Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TLN2	83660	broad.mit.edu	37	15	62939636	62939636	+	Missense_Mutation	SNP	A	A	G			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr15:62939636A>G	ENST00000561311.1	+	3	357	c.127A>G	c.(127-129)Act>Gct	p.T43A	TLN2_ENST00000306829.6_Missense_Mutation_p.T43A			Q9Y4G6	TLN2_HUMAN	talin 2	43					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			NS(3)|breast(6)|central_nervous_system(3)|endometrium(8)|kidney(8)|large_intestine(20)|lung(34)|ovary(6)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(5)	99						TGAGGCACAAACTGGGCAAGG	0.483000													5	135					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152082220	152082220	+	Missense_Mutation	SNP	G	G	C	rs113946258		TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr1:152082220G>C	ENST00000368804.1	-	2	3472	c.3473C>G	c.(3472-3474)cCg>cGg	p.P1158R		NM_007113.2	NP_009044.2	Q07283	TRHY_HUMAN	trichohyalin	1158	10 X 30 AA tandem repeats.				keratinization	cytoskeleton	calcium ion binding			NS(2)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(20)|kidney(9)|large_intestine(16)|lung(33)|ovary(3)|pancreas(1)|prostate(4)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(4)	105	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCTTCTCCGGTTCCTCTCT	0.592000													4	45					0	0	1	0	0
PRG4	10216	broad.mit.edu	37	1	186275983	186275983	+	Missense_Mutation	SNP	C	C	A			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr1:186275983C>A	ENST00000445192.2	+	7	1177	c.1132C>A	c.(1132-1134)Ccc>Acc	p.P378T	PRG4_ENST00000367485.4_Missense_Mutation_p.P285T|PRG4_ENST00000367483.4_Missense_Mutation_p.P337T|PRG4_ENST00000367486.3_Missense_Mutation_p.P335T|PRG4_ENST00000367484.3_Missense_Mutation_p.P337T	NM_005807.3	NP_005798.2	Q92954	PRG4_HUMAN	proteoglycan 4	378	59 X 8 AA repeats of K-X-P-X-P-T-T-X.				cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			NS(2)|breast(1)|central_nervous_system(1)|endometrium(26)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(12)|lung(33)|prostate(7)|skin(9)|upper_aerodigestive_tract(2)|urinary_tract(1)	102						ACCCACCACCCCCAAGGAGCC	0.637000													5	141					5.9392e-07	7.7952e-07	1	1	0
TM9SF4	9777	broad.mit.edu	37	20	30729321	30729321	+	Missense_Mutation	SNP	G	G	A			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr20:30729321G>A	ENST00000217315.5	+	4	540	c.200G>A	c.(199-201)cGg>cAg	p.R67Q	TM9SF4_ENST00000398022.2_Missense_Mutation_p.R84Q			Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	84						integral to membrane				central_nervous_system(2)|kidney(1)|large_intestine(4)|lung(8)|pancreas(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	20			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			AGAGGGGACCGGATTGTCAAC	0.547000													8	84					0	0	1	0	0
DHRS4	10901	broad.mit.edu	37	14	24424420	24424420	+	Splice_Site	SNP	C	C	T			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr14:24424420C>T	ENST00000313250.5	+	2	508	c.306_splice	c.e2+1	p.T102_splice	DHRS4_ENST00000397074.3_Splice_Site_p.T102_splice|DHRS4_ENST00000543741.2_Splice_Site_p.T102_splice|DHRS4_ENST00000397075.3_Splice_Site_p.T102_splice|DHRS4_ENST00000382761.3_Splice_Site_p.T84_splice|DHRS4_ENST00000421831.1_Splice_Site_p.T84_splice|DHRS4_ENST00000558263.1_Splice_Site_p.T102_splice|DHRS4_ENST00000559632.1_Splice_Site_p.T102_splice|DHRS4_ENST00000308178.8_Splice_Site_p.T84_splice|DHRS4_ENST00000558581.1_Splice_Site_p.T102_splice|DHRS4_ENST00000397073.2_Splice_Site_p.T84_splice	NM_021004.2	NP_066284.2	Q9BTZ2	DHRS4_HUMAN	dehydrogenase/reductase (SDR family) member 4	102				T -> M (in Ref. 1; AAD02292).		mitochondrion|nuclear membrane|peroxisome	binding|carbonyl reductase (NADPH) activity	p.T102M(4)		central_nervous_system(2)|endometrium(1)|kidney(3)|large_intestine(1)|lung(4)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	14				GBM - Glioblastoma multiforme(265;0.00962)	Vitamin A(DB00162)	CTGGTGGCCACGGTGAGCTGC	0.652000													3	22					0	0	1	0	0
IRX6	79190	broad.mit.edu	37	16	55362797	55362797	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr16:55362797C>T	ENST00000290552.7	+	5	2239	c.907C>T	c.(907-909)Cga>Tga	p.R303*	RP11-26L20.3_ENST00000558730.2_RNA	NM_024335.2	NP_077311.2	P78412	IRX6_HUMAN	iroquois homeobox 6	303						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)|central_nervous_system(5)|endometrium(3)|kidney(2)|large_intestine(6)|liver(2)|lung(10)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	33						TCGAGAGGGCCGATTGGAGCG	0.657000													5	71					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72821615	72821615	+	Silent	SNP	G	G	A			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr16:72821615G>A	ENST00000268489.5	-	10	11232	c.10560C>T	c.(10558-10560)ggC>ggT	p.G3520G	AC004943.1_ENST00000584072.1_RNA|ZFHX3_ENST00000397992.5_Silent_p.G2606G	NM_006885.3	NP_008816.3	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3	3520	Poly-Gly.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			NS(3)|breast(7)|cervix(2)|endometrium(18)|haematopoietic_and_lymphoid_tissue(5)|kidney(8)|large_intestine(22)|liver(1)|lung(46)|ovary(5)|pancreas(1)|prostate(15)|skin(6)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(11)	153		Ovarian(137;0.13)				cgccgccgccgccaccgccgc	0.706000													4	29					0	0	1	0	0
LOC220729	220729	broad.mit.edu	37	3	197348634	197348634	+	RNA	SNP	G	G	C			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr3:197348634G>C	ENST00000418868.1	-	0	625					NR_003266.2																						CAGCAGCACCGATGGGCCTGC	0.542000													3	36					0	0	1	0	0
ZNF721	170960	broad.mit.edu	37	4	436647	436647	+	Missense_Mutation	SNP	C	C	T			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr4:436647C>T	ENST00000338977.5	-	2	1621	c.1573G>A	c.(1573-1575)Gcc>Acc	p.A525T	ZNF721_ENST00000511833.2_Missense_Mutation_p.A537T|ZNF721_ENST00000507078.1_Intron|ZNF721_ENST00000506646.1_Intron|ABCA11P_ENST00000451020.2_RNA					zinc finger protein 721											endometrium(2)|kidney(2)|large_intestine(15)|lung(6)|ovary(1)|skin(1)|stomach(5)|urinary_tract(1)	33						TGTCTAAAGGCTTTGCCACAT	0.408000													4	56					0	0	1	0	0
TRBV6-7	28600	broad.mit.edu	37	7	142144058	142144058	+	RNA	SNP	C	C	T			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr7:142144058C>T	ENST00000390373.2	-	0	26																											GAGAAAAGGCCACACAGCACA	0.602000													6	104					0	0	1	0	0
KIF6	221458	broad.mit.edu	37	6	39693060	39693060	+	Silent	SNP	G	G	A			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr6:39693060G>A	ENST00000287152.7	-	1	121	c.27C>T	c.(25-27)ttC>ttT	p.F9F	KIF6_ENST00000373216.3_Silent_p.F9F|KIF6_ENST00000373215.3_Silent_p.F9F|KIF6_ENST00000538893.1_Silent_p.F9F	NM_145027.4	NP_659464.3	Q6ZMV9	KIF6_HUMAN	kinesin family member 6	9	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			breast(2)|central_nervous_system(1)|endometrium(1)|kidney(16)|large_intestine(8)|lung(15)|ovary(1)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	52						TCACCCTCGCGAATATCTGGA	0.667000													8	272					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100349878	100349878	+	RNA	SNP	C	C	T			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr7:100349878C>T	ENST00000542585.1	+	0	2298				ZAN_ENST00000443370.1_RNA|ZAN_ENST00000348028.3_RNA|ZAN_ENST00000546213.1_RNA|ZAN_ENST00000427578.1_RNA|ZAN_ENST00000546292.1_RNA|ZAN_ENST00000538115.1_RNA|ZAN_ENST00000449052.1_RNA|ZAN_ENST00000421100.1_RNA|ZAN_ENST00000349350.6_RNA	NM_003386.1	NP_003377.1	Q9Y493	ZAN_HUMAN	zonadhesin (gene/pseudogene)						binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane		p.P717L(2)		NS(2)|breast(3)|central_nervous_system(3)|endometrium(21)|kidney(6)|large_intestine(18)|lung(60)|ovary(4)|pancreas(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)	139	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCAGAAAAACCCACCATCCCC	0.507000													5	61					0	0	1	0	0
UBBP4	23666	broad.mit.edu	37	17	21730847	21730847	+	Missense_Mutation	SNP	G	G	T			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr17:21730847G>T	ENST00000584755.1	+	2	546	c.149G>T	c.(148-150)cGg>cTg	p.R50L	UBBP4_ENST00000584398.1_Intron|UBBP4_ENST00000583708.1_Intron|UBBP4_ENST00000578713.1_Missense_Mutation_p.R50L																endometrium(9)|kidney(4)|lung(4)|prostate(3)|urinary_tract(4)	24						GGCAAGCAGCGGGAAGATGGC	0.522000													4	32					2.56e-06	2.98667e-06	1	1	0
NAAA	27163	broad.mit.edu	37	4	76862043	76862045	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr4:76862043_76862045delCAG	ENST00000286733.4	-	1	159_161	c.58_60delCTG	c.(58-60)del	p.L20del	NAAA_ENST00000507956.1_In_Frame_Del_p.L20del|NAAA_ENST00000507187.2_In_Frame_Del_p.L20del|NAAA_ENST00000399497.3_In_Frame_Del_p.L20del	NM_014435.3	NP_055250.2	Q02083	NAAA_HUMAN	N-acylethanolamine acid amidase	20					lipid metabolic process	lysosome	hydrolase activity			endometrium(3)|kidney(1)|large_intestine(1)|lung(4)|prostate(1)|skin(1)	11						CGGCCCCGGCCAGCAGCAGCAGC	0.764													2	4	---	---	---	---					
CEP128	145508	broad.mit.edu	37	14	81251876	81251876	+	Frame_Shift_Del	DEL	T	T	-			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr14:81251876delT	ENST00000555265.1	-	15	1949	c.1574delA	c.(1573-1575)agfs	p.K525fs	CEP128_ENST00000281129.3_Frame_Shift_Del_p.K525fs			Q6ZU80	CE128_HUMAN	centrosomal protein 128kDa	525						centriole|spindle pole				NS(1)|breast(3)|central_nervous_system(2)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|lung(22)|ovary(2)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	51						CAATTCATCCTTTTCTTTTAA	0.353													2	4	---	---	---	---					
AL901608.1	0	broad.mit.edu	37	14	106178298	106178302	+	RNA	DEL	CAGCT	CAGCT	-	rs141434480	by1000genomes	TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr14:106178298_106178302delCAGCT	ENST00000581070.1	-	0	27_31																											cagcccagcccagctcagcccagct	0.688													2	4	---	---	---	---					
SPTBN5	51332	broad.mit.edu	37	15	42145172	42145172	+	Frame_Shift_Del	DEL	T	T	-			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr15:42145172delT	ENST00000320955.6	-	60	10424	c.10197delA	c.(10195-10197)gafs	p.E3399fs		NM_016642.2	NP_057726.4	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	3399					actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				NS(1)|breast(1)|central_nervous_system(3)|endometrium(9)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(6)|lung(18)|ovary(5)|prostate(8)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	62		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		GCAGCCGCCCTTCCAGCTCCT	0.687													2	4	---	---	---	---					
ARIH1	25820	broad.mit.edu	37	15	72767214	72767215	+	In_Frame_Ins	INS	-	-	GGC			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr15:72767214_72767215insGGC	ENST00000379887.4	+	1	548_549	c.234_235insGGC	c.(232-237)gggcgg>ggGGCgcgg	p.78_79GR>GAR	RP11-1007O24.3_ENST00000565181.1_lincRNA	NM_005744.3	NP_005735.2	Q9Y4X5	ARI1_HUMAN	ariadne RBR E3 ubiquitin protein ligase 1	78	Gly-rich.				ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			endometrium(1)|kidney(4)|large_intestine(3)|lung(4)|prostate(1)|skin(1)	14						GGCCcggcggtggcggcggcgg	0.757													8	24	---	---	---	---					
GSPT1	2935	broad.mit.edu	37	16	12009531	12009539	+	In_Frame_Del	DEL	CCGCCGCCG	CCGCCGCCG	-			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr16:12009531_12009539delCCGCCGCCG	ENST00000434724.2	-	1	238_246	c.39_47delCGGCGGCGG	c.(37-48)ggg>gg	p.GGGG13del	AC007216.1_ENST00000583357.1_RNA|GSPT1_ENST00000439887.2_In_Frame_Del_p.GGGG13del|GSPT1_ENST00000420576.2_Intron	NM_001130006.1|NM_002094.3	NP_001123478.1|NP_002085.2	P15170	ERF3A_HUMAN	G1 to S phase transition 1	40					G1/S transition of mitotic cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|protein methylation	intracellular	GTP binding|GTPase activity|protein binding|translation release factor activity			breast(1)|central_nervous_system(1)|kidney(4)|lung(4)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	14						gctgctgctcccgccgccgccgccgccgc	0.780													3	5	---	---	---	---					
LOC101927580	101927580	broad.mit.edu	37	16	60043133	60043134	+	RNA	DEL	GT	GT	-	rs72034533		TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chr16:60043133_60043134delGT	ENST00000568279.1	+	0	173																											gtatgtgtgcgtgtgtgtgtgt	0.450													4	2	---	---	---	---					
ALG13	79868	broad.mit.edu	37	X	110988002	110988002	+	Frame_Shift_Del	DEL	T	T	-			TCGA-55-7816-01A-11D-2167-08	TCGA-55-7816-10A-01D-2167-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	46dedbbb-3d67-4f4f-b468-0ac908280f23	2521f54e-7377-426b-93a5-e0262e54f240	g.chrX:110988002delT	ENST00000394780.3	+	24	2814	c.2802delT	c.(2800-2802)ccfs	p.P945fs	ALG13_ENST00000470971.1_3'UTR|ALG13_ENST00000251943.4_Intron	NM_001099922.2|NM_001257231.1	NP_001093392.1|NP_001244160.1	Q9NP73	ALG13_HUMAN	ALG13, UDP-N-acetylglucosaminyltransferase subunit	945	Pro-rich.				dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity	p.P934P(4)		endometrium(2)|lung(10)|skin(1)	13						caccacctcctcctcctcctc	0.567													2	4	---	---	---	---					
