Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ANKRD40	91369	broad.mit.edu	37	17	48777244	48777244	+	Missense_Mutation	SNP	T	T	A	rs17358273		TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr17:48777244T>A	ENST00000285243.6	-	3	563	c.294A>T	c.(292-294)gaA>gaT	p.E98D		NM_052855.3	NP_443087.1	Q6AI12	ANR40_HUMAN	ankyrin repeat domain 40	98										breast(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(3)|lung(2)|skin(1)|urinary_tract(1)	11			BRCA - Breast invasive adenocarcinoma(22;2.03e-09)			catcatcatcTTCTTCTTCCA	0.398000													4	15					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8161784	8161784	+	Silent	SNP	C	C	T	rs80293030	byFrequency	TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr19:8161784C>T	ENST00000600128.1	-	43	5808	c.5394G>A	c.(5392-5394)tcG>tcA	p.S1798S	FBN3_ENST00000601739.1_Silent_p.S1798S|FBN3_ENST00000270509.2_Silent_p.S1798S			Q75N90	FBN3_HUMAN	fibrillin 3	1798	EGF-like 27; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent	p.S1798S(1)		NS(1)|breast(9)|central_nervous_system(2)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(8)|large_intestine(15)|lung(53)|ovary(7)|pancreas(2)|prostate(3)|skin(10)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(2)	132						CCCCGCCTGGCGACAGTTTGT	0.617000													14	43					0	0	1	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030303	95030303	+	Missense_Mutation	SNP	G	G	A			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr14:95030303G>A	ENST00000557004.1	+	2	905	c.484G>A	c.(484-486)Gtc>Atc	p.V162I	SERPINA4_ENST00000555095.1_Missense_Mutation_p.V162I|SERPINA4_ENST00000298841.5_Missense_Mutation_p.V162I|SERPINA5_ENST00000553780.1_Intron			P29622	KAIN_HUMAN	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4	162					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			breast(2)|endometrium(1)|kidney(1)|large_intestine(9)|lung(28)|ovary(3)|skin(1)|urinary_tract(1)	46				COAD - Colon adenocarcinoma(157;0.211)		CACCATGGCCGTCTATGAGGC	0.522000													46	94					0	0	1	0	0
KIAA0907	22889	broad.mit.edu	37	1	155896893	155896893	+	Splice_Site	SNP	A	A	C			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr1:155896893A>C	ENST00000368320.3	-	5	543		c.e5+1		KIAA0907_ENST00000368319.3_Splice_Site|KIAA0907_ENST00000368321.3_Splice_Site|KIAA0907_ENST00000482337.1_Splice_Site			Q7Z7F0	K0907_HUMAN	KIAA0907											breast(1)|endometrium(2)|kidney(1)|large_intestine(4)|liver(1)|lung(11)|urinary_tract(1)	21	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			AACATTACTTACTGTCCACTA	0.423000													4	86					0	0	1	0	0
GRM1	2911	broad.mit.edu	37	6	146625931	146625931	+	Missense_Mutation	SNP	C	C	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr6:146625931C>T	ENST00000392299.2	+	4	1605	c.1135C>T	c.(1135-1137)Cgc>Tgc	p.R379C	GRM1_ENST00000355289.4_Missense_Mutation_p.R379C|GRM1_ENST00000507907.1_Missense_Mutation_p.R379C|GRM1_ENST00000492807.2_Missense_Mutation_p.R379C|GRM1_ENST00000361719.2_Missense_Mutation_p.R379C|GRM1_ENST00000282753.1_Missense_Mutation_p.R379C			Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1	379					synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			NS(2)|breast(5)|central_nervous_system(3)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(23)|lung(54)|ovary(7)|pancreas(2)|prostate(5)|skin(7)|upper_aerodigestive_tract(4)|urinary_tract(1)	126		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GTTCCAGTGCCGCCTTCCAGG	0.458000													14	36					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132547093	132547093	+	Silent	SNP	A	A	G	rs60608267	by1000genomes	TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr12:132547093A>G	ENST00000333577.4	+	48	8398	c.8289A>G	c.(8287-8289)caA>caG	p.Q2763Q	EP400_ENST00000330386.6_Silent_p.Q2646Q|EP400_ENST00000389561.2_Silent_p.Q2727Q|EP400_ENST00000332482.4_Silent_p.Q2690Q|EP400_ENST00000389562.2_Silent_p.Q2726Q			Q96L91	EP400_HUMAN	E1A binding protein p400	2763	Interaction with ZNF42 (By similarity).|Poly-Gln.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	p.Q2726Q(9)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcaacaacagcagcagc	0.567000													3	27					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237586430	237586430	+	Missense_Mutation	SNP	G	G	A			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr1:237586430G>A	ENST00000366574.2	+	12	1204	c.887G>A	c.(886-888)cGa>cAa	p.R296Q	RYR2_ENST00000542537.1_Missense_Mutation_p.R280Q|RYR2_ENST00000360064.6_Missense_Mutation_p.R294Q	NM_001035.2	NP_001026.2	Q92736	RYR2_HUMAN	ryanodine receptor 2 (cardiac)	296	MIR 4.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			NS(4)|breast(8)|central_nervous_system(11)|cervix(2)|endometrium(39)|haematopoietic_and_lymphoid_tissue(5)|kidney(17)|large_intestine(83)|liver(4)|lung(353)|ovary(18)|pancreas(5)|prostate(12)|skin(8)|stomach(1)|upper_aerodigestive_tract(12)|urinary_tract(4)	586	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CAGCCATTCCGACTACGCCAT	0.418000													5	60					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11736314	11736314	+	Missense_Mutation	SNP	T	T	C			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr2:11736314T>C	ENST00000381486.2	+	13	2203	c.1903T>C	c.(1903-1905)Tct>Cct	p.S635P	GREB1_ENST00000234142.5_Missense_Mutation_p.S635P	NM_014668.3	NP_055483.2	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	635						integral to membrane				breast(3)|central_nervous_system(2)|endometrium(2)|kidney(4)|large_intestine(9)|lung(9)|ovary(1)	30	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		CGCTGCCTCTTCTGTCACTAA	0.478000													6	66					0	0	1	0	0
OR5F1	338674	broad.mit.edu	37	11	55761635	55761635	+	Missense_Mutation	SNP	A	A	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr11:55761635A>T	ENST00000278409.1	-	1	466	c.467T>A	c.(466-468)tTc>tAc	p.F156Y		NM_003697.1	NP_003688.1	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F, member 1	156					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(6)|kidney(1)|large_intestine(11)|liver(1)|lung(33)|ovary(2)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	58	Esophageal squamous(21;0.00448)					GTTGACCATGAAGTTCAGCAA	0.502000													7	64					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr12:132547087G>A	ENST00000333577.4	+	48	8392	c.8283G>A	c.(8281-8283)caG>caA	p.Q2761Q	EP400_ENST00000330386.6_Silent_p.Q2644Q|EP400_ENST00000389561.2_Silent_p.Q2725Q|EP400_ENST00000332482.4_Silent_p.Q2688Q|EP400_ENST00000389562.2_Silent_p.Q2724Q			Q96L91	EP400_HUMAN	E1A binding protein p400	2761	Interaction with ZNF42 (By similarity).|Poly-Gln.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	p.Q2724Q(16)|p.Q2725Q(1)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcagcagcaacaacagc	0.562000													3	27					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593016	96593016	+	Missense_Mutation	SNP	C	C	A	rs79307257	by1000genomes	TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr2:96593016C>A	ENST00000456556.1	-	28	1969	c.1885G>T	c.(1885-1887)Gat>Tat	p.D629Y						ankyrin repeat domain 36C									p.D629Y(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						GAAACAGAATCTTTCTCATCA	0.318000													3	48					0.00024832	0.000265251	1	1	0
FAT3	120114	broad.mit.edu	37	11	92495335	92495335	+	Splice_Site	SNP	C	C	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr11:92495335C>T	ENST00000298047.6	+	4	4000	c.3984_splice	c.e4+1	p.T1328_splice	RP11-203F8.1_ENST00000529884.1_RNA|FAT3_ENST00000409404.2_Splice_Site_p.T1328_splice|FAT3_ENST00000525166.1_Splice_Site_p.T1178_splice			Q8TDW7	FAT3_HUMAN	FAT atypical cadherin 3	1328	Cadherin 12.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(2)|endometrium(10)|kidney(4)|large_intestine(11)|liver(2)|lung(37)|ovary(5)|pancreas(1)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(5)	85		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GACATCCTAACGGTAAGATCT	0.398000										TCGA Ovarian(4;0.039)			3	28					0	0	1	0	0
ZNF385D	79750	broad.mit.edu	37	3	21478535	21478535	+	Silent	SNP	T	T	G			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr3:21478535T>G	ENST00000281523.2	-	5	1118	c.600A>C	c.(598-600)gcA>gcC	p.A200A	ZNF385D_ENST00000494118.1_5'UTR	NM_024697.2	NP_078973.1	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	200						nucleus	nucleic acid binding|zinc ion binding			NS(2)|breast(2)|endometrium(3)|kidney(2)|large_intestine(13)|lung(18)|ovary(1)|prostate(1)|skin(4)	46						GAAGCCGTTTTGCCTTTTCTT	0.478000													8	82					0	0	1	0	0
EIF4ENIF1	56478	broad.mit.edu	37	22	31854494	31854494	+	Missense_Mutation	SNP	G	G	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr22:31854494G>T	ENST00000397525.1	-	7	1153	c.930C>A	c.(928-930)ttC>ttA	p.F310L	EIF4ENIF1_ENST00000344710.5_Missense_Mutation_p.F147L|EIF4ENIF1_ENST00000330125.5_Missense_Mutation_p.F310L|RP11-247I13.11_ENST00000464523.1_RNA|EIF4ENIF1_ENST00000397523.1_Missense_Mutation_p.F310L	NM_001164501.1	NP_001157973.1	Q9NRA8	4ET_HUMAN	eukaryotic translation initiation factor 4E nuclear import factor 1	310						nucleus	protein binding|protein transporter activity	p.F310L(1)		autonomic_ganglia(1)|breast(3)|central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(9)|lung(8)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	36						CAAGGTTAAAGAACTCATTAA	0.468000													4	36					0.00909568	0.00909568	1	1	0
SNHG14	0	broad.mit.edu	37	15	25232034	25232034	+	RNA	SNP	T	T	C	rs7171986		TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr15:25232034T>C	ENST00000551631.2	+	0	887				SNHG14_ENST00000551361.1_RNA	NR_001293.1																						cacgtgtgtgtgtgtgtgtgt	0.443000													4	26					0	0	1	0	0
SHC1	6464	broad.mit.edu	37	1	154940985	154940985	+	Missense_Mutation	SNP	C	C	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr1:154940985C>T	ENST00000448116.2	-	4	956	c.736G>A	c.(736-738)Gca>Aca	p.A246T	SHC1_ENST00000368445.5_Missense_Mutation_p.A246T|SHC1_ENST00000368450.1_Missense_Mutation_p.A136T|SHC1_ENST00000368453.4_Missense_Mutation_p.A136T|SHC1_ENST00000606391.1_Missense_Mutation_p.A47T|SHC1_ENST00000368449.4_Missense_Mutation_p.A17T	NM_001130040.1	NP_001123512.1	P29353	SHC1_HUMAN	SHC (Src homology 2 domain containing) transforming protein 1	246	PID.				activation of MAPK activity|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|positive regulation of DNA replication|Ras protein signal transduction|regulation of epidermal growth factor receptor activity|regulation of growth	cytosol|mitochondrial matrix|Shc-EGFR complex	epidermal growth factor receptor binding|insulin receptor binding|insulin-like growth factor receptor binding|phospholipid binding|protein binding|transmembrane receptor protein tyrosine kinase adaptor activity			breast(1)|endometrium(5)|kidney(2)|large_intestine(2)|lung(8)|prostate(1)|skin(1)	20	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			TTGCAGTCTGCGGCCATGAGG	0.552000													5	235					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31414872	31414872	+	Nonsense_Mutation	SNP	C	C	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr16:31414872C>T	ENST00000389202.2	+	7	659	c.610C>T	c.(610-612)Caa>Taa	p.Q204*	RP11-120K18.2_ENST00000567545.1_RNA	NM_005353.2	NP_005344.2	Q13349	ITAD_HUMAN	integrin, alpha D	204	VWFA.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			breast(1)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(10)|liver(2)|lung(43)|ovary(1)|prostate(2)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	71						CACCTTCACCCAATTCCGGAC	0.577000													6	68					0	0	1	0	0
TSGA13	114960	broad.mit.edu	37	7	130356540	130356540	+	Missense_Mutation	SNP	T	T	C			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr7:130356540T>C	ENST00000456951.1	-	8	1470	c.619A>G	c.(619-621)Acc>Gcc	p.T207A	TSGA13_ENST00000356588.3_Missense_Mutation_p.T207A			Q96PP4	TSG13_HUMAN	testis specific, 13	207										endometrium(1)|kidney(3)|large_intestine(3)|lung(6)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	18	Melanoma(18;0.0435)					GGAGCAAAGGTGAGCTGAGGG	0.423000													25	115					0	0	1	0	0
CNR1	0	broad.mit.edu	37	6	88854286	88854286	+	Silent	SNP	C	C	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr6:88854286C>T	ENST00000537554.1	-	2	4270	c.708G>A	c.(706-708)gcG>gcA	p.A236A	CNR1_ENST00000549890.1_Silent_p.A236A|CNR1_ENST00000468898.1_Silent_p.A203A|CNR1_ENST00000369501.2_Silent_p.A236A|CNR1_ENST00000362094.5_3'UTR|CNR1_ENST00000369499.2_Silent_p.A236A|CNR1_ENST00000535130.1_Silent_p.A236A|CNR1_ENST00000428600.2_Silent_p.A236A|CNR1_ENST00000549716.1_Silent_p.A175A	NM_001160226.1|NM_001160258.1	NP_001153698.1|NP_001153730.1	P21554	CNR1_HUMAN	cannabinoid receptor 1 (brain)	236					G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding	p.A236A(2)		breast(2)|endometrium(3)|kidney(1)|large_intestine(7)|liver(1)|lung(11)|prostate(1)|skin(10)|urinary_tract(1)	37		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	TCAGGCAAAACGCCACCACGG	0.562000													3	42					0	0	1	0	0
ERCC6-PGBD3	0	broad.mit.edu	37	10	50724106	50724106	+	Missense_Mutation	SNP	T	T	C			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr10:50724106T>C	ENST00000515869.1	-	6	2579	c.2459A>G	c.(2458-2460)aAt>aGt	p.N820S	PGBD3_ENST00000603152.1_Missense_Mutation_p.N820S|PGBD3_ENST00000508005.2_Missense_Mutation_p.N352S|ERCC6_ENST00000355832.5_Intron|ERCC6-PGBD3_ENST00000447839.2_Missense_Mutation_p.N820S|PGBD3_ENST00000374127.3_Missense_Mutation_p.N352S	NM_001277059.1	NP_001263988.1																					GAAAAAGTTATTGAATACAAA	0.423000													19	67					0	0	1	0	0
ADAM21P1	0	broad.mit.edu	37	14	70714259	70714259	+	RNA	SNP	A	A	G	rs7144638	by1000genomes	TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr14:70714259A>G	ENST00000530196.1	-	0	259					NR_003951.1																						CACCACTTCCAGGGAAGTGAA	0.527000													4	96					0	0	1	0	0
BTN3A3	10384	broad.mit.edu	37	6	26452501	26452501	+	Silent	SNP	C	C	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr6:26452501C>T	ENST00000244519.2	+	11	1860	c.1617C>T	c.(1615-1617)ggC>ggT	p.G539G	BTN3A3_ENST00000339789.4_Silent_p.G497G|BTN3A3_ENST00000361232.3_Silent_p.G490G	NM_006994.4	NP_008925.1	O00478	BT3A3_HUMAN	butyrophilin, subfamily 3, member A3	539						integral to membrane				cervix(1)|endometrium(3)|large_intestine(4)|liver(1)|lung(15)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(4)	30						TGACCCCGGGCTTAGCTAATG	0.547000													4	38					0	0	1	0	0
TUBB8P7	0	broad.mit.edu	37	16	90161618	90161618	+	RNA	SNP	C	C	T	rs13338202	by1000genomes	TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr16:90161618C>T	ENST00000564451.1	+	0	971				TUBB8P7_ENST00000567960.1_RNA														p.D118D(2)									CAGTGATGGACGTTGTCAGAA	0.607000													5	36					0	0	1	0	0
CCR9	10803	broad.mit.edu	37	3	45943240	45943240	+	Silent	SNP	G	G	C			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr3:45943240G>C	ENST00000357632.2	+	3	1140	c.960G>C	c.(958-960)gtG>gtC	p.V320V	CCR9_ENST00000422395.1_3'UTR|CCR9_ENST00000395963.2_Silent_p.V308V|CCR9_ENST00000355983.2_Silent_p.V308V|LZTFL1_ENST00000539217.1_Intron|LZTFL1_ENST00000536047.1_Intron	NM_001256369.1|NM_031200.2	NP_001243298.1|NP_112477.1	P51686	CCR9_HUMAN	chemokine (C-C motif) receptor 9	320					cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane				breast(1)|endometrium(4)|large_intestine(8)|lung(2)|ovary(2)|prostate(2)|skin(1)	20				BRCA - Breast invasive adenocarcinoma(193;0.00118)|KIRC - Kidney renal clear cell carcinoma(197;0.0182)|Kidney(197;0.0214)		ATGTTTTTGTGGGTGAGAGAT	0.517000													20	44					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6202222	6202222	+	Missense_Mutation	SNP	G	G	A			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr1:6202222G>A	ENST00000262450.3	-	15	2501	c.2402C>T	c.(2401-2403)gCc>gTc	p.A801V	CHD5_ENST00000378021.1_5'UTR	NM_015557.2	NP_056372.1	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	801	Helicase ATP-binding.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			breast(3)|central_nervous_system(3)|liver(1)|lung(1)|ovary(4)|pancreas(1)|skin(1)|upper_aerodigestive_tract(2)	16	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ACTCCGAATGGCGTTGTCCTC	0.577000													15	199					0	0	1	0	0
KRT36	8689	broad.mit.edu	37	17	39643395	39643395	+	Missense_Mutation	SNP	C	C	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr17:39643395C>T	ENST00000393986.2	-	7	1077	c.865G>A	c.(865-867)Gaa>Aaa	p.E289K	KRT36_ENST00000328119.6_Missense_Mutation_p.E339K			O76013	KRT36_HUMAN	keratin 36	339	Coil 2.|Rod.					intermediate filament	protein binding|structural constituent of epidermis			breast(2)|cervix(1)|kidney(2)|large_intestine(3)|lung(8)|skin(1)	17		Breast(137;0.000286)				GCCTCGGTTTCGGCCAGGGTG	0.622000													9	85					0	0	1	0	0
LHX4	89884	broad.mit.edu	37	1	180241031	180241031	+	Missense_Mutation	SNP	G	G	A	rs138365963		TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr1:180241031G>A	ENST00000263726.2	+	5	912	c.668G>A	c.(667-669)cGc>cAc	p.R223H	RP5-1180C10.2_ENST00000415414.1_RNA	NM_033343.3	NP_203129.1	Q969G2	LHX4_HUMAN	LIM homeobox 4	223						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			endometrium(2)|large_intestine(1)|lung(10)|ovary(1)|prostate(1)|skin(1)	16						GGGCGGCACCGCTGGGGGCAG	0.582000													5	93					0	0	1	0	0
SPERT	220082	broad.mit.edu	37	13	46287491	46287491	+	Missense_Mutation	SNP	G	G	A			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr13:46287491G>A	ENST00000378966.3	+	2	639	c.223G>A	c.(223-225)Gac>Aac	p.D75N	SPERT_ENST00000310521.1_Missense_Mutation_p.D111N			Q8NA61	SPERT_HUMAN	spermatid associated	111						cytoplasmic membrane-bounded vesicle				NS(1)|central_nervous_system(1)|large_intestine(5)|lung(5)|ovary(1)|pancreas(1)|prostate(1)	15		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		GTCCCAGGCCGACCTGGAGCT	0.652000													6	46					0	0	1	0	0
AASS	10157	broad.mit.edu	37	7	121726065	121726065	+	Splice_Site	SNP	C	C	A			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr7:121726065C>A	ENST00000393376.1	-	18	2280		c.e18+1		AASS_ENST00000417368.2_Splice_Site|AASS_ENST00000473553.1_Splice_Site			Q9UDR5	AASS_HUMAN	aminoadipate-semialdehyde synthase						protein tetramerization	mitochondrial matrix	binding|saccharopine dehydrogenase (NAD+, L-glutamate-forming) activity|saccharopine dehydrogenase (NADP+, L-lysine-forming) activity			autonomic_ganglia(1)|breast(2)|endometrium(3)|kidney(6)|large_intestine(12)|lung(27)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(1)	54					L-Glutamic Acid(DB00142)|NADH(DB00157)	CAGCTGCTTACCTTATATCTC	0.368000													17	69					4.96729e-08	5.42936e-08	1	1	0
MAMDC4	158056	broad.mit.edu	37	9	139748340	139748340	+	Missense_Mutation	SNP	G	G	A			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr9:139748340G>A	ENST00000445819.1	+	5	616	c.566G>A	c.(565-567)cGc>cAc	p.R189H	MAMDC4_ENST00000317446.2_Missense_Mutation_p.R189H|MAMDC4_ENST00000485732.1_3'UTR			Q6UXC1	AEGP_HUMAN	MAM domain containing 4	189	MAM 1.				protein transport	integral to membrane				breast(4)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(1)|lung(4)|pancreas(1)|prostate(2)|upper_aerodigestive_tract(2)	19	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		ACCACAGGCCGCATCCGGGGT	0.662000													3	55					0	0	1	0	0
TMEM164	84187	broad.mit.edu	37	X	109416587	109416587	+	Missense_Mutation	SNP	G	G	C			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chrX:109416587G>C	ENST00000372073.1	+	7	1138	c.802G>C	c.(802-804)Ggg>Cgg	p.G268R	TMEM164_ENST00000464177.1_3'UTR|TMEM164_ENST00000372072.3_Missense_Mutation_p.G119R|TMEM164_ENST00000288381.4_Missense_Mutation_p.G229R|TMEM164_ENST00000372068.2_Missense_Mutation_p.G268R			Q5U3C3	TM164_HUMAN	transmembrane protein 164	268						integral to membrane				cervix(1)|endometrium(1)|large_intestine(5)|lung(6)|skin(1)	14						CATGACCCACGGGAAGCTGGT	0.532000													19	29					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593000	96593000	+	Missense_Mutation	SNP	A	A	G	rs111976783		TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr2:96593000A>G	ENST00000456556.1	-	28	1985	c.1901T>C	c.(1900-1902)aTa>aCa	p.I634T						ankyrin repeat domain 36C									p.I634T(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TTCTGTGGCTATATTTGAAAC	0.338000													3	43					0	0	1	0	0
AC008103.5	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	T	C			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr22:18844763T>C	ENST00000412938.1	+	0	3013																											TCACAGCCTCTGAGGGCAGCA	0.562000													3	14					0	0	1	0	0
CDKL2	8999	broad.mit.edu	37	4	76522237	76522237	+	Missense_Mutation	SNP	C	C	T	rs142919399	by1000genomes	TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr4:76522237C>T	ENST00000429927.2	-	9	1907	c.1204G>A	c.(1204-1206)Gtg>Atg	p.V402M	CDKL2_ENST00000307465.4_Missense_Mutation_p.V402M	NM_003948.3	NP_003939.1	Q92772	CDKL2_HUMAN	cyclin-dependent kinase-like 2 (CDC2-related kinase)	402					sex differentiation|signal transduction	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			breast(3)|endometrium(1)|large_intestine(4)|lung(6)|ovary(2)|prostate(2)|skin(2)|stomach(2)	22			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			GTGTGGTCCACGCTGACATTG	0.478000													9	103					0	0	1	0	0
ANKRD20A8P	0	broad.mit.edu	37	2	95514963	95514963	+	RNA	SNP	G	G	A	rs114749649	by1000genomes	TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr2:95514963G>A	ENST00000432432.2	-	0	694					NR_040113.1																						GCCTATCAACGGCATGTGTAC	0.328000													4	211					0	0	1	0	0
RANBP2	5903	broad.mit.edu	37	2	109365426	109365426	+	Missense_Mutation	SNP	A	A	G	rs2693112		TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr2:109365426A>G	ENST00000283195.6	+	9	1240	c.1114A>G	c.(1114-1116)Att>Gtt	p.I372V		NM_006267.4	NP_006258.3	P49792	RBP2_HUMAN	RAN binding protein 2	372					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(34)	NS(1)|biliary_tract(1)|breast(3)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(21)|large_intestine(19)|lung(51)|pancreas(1)|prostate(8)|skin(7)|upper_aerodigestive_tract(2)|urinary_tract(1)	129						TTTAAAAGAGATTGTTGAAAC	0.343000													6	293					0	0	1	0	0
RANBP2	5903	broad.mit.edu	37	2	109365424	109365424	+	Missense_Mutation	SNP	A	A	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr2:109365424A>T	ENST00000283195.6	+	9	1238	c.1112A>T	c.(1111-1113)gAg>gTg	p.E371V		NM_006267.4	NP_006258.3	P49792	RBP2_HUMAN	RAN binding protein 2	371					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(34)	NS(1)|biliary_tract(1)|breast(3)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(21)|large_intestine(19)|lung(51)|pancreas(1)|prostate(8)|skin(7)|upper_aerodigestive_tract(2)|urinary_tract(1)	129						TTTTTAAAAGAGATTGTTGAA	0.338000													6	290					0	0	1	0	0
CATSPERD	257062	broad.mit.edu	37	19	5770982	5770982	+	Silent	SNP	G	G	A			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr19:5770982G>A	ENST00000381624.3	+	19	1723	c.1662G>A	c.(1660-1662)ggG>ggA	p.G554G	CATSPERD_ENST00000309164.7_3'UTR|CATSPERD_ENST00000381614.2_Silent_p.G212G	NM_152784.3	NP_689997.3	Q86XM0	TM146_HUMAN	catsper channel auxiliary subunit delta	554						integral to membrane											GCTTCCAGGGGCAGCAGTCCT	0.587000													6	84					0	0	1	0	0
FGF21	26291	broad.mit.edu	37	19	49261406	49261406	+	Missense_Mutation	SNP	G	G	A			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr19:49261406G>A	ENST00000593756.1	+	4	1131	c.559G>A	c.(559-561)Gat>Aat	p.D187N	FGF21_ENST00000222157.3_Missense_Mutation_p.D187N			Q9NSA1	FGF21_HUMAN	fibroblast growth factor 21	187					cell-cell signaling|positive regulation of ERK1 and ERK2 cascade|positive regulation of glucose import	extracellular region|soluble fraction	growth factor activity			breast(1)|cervix(2)|kidney(1)|large_intestine(1)|lung(2)|upper_aerodigestive_tract(1)	8		all_lung(116;1.7e-06)|all_epithelial(76;3.52e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		CCAGCCCCCCGATGTGGGCTC	0.682000													3	23					0	0	1	0	0
USP34	9736	broad.mit.edu	37	2	61492578	61492580	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr2:61492578_61492580delTGC	ENST00000398571.2	-	43	5806_5808	c.5730_5732delGCA	c.(5728-5733)caa>ca	p.QQ1910del		NM_014709.3	NP_055524.3	Q70CQ2	UBP34_HUMAN	ubiquitin specific peptidase 34	1910					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			autonomic_ganglia(1)|breast(14)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(24)|lung(52)|ovary(8)|prostate(10)|skin(6)|urinary_tract(2)	138			Epithelial(17;0.229)			CATATAAAGTTGCTGAATAGTAG	0.360													21	84	---	---	---	---					
ZAN	7455	broad.mit.edu	37	7	100369721	100369721	+	RNA	DEL	T	T	-			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr7:100369721delT	ENST00000542585.1	+	0	5573				ZAN_ENST00000421100.1_RNA|ZAN_ENST00000538115.1_RNA|ZAN_ENST00000349350.6_RNA|ZAN_ENST00000449052.1_RNA|ZAN_ENST00000546213.1_RNA|ZAN_ENST00000546292.1_RNA|ZAN_ENST00000427578.1_RNA|ZAN_ENST00000443370.1_RNA|ZAN_ENST00000348028.3_RNA	NM_003386.1	NP_003377.1	Q9Y493	ZAN_HUMAN	zonadhesin (gene/pseudogene)						binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				NS(2)|breast(3)|central_nervous_system(3)|endometrium(21)|kidney(6)|large_intestine(18)|lung(60)|ovary(4)|pancreas(3)|prostate(5)|skin(8)|stomach(3)|upper_aerodigestive_tract(3)	139	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ctctaaattcttttttttttt	0.532													2	4	---	---	---	---					
IQSEC3	440073	broad.mit.edu	37	12	248285	248285	+	Frame_Shift_Del	DEL	G	G	-			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr12:248285delG	ENST00000538872.1	+	4	1874	c.1756delG	c.(1756-1758)ggfs	p.G586fs	IQSEC3_ENST00000326261.4_Frame_Shift_Del_p.G586fs|RP11-598F7.4_ENST00000505893.2_RNA|IQSEC3_ENST00000382841.2_Frame_Shift_Del_p.G283fs			Q9UPP2	IQEC3_HUMAN	IQ motif and Sec7 domain 3	586					regulation of ARF protein signal transduction	cytoplasm	ARF guanyl-nucleotide exchange factor activity			central_nervous_system(2)|endometrium(2)|kidney(1)|large_intestine(6)|lung(18)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	35	all_cancers(10;0.016)|all_lung(10;0.0222)|all_epithelial(11;0.0262)|Lung NSC(10;0.031)		OV - Ovarian serous cystadenocarcinoma(31;0.00456)	LUAD - Lung adenocarcinoma(1;0.172)|Lung(1;0.179)		ggTGGGGAGAGGGGCCGAGGC	0.692													2	4	---	---	---	---					
GOLGA8A	23015	broad.mit.edu	37	15	34679126	34679127	+	Splice_Site	INS	-	-	T			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr15:34679126_34679127insT	ENST00000432566.2	-	2	75		c.e2-1		GOLGA8A_ENST00000360553.3_Intron|GOLGA8A_ENST00000359187.4_Intron|GOLGA8A_ENST00000543376.1_5'UTR			A7E2F4	GOG8A_HUMAN	golgin A8 family, member A							Golgi cisterna membrane							all_lung(180;2.78e-08)		all cancers(64;8.27e-19)|GBM - Glioblastoma multiforme(113;6.98e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		ATGTAGGGCCCTCCCCGTGGAT	0.594													3	6	---	---	---	---					
DNM1P47	0	broad.mit.edu	37	15	102293062	102293064	+	RNA	DEL	CTC	CTC	-	rs4965539		TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr15:102293062_102293064delCTC	ENST00000561463.1	+	0	1108_1110																											AGTTCATCTTCTCAGAGCTGCTG	0.576													4	7	---	---	---	---					
MYH4	4622	broad.mit.edu	37	17	10352207	10352218	+	In_Frame_Del	DEL	CGAGAGCTATGC	CGAGAGCTATGC	-			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr17:10352207_10352218delCGAGAGCTATGC	ENST00000255381.2	-	31	4438_4449	c.4328_4339delGCATAGCTCTCG	c.(4327-4341)tat>t	p.CIALD1443del	CTC-297N7.7_ENST00000399342.2_RNA|CTC-297N7.7_ENST00000587182.1_RNA|CTC-297N7.7_ENST00000581304.1_RNA	NM_017533.2	NP_060003.2	Q9Y623	MYH4_HUMAN	myosin, heavy chain 4, skeletal muscle	1443					muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle	p.D1447N(1)		NS(4)|breast(8)|central_nervous_system(2)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(13)|lung(72)|ovary(10)|prostate(7)|skin(9)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	149						TGCTTCTTATCGAGAGCTATGCAGGCAGCATT	0.429													10	65	---	---	---	---					
CDC27	996	broad.mit.edu	37	17	45219612	45219612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr17:45219612delA	ENST00000066544.3	-	11	1454	c.1361delT	c.(1360-1362)cafs	p.L454fs	CDC27_ENST00000531206.1_Frame_Shift_Del_p.L460fs|CDC27_ENST00000527547.1_Frame_Shift_Del_p.L454fs|CDC27_ENST00000446365.2_Frame_Shift_Del_p.L393fs	NM_001114091.1|NM_001256.3	NP_001107563.1|NP_001247.3	P30260	CDC27_HUMAN	cell division cycle 27	454					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			NS(1)|breast(5)|central_nervous_system(3)|cervix(1)|endometrium(2)|kidney(17)|large_intestine(18)|lung(11)|ovary(5)|pancreas(1)|prostate(19)|skin(5)|upper_aerodigestive_tract(2)	90						TGCTTTTTGTAGATTAAAGGC	0.308													10	51	---	---	---	---					
LONP1	9361	broad.mit.edu	37	19	5692212	5692213	+	Frame_Shift_Ins	INS	-	-	AA	rs112807920	byFrequency	TCGA-G9-7509-01A-11D-A41K-08	TCGA-G9-7509-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	ffdfc835-b6f2-4369-9f20-0c2b094020d0	38029fed-8935-4482-a4e6-d0be1258b2e0	g.chr19:5692212_5692213insAA	ENST00000360614.3	-	18	2867_2868	c.2710_2711insTT	c.(2710-2712)cgcfs	p.R904fs	LONP1_ENST00000590729.1_Frame_Shift_Ins_p.R774fs|LONP1_ENST00000540670.2_Frame_Shift_Ins_p.R708fs|LONP1_ENST00000585374.1_Frame_Shift_Ins_p.R790fs|LONP1_ENST00000593119.1_Frame_Shift_Ins_p.R840fs	NM_004793.2	NP_004784.2	P36776	LONM_HUMAN	lon peptidase 1, mitochondrial	904					cellular chaperone-mediated protein complex assembly|cellular response to oxidative stress|misfolded or incompletely synthesized protein catabolic process|mitochondrial DNA metabolic process|oxidation-dependent protein catabolic process|protein homooligomerization|response to hypoxia	mitochondrial nucleoid	ADP binding|ATP binding|ATP-dependent peptidase activity|DNA polymerase binding|G-quadruplex DNA binding|mitochondrial heavy strand promoter anti-sense binding|mitochondrial light strand promoter anti-sense binding|sequence-specific DNA binding|serine-type endopeptidase activity|single-stranded DNA binding|single-stranded RNA binding			breast(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(12)|upper_aerodigestive_tract(1)|urinary_tract(1)	24						CACCCCTGCGCGCTTGGCCTGG	0.649													8	120	---	---	---	---					
