	RNA	INS	-	-	A	rs77231514		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:106106851_106106852insA	ENST00000548557.1	+	0	54																											gacctcacctcaaaaaaaaaaa	0.480													3	4	---	---	---	---					
RP11-357K6.3	0	broad.mit.edu	37	12	119301193	119301196	+	RNA	DEL	TGAA	TGAA	-	rs35024448		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:119301193_119301196delTGAA	ENST00000544515.1	-	0	447																											aagtaattgCtgaatgaatgaatg	0.392													3	4	---	---	---	---					
FAM101A	144347	broad.mit.edu	37	12	124678037	124678038	+	RNA	DEL	TG	TG	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:124678037_124678038delTG	ENST00000540762.1	+	0	444																											ACATTTTTGCTGTGTGTGTGTG	0.460													2	4	---	---	---	---					
RP4-765H13.1	0	broad.mit.edu	37	12	126680404	126680405	+	RNA	INS	-	-	AG	rs10642303	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr12:126680404_126680405insAG	ENST00000536505.1	+	0	230																											TATCAACAAAAAGAGGACTTTT	0.391													3	2	---	---	---	---					
POMP	51371	broad.mit.edu	37	13	29238702	29238703	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr13:29238702_29238703insG	ENST00000380842.4	+	3	239_240	c.158_159insG	c.(157-159)aaafs	p.K53fs	POMP_ENST00000460403.1_3'UTR	NM_015932.5	NP_057016.1	Q9Y244	POMP_HUMAN	proteasome maturation protein	53					proteasome assembly	cytosol|endoplasmic reticulum|membrane|microsome|nucleus|proteasome complex				endometrium(2)|kidney(1)|large_intestine(1)	4		Lung SC(185;0.0367)		all cancers(112;0.141)|OV - Ovarian serous cystadenocarcinoma(117;0.216)		TTATCAGAAAAAAATGTAAGTA	0.238													2	4	---	---	---	---					
LINC00383	103689913	broad.mit.edu	37	13	69831322	69831323	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr13:69831322_69831323insA	ENST00000433664.1	+	0	103																											aaccacacattaaaaaatcatt	0.287													2	4	---	---	---	---					
LINC00348	100885781	broad.mit.edu	37	13	71598576	71598576	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr13:71598576delT	ENST00000428761.1	+	0	108					NR_047699.1																						gtaccagctgttTTTTTTTCT	0.328													2	4	---	---	---	---					
RNF219-AS1	100874222	broad.mit.edu	37	13	78548731	78548732	+	RNA	DEL	TC	TC	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr13:78548731_78548732delTC	ENST00000607862.1	+	0	230																											ctcttctctgtctctctctctc	0.406													2	4	---	---	---	---					
RNF219-AS1	100874222	broad.mit.edu	37	13	78627585	78627586	+	RNA	INS	-	-	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr13:78627585_78627586insT	ENST00000607862.1	+	0	230																											acaacacaccctttttgtccaa	0.431													2	4	---	---	---	---					
METTL21EP	121952	broad.mit.edu	37	13	103542438	103542439	+	RNA	DEL	AC	AC	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr13:103542438_103542439delAC	ENST00000605100.1	+	0	194					NR_026965.1																						TCTAAGCAGGacacacacacac	0.441													2	4	---	---	---	---					
TMCO3	55002	broad.mit.edu	37	13	114149925	114149925	+	Frame_Shift_Del	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr13:114149925delG	ENST00000434316.2	+	2	388	c.29delG	c.(28-30)tgfs	p.W10fs	TMCO3_ENST00000474393.1_3'UTR|TMCO3_ENST00000375391.1_Frame_Shift_Del_p.W10fs	NM_017905.4	NP_060375.4	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	10						integral to membrane	solute:hydrogen antiporter activity			NS(1)|endometrium(4)|large_intestine(9)|liver(1)|lung(8)|prostate(1)|stomach(1)	25	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			AGCTTCTTCTGGGTGCTGTTT	0.632													25	16	---	---	---	---					
RP11-754I20.1	0	broad.mit.edu	37	14	19111820	19111820	+	RNA	DEL	A	A	-	rs112121452		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:19111820delA	ENST00000553170.1	+	0	71																											AAATGAATACAACAGAATAGA	0.333													3	4	---	---	---	---					
LOC101929735	101929735	broad.mit.edu	37	14	22874955	22874955	+	RNA	DEL	T	T	-	rs71421107		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:22874955delT	ENST00000514473.2	-	0	225				AE000661.37_ENST00000545670.1_RNA|AE000661.37_ENST00000535351.1_RNA|AE000661.37_ENST00000541008.1_RNA																							tctttctttcttttttttttt	0.418													3	4	---	---	---	---					
RP11-1103G16.1	0	broad.mit.edu	37	14	30932687	30932687	+	RNA	DEL	A	A	-	rs11324189		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:30932687delA	ENST00000548631.1	-	0	148				RP11-1103G16.1_ENST00000552511.1_RNA|RP11-1103G16.1_ENST00000550680.1_RNA																							catctcaaagaaaaaaaaaaa	0.493													2	4	---	---	---	---					
CTD-2058B24.2	0	broad.mit.edu	37	14	38613414	38613414	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:38613414delT	ENST00000554687.1	-	0	200																											CTTTCAGCTCTTTAAGATCTC	0.393													2	4	---	---	---	---					
RP11-72M17.1	0	broad.mit.edu	37	14	66752427	66752428	+	RNA	INS	-	-	CACA	rs35579291	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:66752427_66752428insCACA	ENST00000556874.1	-	0	643																											taacagaataccactgggcaat	0.426													3	3	---	---	---	---					
RP11-666E17.1	0	broad.mit.edu	37	14	82348564	82348564	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:82348564delA	ENST00000554814.1	+	0	315																											actccatcacaaaaaaaaaaG	0.483													2	4	---	---	---	---					
RP11-789A21.1	0	broad.mit.edu	37	14	85693518	85693518	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr14:85693518delT	ENST00000556016.1	-	0	209																											TATTACACCCTCCCCCATCTG	0.413													2	4	---	---	---	---					
HERC2P3	283755	broad.mit.edu	37	15	20602750	20602751	+	RNA	INS	-	-	A	rs149106155		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:20602750_20602751insA	ENST00000428453.1	-	0	4041																				central_nervous_system(1)|endometrium(11)|kidney(2)|large_intestine(1)|lung(14)|pancreas(1)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	35						ttttacatgtgaaaaaataggc	0.322													7	2	---	---	---	---					
LOC101927079	101927079	broad.mit.edu	37	15	22315641	22315642	+	RNA	INS	-	-	A	rs148598371	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:22315641_22315642insA	ENST00000558896.1	+	0	99																											gttggtttgttatactgttcgc	0.490													2	4	---	---	---	---					
LOC101927079	101927079	broad.mit.edu	37	15	22373440	22373441	+	RNA	INS	-	-	TTTC	rs142435459	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:22373440_22373441insTTTC	ENST00000558896.1	+	0	972																											TTTTTtttccttttctttcttt	0.436													2	4	---	---	---	---					
RP11-624L4.1	0	broad.mit.edu	37	15	39647140	39647140	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:39647140delT	ENST00000559318.1	-	0	408				RP11-624L4.1_ENST00000560484.1_RNA|RP11-624L4.1_ENST00000558209.1_RNA																							tgatgactgcttttttggttt	0.378													2	4	---	---	---	---					
PIGB	9488	broad.mit.edu	37	15	55631503	55631504	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:55631503_55631504delTT	ENST00000164305.5	+	7	1124_1125	c.833_834delTT	c.(832-834)afs	p.I278fs	PIGB_ENST00000539642.1_Frame_Shift_Del_p.I83fs	NM_004855.4	NP_004846.4	Q92521	PIGB_HUMAN	phosphatidylinositol glycan anchor biosynthesis, class B	278					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	integral to membrane|intrinsic to endoplasmic reticulum membrane	glycolipid mannosyltransferase activity			endometrium(3)|kidney(1)|large_intestine(2)|lung(3)|ovary(1)|prostate(1)	11				all cancers(107;0.0255)		ATTGATCGTATTTTTTTTGGCC	0.282													2	4	---	---	---	---					
ADAMTS7	11173	broad.mit.edu	37	15	79059794	79059795	+	Frame_Shift_Ins	INS	-	-	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:79059794_79059795insG	ENST00000388820.4	-	18	2995_2996	c.2785_2786insC	c.(2785-2787)gccfs	p.A929fs	ADAMTS7_ENST00000566303.1_Intron	NM_014272.3	NP_055087.2	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1 motif, 7	929	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			NS(1)|breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(2)|lung(23)|ovary(1)|prostate(8)|skin(9)	54						AGTAGGGGGCCGGGGAAGGTGT	0.703													2	4	---	---	---	---					
CTD-2034I4.1	0	broad.mit.edu	37	15	81768004	81768005	+	RNA	INS	-	-	G			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:81768004_81768005insG	ENST00000559211.1	+	0	98																											cctgcagaactgggagaaagta	0.515													2	4	---	---	---	---					
RP11-266O8.1	0	broad.mit.edu	37	15	93861691	93861691	+	RNA	DEL	T	T	-	rs76052495		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:93861691delT	ENST00000543286.1	+	0	421																											gtccagctaatttttttgtat	0.552													3	3	---	---	---	---					
LINC01579	283682	broad.mit.edu	37	15	94276844	94276845	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr15:94276844_94276845insA	ENST00000557481.2	-	0	1053				RP11-739G5.1_ENST00000554318.2_lincRNA																							tgtttttggccaaaaaaaagtc	0.332													2	4	---	---	---	---					
LOC101927009	101927009	broad.mit.edu	37	16	9469559	9469559	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr16:9469559delT	ENST00000564305.1	+	0	193																											ctagatggaatttttaataaa	0.373													2	4	---	---	---	---					
RP11-1166P10.6	0	broad.mit.edu	37	16	32094099	32094099	+	RNA	DEL	T	T	-	rs147968620		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr16:32094099delT	ENST00000566806.1	-	0	499																											TAAATGACAATGAATTTTTTT	0.388													3	3	---	---	---	---					
HERC2P4	100289574	broad.mit.edu	37	16	32118199	32118200	+	RNA	DEL	AT	AT	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr16:32118199_32118200delAT	ENST00000564145.1	-	0	456																											acaaaataacataaaccgggtg	0.386													3	6	---	---	---	---					
RP11-19N8.4	0	broad.mit.edu	37	16	33056628	33056629	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr16:33056628_33056629insA	ENST00000561541.1	-	0	291																											cACttttttttttattatactt	0.465													4	4	---	---	---	---					
LOC101927580	101927580	broad.mit.edu	37	16	60083075	60083076	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr16:60083075_60083076insA	ENST00000568279.1	+	0	1784_1785																											AAACCTGATTGAAAAAAACACA	0.317													2	4	---	---	---	---					
RP11-293N14.1	0	broad.mit.edu	37	16	76147675	76147675	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr16:76147675delT	ENST00000564561.1	-	0	262																											ATCAGTCTCCTTCTAATAGCA	0.328													2	4	---	---	---	---					
LOC100996425	100996425	broad.mit.edu	37	16	80884279	80884280	+	RNA	INS	-	-	T			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr16:80884279_80884280insT	ENST00000562231.1	-	0	91																											tttcatatacatttttttcata	0.287													2	4	---	---	---	---					
COX10-AS1	100874058	broad.mit.edu	37	17	13759879	13759880	+	RNA	DEL	CA	CA	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:13759879_13759880delCA	ENST00000577798.2	-	0	373				COX10-AS1_ENST00000602743.1_RNA|COX10-AS1_ENST00000582752.2_RNA																							aaaaccagagcacctcttctcc	0.446													3	3	---	---	---	---					
RP11-260A9.6	0	broad.mit.edu	37	17	25320420	25320420	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:25320420delA	ENST00000580686.1	-	0	117																											aaacaaggccaggggaggtgg	0.493													2	4	---	---	---	---					
RP11-640N20.6	0	broad.mit.edu	37	17	30423846	30423846	+	RNA	DEL	C	C	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:30423846delC	ENST00000358484.4	+	0	284																											TAATGTATTTCCCCCCATTTT	0.323													12	13	---	---	---	---					
ASIC2	40	broad.mit.edu	37	17	31618962	31618963	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:31618962_31618963insC	ENST00000225823.2	-	1	1043_1044	c.171_172insG	c.(169-174)ggggccfs	p.A58fs	ASIC2_ENST00000359872.6_Intron	NM_183377.1	NP_899233.1	Q16515	ACCN1_HUMAN	acid-sensing (proton-gated) ion channel 2	0					central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding									Amiloride(DB00594)	AGCGATGGCCGCCCCCTGCGGG	0.802													2	4	---	---	---	---					
FTSJ3	117246	broad.mit.edu	37	17	61901709	61901709	+	Frame_Shift_Del	DEL	G	G	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:61901709delG	ENST00000427159.2	-	11	1625	c.980delC	c.(979-981)gafs	p.A327fs		NM_017647.3	NP_060117.3	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3 (E. coli)	327					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			breast(2)|central_nervous_system(1)|endometrium(6)|large_intestine(6)|lung(9)|ovary(1)|prostate(1)|urinary_tract(1)	27						CAGTGCCTTTGCTTGTTCTTT	0.512													19	43	---	---	---	---					
LINC00511	400619	broad.mit.edu	37	17	70613499	70613500	+	RNA	DEL	TG	TG	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr17:70613499_70613500delTG	ENST00000581549.1	-	0	455					NR_033876.1																						cgtgtgtgcctgtgtgtgtgtg	0.436													2	4	---	---	---	---					
RP11-449D8.5	0	broad.mit.edu	37	18	22502537	22502538	+	RNA	INS	-	-	A			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr18:22502537_22502538insA	ENST00000582650.1	+	0	235																											ttaacaaaaacaaaaacaaaca	0.426													2	4	---	---	---	---					
FASTKD5	60493	broad.mit.edu	37	20	3128000	3128001	+	Frame_Shift_Ins	INS	-	-	C			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:3128000_3128001insC	ENST00000380266.3	-	2	2037_2038	c.1716_1717insG	c.(1714-1719)ggcccafs	p.GP572fs	UBOX5_ENST00000217173.2_Intron|UBOX5-AS1_ENST00000446537.1_RNA|UBOX5_ENST00000348031.2_Intron	NM_021826.4	NP_068598.1	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	572					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			breast(2)|endometrium(2)|large_intestine(2)|lung(8)|prostate(2)|skin(1)|urinary_tract(2)	19						ACGTACTGGGGCCCCCCCAGCA	0.436													7	90	---	---	---	---					
SNAP25-AS1	100131208	broad.mit.edu	37	20	10186932	10186932	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:10186932delT	ENST00000603542.1	-	0	518				SNAP25-AS1_ENST00000421143.2_RNA|SNAP25-AS1_ENST00000451151.1_RNA|SNAP25-AS1_ENST00000426491.1_RNA|SNAP25-AS1_ENST00000453544.1_RNA|SNAP25-AS1_ENST00000605592.1_RNA	NR_040710.1																						cacatttaacttttttttatt	0.269													2	4	---	---	---	---					
RP11-103J8.1	0	broad.mit.edu	37	20	10751921	10751921	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:10751921delA	ENST00000605292.1	+	0	98																											TGGAGGGTGTAATAGGAATAT	0.353													2	4	---	---	---	---					
RP11-102J14.1	0	broad.mit.edu	37	20	12292178	12292178	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:12292178delT	ENST00000442389.1	-	0	359																											CTAATATTCATTTAAAAGCAT	0.323													2	4	---	---	---	---					
RP4-610C12.1	0	broad.mit.edu	37	20	29591671	29591673	+	RNA	DEL	AGA	AGA	-	rs73620377		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:29591671_29591673delAGA	ENST00000432067.1	-	0	152																											CAAAAGCAGCAGAAGTTAGCTTT	0.424													2	4	---	---	---	---					
RP5-1121H13.4	0	broad.mit.edu	37	20	40656892	40656893	+	RNA	DEL	CA	CA	-	rs60009802		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:40656892_40656893delCA	ENST00000431589.1	+	0	131																											cagacacatgcacacacacaca	0.436													2	4	---	---	---	---					
RP13-379L11.1	0	broad.mit.edu	37	20	56646715	56646716	+	RNA	INS	-	-	CAC	rs138176102	by1000genomes	TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr20:56646715_56646716insCAC	ENST00000441277.2	-	0	340																											ctcaggcaaaacaccaccacca	0.535													4	3	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11063160	11063161	+	RNA	INS	-	-	A	rs147852817		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr21:11063160_11063161insA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		aaacgctatccaaaaaatgcag	0.282													5	3	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11076555	11076557	+	RNA	DEL	TAA	TAA	-	rs151275384		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr21:11076555_11076557delTAA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		tctaatttgttaataataatata	0.320													4	6	---	---	---	---					
BAGE2	85319	broad.mit.edu	37	21	11093710	11093711	+	RNA	INS	-	-	A	rs71247141		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr21:11093710_11093711insA	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		tcAAAACCTCCAAAAAACACTG	0.337													5	3	---	---	---	---					
MIR99AHG	388815	broad.mit.edu	37	21	17459722	17459722	+	RNA	DEL	T	T	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr21:17459722delT	ENST00000458468.1	+	0	312					NR_027790.1																						ATTCCCTTTGTTTTATACTTC	0.244													2	4	---	---	---	---					
AP001604.3	0	broad.mit.edu	37	21	28753909	28753909	+	RNA	DEL	A	A	-			TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr21:28753909delA	ENST00000420186.2	-	0	331				AP001605.4_ENST00000447384.1_lincRNA																							AGTAAGAAAGAAAAAAAAAAG	0.478													3	5	---	---	---	---					
AF064860.5	0	broad.mit.edu	37	21	41054113	41054114	+	RNA	INS	-	-	A	rs34341100		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chr21:41054113_41054114insA	ENST00000416555.1	+	0	220																											catattgtgctaaaaaaaaaaa	0.327													4	3	---	---	---	---					
RP1-154K9.2	0	broad.mit.edu	37	X	42271394	42271395	+	RNA	INS	-	-	T	rs111695385		TCGA-17-Z044-01A-01W-0746-08	TCGA-17-Z044-11A-01W-0746-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cb1aaeb8-0c6f-4266-968c-38a3823d85f6	f9297a4a-189f-4382-ba98-f35a12c499a7	g.chrX:42271394_42271395insT	ENST00000411879.1	+	0	193																											ttcccttaacattttttttcat	0.421													2	4	---	---	---	---					
