Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ARHGEF26	26084	broad.mit.edu	37	3	153840317	153840317	+	Missense_Mutation	SNP	C	C	T			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr3:153840317C>T	ENST00000356448.4	+	2	820	c.536C>T	c.(535-537)gCc>gTc	p.A179V	ARHGEF26_ENST00000465817.1_Missense_Mutation_p.A179V|ARHGEF26_ENST00000465093.1_Missense_Mutation_p.A179V	NM_001251962.1	NP_001238891.1	Q96DR7	ARHGQ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 26	179					regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			endometrium(4)|kidney(1)|large_intestine(7)|lung(8)|ovary(1)|pancreas(1)|urinary_tract(1)	23						AATGGCCTTGCCGCTAATAAC	0.652000													3	36					0	0	1	0	0
TSSC2	0	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	C	T			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr11:3427845C>T	ENST00000529482.1	+	0	962																											CTTCAAGTGGCAGGAGCAGAA	0.587000													3	27					0	0	1	0	0
MS4A13	503497	broad.mit.edu	37	11	60285574	60285574	+	Silent	SNP	C	C	T			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr11:60285574C>T	ENST00000378186.2	+	3	341	c.18C>T	c.(16-18)caC>caT	p.H6H	MS4A13_ENST00000437058.2_Silent_p.H6H|MS4A13_ENST00000378185.2_Silent_p.H6H|MS4A13_ENST00000527948.1_Silent_p.H6H	NM_001012417.2	NP_001012417.2	Q5J8X5	M4A13_HUMAN	membrane-spanning 4-domains, subfamily A, member 13	6						integral to membrane				endometrium(3)|large_intestine(1)|lung(2)|skin(2)	8						GCATCTTTCACATTTTCATGT	0.313000													9	37					0	0	1	0	0
SYNM	23336	broad.mit.edu	37	15	99672880	99672880	+	Missense_Mutation	SNP	G	G	C			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr15:99672880G>C	ENST00000336292.6	+	5	4432	c.4312G>C	c.(4312-4314)Ggc>Cgc	p.G1438R	SYNM_ENST00000328642.7_Intron|SYNM_ENST00000560674.1_Intron|SYNM_ENST00000561323.1_3'UTR	NM_145728.2	NP_663780.2	O15061	SYNEM_HUMAN	synemin, intermediate filament protein	1439	Interaction with DMD and UTRN.|Interaction with TLN1 and VCL.|Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			NS(1)|breast(1)|central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(8)|lung(6)|ovary(3)|prostate(1)|skin(2)|urinary_tract(1)	29						CCCTGAGCTAGGCAAGTTAGC	0.512000													4	157					0	0	1	0	0
ANO1	55107	broad.mit.edu	37	11	70009403	70009403	+	Missense_Mutation	SNP	C	C	T			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr11:70009403C>T	ENST00000355303.5	+	19	2212	c.1907C>T	c.(1906-1908)cCg>cTg	p.P636L	ANO1_ENST00000316296.5_Missense_Mutation_p.P578L|ANO1_ENST00000538023.1_Missense_Mutation_p.P636L|ANO1_ENST00000530676.1_Missense_Mutation_p.P490L|ANO1_ENST00000398543.2_Missense_Mutation_p.P490L|ANO1_ENST00000531349.1_Missense_Mutation_p.P345L	NM_018043.5	NP_060513.5	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	636					multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(3)|lung(12)|ovary(3)|pancreas(1)|upper_aerodigestive_tract(1)	29						GTTGGACGCCCGGGCGACTAC	0.532000													15	48					0	0	1	0	0
UGT1A7	0	broad.mit.edu	37	2	234591304	234591304	+	Missense_Mutation	SNP	G	G	A			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr2:234591304G>A	ENST00000373426.3	+	1	721	c.721G>A	c.(721-723)Gca>Aca	p.A241T	UGT1A8_ENST00000373450.4_Intron|UGT1A10_ENST00000373445.1_Intron|UGT1A9_ENST00000354728.4_Intron|UGT1A10_ENST00000344644.5_Intron	NM_019077.2	NP_061950.2														NS(1)|endometrium(6)|kidney(5)|large_intestine(5)|liver(1)|lung(12)|ovary(1)|prostate(1)|skin(1)	33		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CCCTGTCACGGCATATGATCT	0.413000													5	309					0	0	1	0	0
NUMA1	0	broad.mit.edu	37	11	71727189	71727189	+	Missense_Mutation	SNP	G	G	A			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr11:71727189G>A	ENST00000393695.3	-	15	1691	c.1360C>T	c.(1360-1362)Cgg>Tgg	p.R454W	RP11-849H4.4_ENST00000502284.1_RNA|NUMA1_ENST00000358965.6_Missense_Mutation_p.R454W|NUMA1_ENST00000351960.6_Intron	NM_006185.2	NP_006176.2	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	454					G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			central_nervous_system(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(12)|lung(20)|ovary(5)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(3)	65						AAGTGGCCCCGCTCAGCAAGC	0.577000			T	RARA	APL						OREG0021187	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	87					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	A	G			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr9:20414343A>G	ENST00000380338.4	-	5	787	c.501T>C	c.(499-501)agT>agC	p.S167S	MLLT3_ENST00000475957.1_5'UTR|MLLT3_ENST00000355930.6_5'UTR|MLLT3_ENST00000429426.2_Silent_p.S164S	NM_004529.2	NP_004520.2	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	167	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding	p.S167S(19)		central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(6)|lung(24)|ovary(1)|prostate(4)|skin(1)|urinary_tract(7)	66				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctgctactgctgctgc	0.532000			T	MLL	ALL								4	55					0	0	1	0	0
ATG10	83734	broad.mit.edu	37	5	81548458	81548458	+	Silent	SNP	G	G	A			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr5:81548458G>A	ENST00000282185.3	+	6	825	c.531G>A	c.(529-531)aaG>aaA	p.K177K	ATG10_ENST00000514253.2_Intron|ATG10_ENST00000513634.1_Silent_p.K177K|ATG10_ENST00000458350.3_Silent_p.K177K	NM_031482.4	NP_113670.1	Q9H0Y0	ATG10_HUMAN	autophagy related 10	177					autophagy in response to ER overload|positive regulation of protein modification process|protein lipidation|protein modification by small protein conjugation|protein transport	cytoplasm	Atg12 ligase activity|protein binding			central_nervous_system(1)|endometrium(1)|large_intestine(1)|lung(4)|prostate(2)	9		Lung NSC(167;0.0258)|all_lung(232;0.0294)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;9.94e-41)|Epithelial(54;6.3e-36)|all cancers(79;2.31e-30)		CTGTATTAAAGAATTCTCAGA	0.343000													4	55					0	0	1	0	0
JHDM1D	0	broad.mit.edu	37	7	139810907	139810907	+	Missense_Mutation	SNP	A	A	C			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr7:139810907A>C	ENST00000397560.2	-	11	1513	c.1416T>G	c.(1414-1416)atT>atG	p.I472M	JHDM1D_ENST00000006967.5_Missense_Mutation_p.I472M	NM_030647.1	NP_085150.1	Q6ZMT4	KDM7_HUMAN		472					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			central_nervous_system(2)|endometrium(4)|kidney(1)|large_intestine(1)|lung(10)|ovary(1)|prostate(1)|skin(1)|stomach(1)	22	Melanoma(164;0.0142)					CTATTGCTCGAATTACTTTAG	0.323000													3	53					0	0	1	0	0
FYN	2534	broad.mit.edu	37	6	111995769	111995769	+	Missense_Mutation	SNP	C	C	A			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr6:111995769C>A	ENST00000354650.3	-	13	1944	c.1338G>T	c.(1336-1338)aaG>aaT	p.K446N	FYN_ENST00000538466.1_Missense_Mutation_p.K443N|FYN_ENST00000368678.4_Missense_Mutation_p.K443N|FYN_ENST00000229470.5_Missense_Mutation_p.K394N|FYN_ENST00000368682.3_Missense_Mutation_p.K443N|FYN_ENST00000229471.4_Missense_Mutation_p.K391N|FYN_ENST00000368667.2_Missense_Mutation_p.K446N|FYN_ENST00000356013.2_Missense_Mutation_p.K391N	NM_002037.5	NP_002028.1	P06241	FYN_HUMAN	FYN oncogene related to SRC, FGR, YES	446	Protein kinase.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(6)|lung(17)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)	30		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	ACACGTCAGACTTGATTGTGA	0.537000													12	107					6.40141e-05	7.06363e-05	1	1	0
AXDND1	126859	broad.mit.edu	37	1	179380298	179380298	+	Missense_Mutation	SNP	A	A	G			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr1:179380298A>G	ENST00000367618.3	+	12	1514	c.1127A>G	c.(1126-1128)cAt>cGt	p.H376R	AXDND1_ENST00000457238.2_Missense_Mutation_p.H376R|AXDND1_ENST00000461179.2_3'UTR	NM_144696.4	NP_653297.3	Q5T1B0	AXDN1_HUMAN	axonemal dynein light chain domain containing 1	376										NS(1)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|lung(27)|ovary(1)|pancreas(1)|prostate(1)|skin(8)|stomach(2)|upper_aerodigestive_tract(2)	59						GAAGAATATCATGACTTATAT	0.279000													4	57					0	0	1	0	0
ZNF699	374879	broad.mit.edu	37	19	9407214	9407214	+	Missense_Mutation	SNP	C	C	T			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr19:9407214C>T	ENST00000591998.1	-	6	1094	c.866G>A	c.(865-867)aGt>aAt	p.S289N	ZNF699_ENST00000308650.3_Missense_Mutation_p.S289N			Q32M78	ZN699_HUMAN	zinc finger protein 699	289					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(7)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	24						TGAGGAACAACTAAAACCTTT	0.413000													10	62					0	0	1	0	0
USP3	9960	broad.mit.edu	37	15	63824850	63824850	+	Silent	SNP	C	C	T			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr15:63824850C>T	ENST00000268049.7	+	3	354	c.30C>T	c.(28-30)tgC>tgT	p.C10C	USP3_ENST00000536001.1_Silent_p.C32C|USP3_ENST00000539772.1_Intron|USP3_ENST00000380324.3_Silent_p.C32C|USP3_ENST00000540797.1_Silent_p.C32C|USP3_ENST00000558285.1_Silent_p.C15C			Q9Y6I4	UBP3_HUMAN	ubiquitin specific peptidase 3	32					DNA repair|histone deubiquitination|mitotic cell cycle|regulation of protein stability|ubiquitin-dependent protein catabolic process	nuclear chromatin	histone binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			endometrium(3)|large_intestine(7)|lung(4)	14				GBM - Glioblastoma multiforme(80;0.0187)		TATTAGTGTGCCGGTCCAACA	0.363000													4	116					0	0	1	0	0
SORBS2	8470	broad.mit.edu	37	4	186545479	186545479	+	Silent	SNP	G	G	A			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr4:186545479G>A	ENST00000431808.1	-	14	1655	c.1092C>T	c.(1090-1092)aaC>aaT	p.N364N	SORBS2_ENST00000498125.1_Intron|SORBS2_ENST00000448662.2_Intron|SORBS2_ENST00000437304.2_Intron|SORBS2_ENST00000449407.2_Intron|SORBS2_ENST00000418609.1_Silent_p.N268N|SORBS2_ENST00000284776.7_Silent_p.N364N|SORBS2_ENST00000393528.3_Intron|SORBS2_ENST00000355634.5_Silent_p.N464N|SORBS2_ENST00000319471.9_Intron			O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2	364						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			endometrium(7)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(9)|lung(21)|ovary(2)|prostate(2)|skin(4)|urinary_tract(1)	53		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		AGATTTCTGCGTTTTGCCGGG	0.517000													32	58					0	0	1	0	0
LPPR4	0	broad.mit.edu	37	1	99772424	99772424	+	Missense_Mutation	SNP	C	C	T			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr1:99772424C>T	ENST00000370185.3	+	7	2647	c.2150C>T	c.(2149-2151)aCg>aTg	p.T717M	LPPR4_ENST00000370184.1_Missense_Mutation_p.T559M|LPPR4_ENST00000457765.1_Missense_Mutation_p.T659M	NM_014839.4	NP_055654.2	Q7Z2D5	LPPR4_HUMAN		717							phosphatidate phosphatase activity			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(17)|lung(39)|ovary(3)|prostate(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	72		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		GGCTCAGAGACGCTGTCCATT	0.502000													17	27					0	0	1	0	0
HSD17B7P2	0	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765		TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr10:38654432A>G	ENST00000494540.1	+	0	599					NR_003086.1																						TCATCTCGCAATGCAAGGAAA	0.453000													4	54					0	0	1	0	0
GPR19	2842	broad.mit.edu	37	12	12814629	12814629	+	Missense_Mutation	SNP	T	T	C			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr12:12814629T>C	ENST00000540510.1	-	2	946	c.754A>G	c.(754-756)Aga>Gga	p.R252G	GPR19_ENST00000332427.2_Missense_Mutation_p.R252G			Q15760	GPR19_HUMAN	G protein-coupled receptor 19	252						integral to plasma membrane	G-protein coupled receptor activity			breast(1)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(4)|lung(5)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)	17		Prostate(47;0.0802)		BRCA - Breast invasive adenocarcinoma(232;0.048)		GTGCCTATTCTCCAAATATAT	0.403000													3	44					0	0	1	0	0
AXIN2	8313	broad.mit.edu	37	17	63554356	63554356	+	Missense_Mutation	SNP	A	A	G			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr17:63554356A>G	ENST00000307078.5	-	2	696	c.383T>C	c.(382-384)tTa>tCa	p.L128S	AXIN2_ENST00000375702.5_Missense_Mutation_p.L128S|CTD-2535L24.2_ENST00000577662.1_3'UTR	NM_004655.3	NP_004646.3	Q9Y2T1	AXIN2_HUMAN	axin 2	128	RGS.				cellular protein localization|cellular response to organic cyclic compound|dorsal/ventral axis specification|intramembranous ossification|maintenance of DNA repeat elements|mRNA stabilization|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of cell proliferation|negative regulation of osteoblast differentiation|odontogenesis|positive regulation of cell death|positive regulation of epithelial to mesenchymal transition|positive regulation of protein phosphorylation|regulation of centromeric sister chromatid cohesion|regulation of mismatch repair|Wnt receptor signaling pathway involved in somitogenesis	Axin-APC-beta-catenin-GSK3B complex|cell cortex|centrosome|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|nucleus|plasma membrane|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			NS(1)|central_nervous_system(2)|endometrium(5)|kidney(2)|large_intestine(10)|lung(10)|ovary(1)|prostate(1)|skin(1)|urinary_tract(1)	34						GGCTACTCGTAAAGTTTTGGT	0.463000									Oligodontia, Ectodermal Dysplasia and Colorectal Polyp syndrome				5	144					0	0	1	0	0
NDST1	3340	broad.mit.edu	37	5	149915370	149915370	+	Missense_Mutation	SNP	C	C	T	rs150009231		TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr5:149915370C>T	ENST00000261797.6	+	6	1862	c.1360C>T	c.(1360-1362)Cgc>Tgc	p.R454C	NDST1_ENST00000523767.1_Missense_Mutation_p.R454C	NM_001543.4	NP_001534.1	P52848	NDST1_HUMAN	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	454	Heparan sulfate N-deacetylase 1.				heparan sulfate proteoglycan biosynthetic process|inflammatory response	Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			breast(2)|central_nervous_system(3)|endometrium(5)|kidney(1)|large_intestine(6)|lung(10)|ovary(3)|skin(3)|upper_aerodigestive_tract(1)	34		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTGGAGCATCCGCGTGACCAG	0.642000													8	14					0	0	1	0	0
QRICH1	54870	broad.mit.edu	37	3	49094842	49094842	+	Missense_Mutation	SNP	G	G	A			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr3:49094842G>A	ENST00000395443.2	-	3	1263	c.791C>T	c.(790-792)cCg>cTg	p.P264L	QRICH1_ENST00000424300.1_Missense_Mutation_p.P264L|QRICH1_ENST00000479449.1_Intron|QRICH1_ENST00000357496.2_Missense_Mutation_p.P264L	NM_198880.1	NP_942581.1	Q2TAL8	QRIC1_HUMAN	glutamine-rich 1	264	Gln-rich.									breast(2)|endometrium(5)|large_intestine(8)|lung(8)|ovary(1)|skin(1)	25				BRCA - Breast invasive adenocarcinoma(193;8.88e-05)|Kidney(197;0.00239)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		GGTGGCCACCGGCTGCCCTGA	0.602000													14	31					0	0	1	0	0
VWA8	23078	broad.mit.edu	37	13	42249395	42249395	+	Silent	SNP	G	G	C			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr13:42249395G>C	ENST00000379310.3	-	36	4433	c.4365C>G	c.(4363-4365)gtC>gtG	p.V1455V		NM_015058.1	NP_055873.1			von Willebrand factor A domain containing 8																		GAAGATCAGTGACTTCTATAT	0.343000													4	33					0	0	1	0	0
SIRPA	140885	broad.mit.edu	37	20	1902301	1902301	+	Missense_Mutation	SNP	G	G	A			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr20:1902301G>A	ENST00000358771.4	+	3	849	c.697G>A	c.(697-699)Gtc>Atc	p.V233I	SIRPA_ENST00000356025.3_Missense_Mutation_p.V233I|SIRPA_ENST00000400068.3_Missense_Mutation_p.V233I	NM_001040023.1	NP_001035112.1	P78324	SHPS1_HUMAN	signal-regulatory protein alpha	233	Ig-like C1-type 1.				blood coagulation|cell adhesion|cell junction assembly|leukocyte migration	integral to membrane|plasma membrane	SH3 domain binding	p.V233I(1)		cervix(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(13)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(1)	21				Colorectal(46;0.018)|READ - Rectum adenocarcinoma(1;0.0556)		GGTGGCCCACGTCACCTTGCA	0.617000													3	59					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170134406	170134406	+	Missense_Mutation	SNP	C	C	T			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr2:170134406C>T	ENST00000263816.3	-	13	1906	c.1621G>A	c.(1621-1623)Gca>Aca	p.A541T	LRP2_ENST00000443831.1_Intron	NM_004525.2	NP_004516.2	P98164	LRP2_HUMAN	low density lipoprotein receptor-related protein 2	541					hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			biliary_tract(1)|breast(16)|central_nervous_system(6)|cervix(2)|endometrium(24)|haematopoietic_and_lymphoid_tissue(2)|kidney(17)|large_intestine(70)|liver(1)|lung(117)|ovary(19)|pancreas(1)|prostate(2)|skin(17)|upper_aerodigestive_tract(7)|urinary_tract(13)	315				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCCATGAATGCCCTTTCCAGC	0.423000													4	108					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73478019	73478019	+	Missense_Mutation	SNP	C	C	A			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr7:73478019C>A	ENST00000252034.7	+	29	2386	c.1987C>A	c.(1987-1989)Ctt>Att	p.L663I	ELN_ENST00000320492.7_Missense_Mutation_p.L582I|ELN_ENST00000380584.4_Missense_Mutation_p.L615I|ELN_ENST00000358929.4_Missense_Mutation_p.L731I|ELN_ENST00000380575.4_Missense_Mutation_p.L634I|ELN_ENST00000380562.4_Missense_Mutation_p.L669I|ELN_ENST00000445912.1_Missense_Mutation_p.L663I|ELN_ENST00000429192.1_Missense_Mutation_p.L649I|ELN_ENST00000458204.1_Missense_Mutation_p.L653I|ELN_ENST00000357036.5_Missense_Mutation_p.L668I|ELN_ENST00000320399.6_Missense_Mutation_p.L696I|ELN_ENST00000380576.5_Missense_Mutation_p.L644I|ELN_ENST00000380553.4_Missense_Mutation_p.L527I|ELN_ENST00000414324.1_Missense_Mutation_p.L639I	NM_000501.2	NP_000492.2	P15502	ELN_HUMAN	elastin	725	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(10)|ovary(4)|pancreas(2)|prostate(1)|skin(2)|stomach(1)	32		Lung NSC(55;0.159)			Rofecoxib(DB00533)	TGTTGGGGGCCTTGGAGGTGA	0.572000			T	PAX5	B-ALL		"""Supravalvular Aortic Stenosis, Cutis laxa , Williams-Beuren Syndrome"""						4	84					0.150653	0.155513	1	1	0
HLA-V	0	broad.mit.edu	37	6	29760353	29760373	+	RNA	DEL	GCGGGCGCCGTGGATGGAGCA	GCGGGCGCCGTGGATGGAGCA	-	rs74661005	by1000genomes	TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr6:29760353_29760373delGCGGGCGCCGTGGATGGAGCA	ENST00000457107.1	+	0	223_243																											GGATGGAGCCGCGGGCGCCGTGGATGGAGCAGGAGGGGCCG	0.674													2	4	---	---	---	---					
PRB2	653247	broad.mit.edu	37	12	11546506	11546508	+	In_Frame_Del	DEL	TTG	TTG	-			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr12:11546506_11546508delTTG	ENST00000389362.4	-	3	539_541	c.504_506delCAA	c.(502-507)aag>aa	p.NK168del	PRB1_ENST00000546254.1_Intron	NM_006248.3	NP_006239.3			proline-rich protein BstNI subfamily 2											NS(1)|breast(1)|endometrium(2)|kidney(3)|large_intestine(3)|lung(14)|pancreas(1)|prostate(5)|skin(4)|stomach(2)|urinary_tract(1)	37		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			ACTTCGGGACTTGTTGTCTCCTT	0.596													8	232	---	---	---	---					
RP11-597A11.1	0	broad.mit.edu	37	14	20086382	20086383	+	RNA	INS	-	-	AAAA			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr14:20086382_20086383insAAAA	ENST00000548261.1	+	0	135																											TCTTACAAGGTAAAAAAAATGA	0.312													4	8	---	---	---	---					
CSPG4P5	0	broad.mit.edu	37	15	84957480	84957499	+	RNA	DEL	GGCCCCACATCCATTGAGAA	GGCCCCACATCCATTGAGAA	-			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr15:84957480_84957499delGGCCCCACATCCATTGAGAA	ENST00000558801.1	-	0	7230_7249																											TGTGTGCACTGGCCCCACATCCATTGAGAAGGCCCCACAT	0.586													4	3	---	---	---	---					
AC005176.2	0	broad.mit.edu	37	19	40131120	40131120	+	RNA	DEL	C	C	-			TCGA-EJ-AB20-01A-12D-A41K-08	TCGA-EJ-AB20-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	42430570-8b50-44a2-88bc-57b1aab9fad7	aad0c72f-096f-4d7b-8cf7-46c5ab0939d5	g.chr19:40131120delC	ENST00000594263.1	+	0	1291					NR_026870.1																						TCAGCAATGACCCAGAGCTGC	0.522													2	4	---	---	---	---					
