Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr1:16918653C>T	ENST00000430580.2	-	6	853		c.e6+1			NM_017940.3	NP_060410.2	Q3BBV0	NBPF1_HUMAN	neuroblastoma breakpoint family, member 1							cytoplasm									UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													4	29					0	0	0.009096	0	0
HADHA	3030	broad.mit.edu	37	2	26416532	26416532	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr2:26416532G>C	ENST00000380649.3	-	17	1928	c.1799C>G	c.(1798-1800)gCg>gGg	p.A600G		NM_000182.4	NP_000173.2	P40939	ECHA_HUMAN	hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit	600					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding	p.A600G(1)		autonomic_ganglia(1)|breast(1)|endometrium(5)|kidney(1)|large_intestine(6)|lung(10)|ovary(1)|prostate(4)|skin(1)	30	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	CAGATCTTCCGCCACATGTTT	0.547000													22	162					0	0	0.076483	0	0
DDX50	79009	broad.mit.edu	37	10	70679718	70679718	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr10:70679718T>C	ENST00000373585.3	+	8	1327	c.1220T>C	c.(1219-1221)aTg>aCg	p.M407T	DDX50_ENST00000466265.1_3'UTR	NM_024045.1	NP_076950.1	Q9BQ39	DDX50_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	407	Helicase C-terminal.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding	p.M407T(1)		breast(2)|cervix(1)|endometrium(3)|kidney(4)|large_intestine(5)|liver(2)|lung(6)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)	29						GAAATGGCCATGAATCCACAC	0.388000													5	113					0	0	0.021553	0	0
MYRIP	25924	broad.mit.edu	37	3	40231754	40231754	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr3:40231754C>T	ENST00000302541.6	+	10	1807	c.1465C>T	c.(1465-1467)Cgc>Tgc	p.R489C	MYRIP_ENST00000459828.1_3'UTR|MYRIP_ENST00000539167.1_Missense_Mutation_p.R302C|MYRIP_ENST00000444716.1_Missense_Mutation_p.R489C|MYRIP_ENST00000425621.1_Missense_Mutation_p.R489C|MYRIP_ENST00000396217.3_Missense_Mutation_p.R400C	NM_015460.2	NP_056275.2	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	489	Myosin-binding.				intracellular protein transport		actin binding|zinc ion binding	p.R489C(1)		breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|liver(2)|lung(10)|ovary(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	34				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		TGAGAAGATGCGCTTGCATGG	0.647000													4	63					0	0	0.009096	0	0
SEMA4A	64218	broad.mit.edu	37	1	156146629	156146629	+	Silent	SNP	A	A	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr1:156146629A>T	ENST00000368285.3	+	15	2394	c.2127A>T	c.(2125-2127)gcA>gcT	p.A709A	SEMA4A_ENST00000368284.1_Silent_p.A577A|SEMA4A_ENST00000368286.2_Silent_p.A577A|SEMA4A_ENST00000355014.2_Silent_p.A709A|SEMA4A_ENST00000368282.1_Silent_p.A709A	NM_001193300.1|NM_022367.3	NP_001180229.1|NP_071762.2	Q9H3S1	SEM4A_HUMAN	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	709					axon guidance	integral to membrane|plasma membrane	receptor activity	p.A709A(1)		breast(1)|ovary(2)|skin(2)	5	Hepatocellular(266;0.158)					CATTGAGAGCACTCCGGGCTC	0.602000													4	41					0	0	0.009096	0	0
MYH7	4625	broad.mit.edu	37	14	23887583	23887583	+	Silent	SNP	C	C	T	rs144465613	byFrequency	TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr14:23887583C>T	ENST00000355349.3	-	30	4167	c.4005G>A	c.(4003-4005)tcG>tcA	p.S1335S		NM_000257.2	NP_000248.2	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1335					adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle	p.S1335S(3)		NS(3)|breast(4)|central_nervous_system(2)|cervix(2)|endometrium(14)|haematopoietic_and_lymphoid_tissue(3)|kidney(5)|large_intestine(19)|lung(57)|ovary(5)|prostate(9)|skin(5)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(5)	137	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CATGCCGGGCCGACTGCAGTG	0.662000													3	37					0	0	0.014758	0	0
PARP3	10039	broad.mit.edu	37	3	51982371	51982371	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr3:51982371G>A	ENST00000417220.2	+	12	1965	c.1477G>A	c.(1477-1479)Gtg>Atg	p.V493M	PARP3_ENST00000398755.3_Missense_Mutation_p.V500M|PARP3_ENST00000486510.1_3'UTR|PARP3_ENST00000431474.1_Missense_Mutation_p.V493M			Q9Y6F1	PARP3_HUMAN	poly (ADP-ribose) polymerase family, member 3	493	PARP catalytic.				DNA repair|protein ADP-ribosylation	centriole|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding	p.V500M(1)		ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CCAGCAAGTGGTGGTGCCCCA	0.647000													12	41					0	0	0.080935	0	0
AMER3	205147	broad.mit.edu	37	2	131521595	131521595	+	Silent	SNP	C	C	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr2:131521595C>T	ENST00000423981.1	+	2	2060	c.1950C>T	c.(1948-1950)gtC>gtT	p.V650V	AMER3_ENST00000321420.4_Silent_p.V650V	NM_001105193.1|NM_001105194.1|NM_001105195.1|NM_152698.2	NP_001098663.1|NP_001098664.1|NP_001098665.1|NP_689911.2			APC membrane recruitment protein 3									p.V650V(1)									CACCAGGGGTCCTGGGGTGTT	0.622000													6	19					0	0	0.021553	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765		TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr10:38654432A>G	ENST00000494540.1	+	0	599					NR_003086.1																						TCATCTCGCAATGCAAGGAAA	0.453000													3	52					0	0	0.004672	0	0
ARHGAP35	2909	broad.mit.edu	37	19	47422639	47422639	+	Missense_Mutation	SNP	T	T	G			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr19:47422639T>G	ENST00000404338.3	+	1	707	c.707T>G	c.(706-708)gTg>gGg	p.V236G		NM_004491.4	NP_004482.4	Q9NRY4	RHG35_HUMAN	Rho GTPase activating protein 35	236					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity	p.V236G(2)									AATGTAAACGTGGACTTGGCT	0.443000													3	74					0	0	0.004672	0	0
ASB18	401036	broad.mit.edu	37	2	237172866	237172866	+	Silent	SNP	C	C	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr2:237172866C>T	ENST00000409749.3	-	1	122	c.123G>A	c.(121-123)acG>acA	p.T41T	AC079135.1_ENST00000415226.1_RNA	NM_212556.2	NP_997721.2	Q6ZVZ8	ASB18_HUMAN	ankyrin repeat and SOCS box containing 18	41					intracellular signal transduction			p.T41T(1)		large_intestine(1)|lung(3)|ovary(1)|prostate(1)	6		all_hematologic(139;0.00615)|Renal(207;0.00963)|Breast(86;0.0126)|Acute lymphoblastic leukemia(138;0.0815)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)|GBM - Glioblastoma multiforme(43;0.244)		CGTCCACAGGCGTGATTTCAG	0.522000													3	37					0	0	0.009096	0	0
MYH7	4625	broad.mit.edu	37	14	23887505	23887505	+	Silent	SNP	A	A	C			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr14:23887505A>C	ENST00000355349.3	-	30	4245	c.4083T>G	c.(4081-4083)ctT>ctG	p.L1361L		NM_000257.2	NP_000248.2	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1361					adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle	p.L1361L(1)		NS(3)|breast(4)|central_nervous_system(2)|cervix(2)|endometrium(14)|haematopoietic_and_lymphoid_tissue(3)|kidney(5)|large_intestine(19)|lung(57)|ovary(5)|prostate(9)|skin(5)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(5)	137	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGGCCTTGGAAAGGACGCGCT	0.652000													3	79					0	0	0.004672	0	0
RP11-24M17.5	0	broad.mit.edu	37	15	76074470	76074470	+	RNA	SNP	A	A	G			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr15:76074470A>G	ENST00000395215.3	+	0	649																		p.Q203R(4)									CGGTTACAGCAGACCATAAAG	0.577000													3	43					0	0	0.014758	0	0
DAP3	7818	broad.mit.edu	37	1	155707980	155707980	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr1:155707980T>C	ENST00000368336.5	+	13	1268	c.1144T>C	c.(1144-1146)Ttc>Ctc	p.F382L	MSTO1_ENST00000538143.1_Intron|DAP3_ENST00000421487.2_Missense_Mutation_p.F348L|MSTO1_ENST00000452804.2_Intron|DAP3_ENST00000535183.1_Missense_Mutation_p.F341L|DAP3_ENST00000343043.3_Missense_Mutation_p.F382L	NM_001199849.1|NM_004632.3	NP_001186778.1|NP_004623.1	P51398	RT29_HUMAN	death associated protein 3	382					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding	p.F382L(1)		breast(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(1)|lung(12)|ovary(1)|prostate(2)|skin(1)|urinary_tract(1)	24	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					AGAGCTGCTGTTCCTAAGTAA	0.502000													3	27					0	0	0.004672	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813779	106813779	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr8:106813779C>A	ENST00000407775.2	+	8	1719	c.1469C>A	c.(1468-1470)cCt>cAt	p.P490H	ZFPM2_ENST00000520492.1_Missense_Mutation_p.P358H|ZFPM2_ENST00000517361.1_Missense_Mutation_p.P358H|RP11-152P17.2_ENST00000509144.2_RNA|RP11-152P17.2_ENST00000518932.1_RNA|RP11-152P17.2_ENST00000520594.1_RNA|ZFPM2_ENST00000522296.1_3'UTR|RP11-152P17.2_ENST00000524045.2_RNA|RP11-152P17.2_ENST00000521622.1_RNA|ZFPM2_ENST00000378472.4_Missense_Mutation_p.P221H|RP11-152P17.2_ENST00000520433.1_RNA	NM_012082.3	NP_036214.2	Q8WW38	FOG2_HUMAN	zinc finger protein, FOG family member 2	490					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding	p.P490H(1)		NS(4)|breast(6)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(11)|liver(2)|lung(48)|ovary(4)|prostate(5)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	99			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AATATTGGGCCTTCTTTCCCT	0.443000													21	114					1.22574e-08	1.4486e-08	0.069288	1	0
ARHGAP35	2909	broad.mit.edu	37	19	47422639	47422639	+	Missense_Mutation	SNP	T	T	G			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr19:47422639T>G	ENST00000404338.3	+	1	707	c.707T>G	c.(706-708)gTg>gGg	p.V236G		NM_004491.4	NP_004482.4	Q9NRY4	RHG35_HUMAN	Rho GTPase activating protein 35	236					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity	p.V236G(2)									AATGTAAACGTGGACTTGGCT	0.443000													3	74					0	0	0.004672	0	0
ASB18	401036	broad.mit.edu	37	2	237172866	237172866	+	Silent	SNP	C	C	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr2:237172866C>T	ENST00000409749.3	-	1	122	c.123G>A	c.(121-123)acG>acA	p.T41T	AC079135.1_ENST00000415226.1_RNA	NM_212556.2	NP_997721.2	Q6ZVZ8	ASB18_HUMAN	ankyrin repeat and SOCS box containing 18	41					intracellular signal transduction			p.T41T(1)		large_intestine(1)|lung(3)|ovary(1)|prostate(1)	6		all_hematologic(139;0.00615)|Renal(207;0.00963)|Breast(86;0.0126)|Acute lymphoblastic leukemia(138;0.0815)		Epithelial(121;2.04e-26)|OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(100;2.88e-05)|Lung(119;0.000383)|LUSC - Lung squamous cell carcinoma(224;0.00644)|GBM - Glioblastoma multiforme(43;0.244)		CGTCCACAGGCGTGATTTCAG	0.522000													3	37					0	0	0.009096	0	0
SEMA4A	64218	broad.mit.edu	37	1	156146629	156146629	+	Silent	SNP	A	A	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr1:156146629A>T	ENST00000368285.3	+	15	2394	c.2127A>T	c.(2125-2127)gcA>gcT	p.A709A	SEMA4A_ENST00000355014.2_Silent_p.A709A|SEMA4A_ENST00000368282.1_Silent_p.A709A|SEMA4A_ENST00000368286.2_Silent_p.A577A|SEMA4A_ENST00000368284.1_Silent_p.A577A	NM_001193300.1|NM_022367.3	NP_001180229.1|NP_071762.2	Q9H3S1	SEM4A_HUMAN	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	709					axon guidance	integral to membrane|plasma membrane	receptor activity	p.A709A(1)		breast(1)|ovary(2)|skin(2)	5	Hepatocellular(266;0.158)					CATTGAGAGCACTCCGGGCTC	0.602000													4	41					0	0	0.009096	0	0
PARP3	10039	broad.mit.edu	37	3	51982371	51982371	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr3:51982371G>A	ENST00000417220.2	+	12	1965	c.1477G>A	c.(1477-1479)Gtg>Atg	p.V493M	PARP3_ENST00000431474.1_Missense_Mutation_p.V493M|PARP3_ENST00000486510.1_3'UTR|PARP3_ENST00000398755.3_Missense_Mutation_p.V500M			Q9Y6F1	PARP3_HUMAN	poly (ADP-ribose) polymerase family, member 3	493	PARP catalytic.				DNA repair|protein ADP-ribosylation	centriole|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding	p.V500M(1)		ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CCAGCAAGTGGTGGTGCCCCA	0.647000													12	41					0	0	0.080935	0	0
MYRIP	25924	broad.mit.edu	37	3	40231754	40231754	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr3:40231754C>T	ENST00000302541.6	+	10	1807	c.1465C>T	c.(1465-1467)Cgc>Tgc	p.R489C	MYRIP_ENST00000396217.3_Missense_Mutation_p.R400C|MYRIP_ENST00000425621.1_Missense_Mutation_p.R489C|MYRIP_ENST00000459828.1_3'UTR|MYRIP_ENST00000444716.1_Missense_Mutation_p.R489C|MYRIP_ENST00000539167.1_Missense_Mutation_p.R302C	NM_015460.2	NP_056275.2	Q8NFW9	MYRIP_HUMAN	myosin VIIA and Rab interacting protein	489	Myosin-binding.				intracellular protein transport		actin binding|zinc ion binding	p.R489C(1)		breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(9)|liver(2)|lung(10)|ovary(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	34				KIRC - Kidney renal clear cell carcinoma(284;0.174)|Kidney(284;0.206)		TGAGAAGATGCGCTTGCATGG	0.647000													4	63					0	0	0.009096	0	0
ZNF761	388561	broad.mit.edu	37	19	53945837	53945837	+	RNA	SNP	T	T	C	rs17855120	by1000genomes	TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr19:53945837T>C	ENST00000454407.1	+	0	55				TPM3P9_ENST00000424846.3_RNA			Q86XN6	ZN761_HUMAN	zinc finger protein 761						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|kidney(2)|large_intestine(5)|lung(13)|ovary(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	30				GBM - Glioblastoma multiforme(134;0.00786)		GGACCAGACTTTGCTTGACCT	0.512000													3	34					0	0	0.014758	0	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr1:16918653C>T	ENST00000430580.2	-	6	853		c.e6+1			NM_017940.3	NP_060410.2	Q3BBV0	NBPF1_HUMAN	neuroblastoma breakpoint family, member 1							cytoplasm									UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													4	29					0	0	0.009096	0	0
DAP3	7818	broad.mit.edu	37	1	155707980	155707980	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr1:155707980T>C	ENST00000368336.5	+	13	1268	c.1144T>C	c.(1144-1146)Ttc>Ctc	p.F382L	DAP3_ENST00000535183.1_Missense_Mutation_p.F341L|MSTO1_ENST00000452804.2_Intron|DAP3_ENST00000343043.3_Missense_Mutation_p.F382L|MSTO1_ENST00000538143.1_Intron|DAP3_ENST00000421487.2_Missense_Mutation_p.F348L	NM_001199849.1|NM_004632.3	NP_001186778.1|NP_004623.1	P51398	RT29_HUMAN	death associated protein 3	382					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding	p.F382L(1)		breast(1)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(1)|lung(12)|ovary(1)|prostate(2)|skin(1)|urinary_tract(1)	24	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					AGAGCTGCTGTTCCTAAGTAA	0.502000													3	27					0	0	0.004672	0	0
MYH7	4625	broad.mit.edu	37	14	23887505	23887505	+	Silent	SNP	A	A	C			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr14:23887505A>C	ENST00000355349.3	-	30	4245	c.4083T>G	c.(4081-4083)ctT>ctG	p.L1361L		NM_000257.2	NP_000248.2	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1361					adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle	p.L1361L(1)		NS(3)|breast(4)|central_nervous_system(2)|cervix(2)|endometrium(14)|haematopoietic_and_lymphoid_tissue(3)|kidney(5)|large_intestine(19)|lung(57)|ovary(5)|prostate(9)|skin(5)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(5)	137	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGGCCTTGGAAAGGACGCGCT	0.652000													3	79					0	0	0.004672	0	0
AMER3	205147	broad.mit.edu	37	2	131521595	131521595	+	Silent	SNP	C	C	T			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr2:131521595C>T	ENST00000423981.1	+	2	2060	c.1950C>T	c.(1948-1950)gtC>gtT	p.V650V	AMER3_ENST00000321420.4_Silent_p.V650V	NM_001105193.1|NM_001105194.1|NM_001105195.1|NM_152698.2	NP_001098663.1|NP_001098664.1|NP_001098665.1|NP_689911.2			APC membrane recruitment protein 3									p.V650V(1)									CACCAGGGGTCCTGGGGTGTT	0.622000													6	19					0	0	0.021553	0	0
HADHA	3030	broad.mit.edu	37	2	26416532	26416532	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr2:26416532G>C	ENST00000380649.3	-	17	1928	c.1799C>G	c.(1798-1800)gCg>gGg	p.A600G		NM_000182.4	NP_000173.2	P40939	ECHA_HUMAN	hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit	600					fatty acid beta-oxidation	fatty acid beta-oxidation multienzyme complex|mitochondrial nucleoid|nucleolus	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acetyltransferase activity|coenzyme binding|enoyl-CoA hydratase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity|protein binding	p.A600G(1)		autonomic_ganglia(1)|breast(1)|endometrium(5)|kidney(1)|large_intestine(6)|lung(10)|ovary(1)|prostate(4)|skin(1)	30	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				NADH(DB00157)	CAGATCTTCCGCCACATGTTT	0.547000													22	162					0	0	0.076483	0	0
DDX50	79009	broad.mit.edu	37	10	70679718	70679718	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr10:70679718T>C	ENST00000373585.3	+	8	1327	c.1220T>C	c.(1219-1221)aTg>aCg	p.M407T	DDX50_ENST00000466265.1_3'UTR	NM_024045.1	NP_076950.1	Q9BQ39	DDX50_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	407	Helicase C-terminal.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding	p.M407T(1)		breast(2)|cervix(1)|endometrium(3)|kidney(4)|large_intestine(5)|liver(2)|lung(6)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)	29						GAAATGGCCATGAATCCACAC	0.388000													5	113					0	0	0.021553	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813779	106813779	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr8:106813779C>A	ENST00000407775.2	+	8	1719	c.1469C>A	c.(1468-1470)cCt>cAt	p.P490H	RP11-152P17.2_ENST00000521622.1_RNA|RP11-152P17.2_ENST00000524045.2_RNA|RP11-152P17.2_ENST00000520433.1_RNA|ZFPM2_ENST00000378472.4_Missense_Mutation_p.P221H|RP11-152P17.2_ENST00000520594.1_RNA|ZFPM2_ENST00000522296.1_3'UTR|ZFPM2_ENST00000520492.1_Missense_Mutation_p.P358H|RP11-152P17.2_ENST00000509144.2_RNA|ZFPM2_ENST00000517361.1_Missense_Mutation_p.P358H|RP11-152P17.2_ENST00000518932.1_RNA	NM_012082.3	NP_036214.2	Q8WW38	FOG2_HUMAN	zinc finger protein, FOG family member 2	490					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding	p.P490H(1)		NS(4)|breast(6)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(11)|liver(2)|lung(48)|ovary(4)|prostate(5)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	99			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AATATTGGGCCTTCTTTCCCT	0.443000													21	114					1.22574e-08	1.44204e-08	0.069288	1	0
ANKRD30BP2	149992	broad.mit.edu	37	21	14414855	14414855	+	RNA	SNP	A	A	G	rs141732548	by1000genomes	TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr21:14414855A>G	ENST00000507941.1	+	0	95																											GCCAATGGCCATGCAGAAGTA	0.448000													7	39					0	0	0.029380	0	0
AC016995.3	0	broad.mit.edu	37	2	38710019	38710019	+	RNA	DEL	T	T	-	rs2005502	by1000genomes	TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr2:38710019delT	ENST00000417039.1	-	0	696																											CTTtaaaaaataaataaataa	0.244													2	4	---	---	---	---					
CWF19L2	143884	broad.mit.edu	37	11	107299527	107299530	+	Frame_Shift_Del	DEL	AGCA	AGCA	-			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr11:107299527_107299530delAGCA	ENST00000282251.5	-	8	1455_1458	c.1428_1431delTGCT	c.(1426-1431)ttfs	p.FA476fs	CWF19L2_ENST00000433523.1_Frame_Shift_Del_p.FA476fs	NM_152434.2	NP_689647.2	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control (S. pombe)	476							catalytic activity			endometrium(4)|kidney(2)|large_intestine(13)|lung(21)	40		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		TAAAATACCCAGCAAATGTAGACT	0.348													25	156	---	---	---	---					
CTD-2509G16.5	0	broad.mit.edu	37	14	65748001	65748002	+	RNA	INS	-	-	TT	rs1760975		TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-10A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	e956874c-3969-4986-9b7f-7d8c1b3f2160	g.chr14:65748001_65748002insTT	ENST00000553754.1	-	0	300																											TTCTTTCtttcttttttttttt	0.485													3	4	---	---	---	---					
LPAR3	23566	broad.mit.edu	37	1	85331664	85331665	+	Frame_Shift_Ins	INS	-	-	A	rs76299065		TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr1:85331664_85331665insA	ENST00000440886.1	-	1	177_178	c.139_140insT	c.(139-141)taafs	p.*47fs	LPAR3_ENST00000491034.1_5'UTR|LPAR3_ENST00000370611.3_Frame_Shift_Ins_p.*47fs			Q9UBY5	LPAR3_HUMAN	lysophosphatidic acid receptor 3	47					G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane|intracellular membrane-bounded organelle				central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(11)|ovary(2)|urinary_tract(1)	24						CAGAGAATTAGAAAAAAAAATA	0.401													7	131	---	---	---	---					
CWF19L2	143884	broad.mit.edu	37	11	107299527	107299530	+	Frame_Shift_Del	DEL	AGCA	AGCA	-			TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr11:107299527_107299530delAGCA	ENST00000282251.5	-	8	1455_1458	c.1428_1431delTGCT	c.(1426-1431)ttfs	p.FA476fs	CWF19L2_ENST00000433523.1_Frame_Shift_Del_p.FA476fs	NM_152434.2	NP_689647.2	Q2TBE0	C19L2_HUMAN	CWF19-like 2, cell cycle control (S. pombe)	476							catalytic activity			endometrium(4)|kidney(2)|large_intestine(13)|lung(21)	40		Melanoma(852;1.75e-05)|all_epithelial(67;6.27e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0258)		Epithelial(105;7.18e-06)|BRCA - Breast invasive adenocarcinoma(274;1.65e-05)|all cancers(92;1.76e-05)		TAAAATACCCAGCAAATGTAGACT	0.348													25	156	---	---	---	---					
ZNF598	90850	broad.mit.edu	37	16	2049882	2049883	+	In_Frame_Ins	INS	-	-	TCC	rs61746014	by1000genomes	TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr16:2049882_2049883insTCC	ENST00000563630.1	-	9	1744_1745	c.1502_1503insGGA	c.(1501-1503)ggg>gGGAgg	p.501_502insR	ZNF598_ENST00000431526.1_In_Frame_Ins_p.556_557insR|ZNF598_ENST00000562103.1_In_Frame_Ins_p.501_502insR			Q86UK7	ZN598_HUMAN	zinc finger protein 598	556						intracellular	zinc ion binding	p.E555_D556insE(1)		NS(2)|breast(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|lung(7)|skin(1)|urinary_tract(1)	16						CCGGGCCGCCGTCCTCCTCCTC	0.703													3	3	---	---	---	---					
RP11-459C13.1	0	broad.mit.edu	37	17	3883462	3883463	+	RNA	INS	-	-	A	rs55913264		TCGA-44-6148-01A-11D-1753-08	TCGA-44-6148-11A-01D-1753-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9c7b3ac8-1352-49cd-8a8c-df6b19f6fd64	4b46ef04-665d-4e12-a28b-68df0681eef3	g.chr17:3883462_3883463insA	ENST00000571890.1	+	0	92																											gactccatctcaaaaaaaaaaa	0.495													3	5	---	---	---	---					
