Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ELP2	55250	broad.mit.edu	37	18	33747151	33747151	+	Missense_Mutation	SNP	G	G	A	rs150412497	by1000genomes	TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr18:33747151G>A	ENST00000358232.6	+	19	2105	c.2042G>A	c.(2041-2043)aGc>aAc	p.S681N	ELP2_ENST00000351393.6_Missense_Mutation_p.S655N|ELP2_ENST00000542824.1_Missense_Mutation_p.S611N|ELP2_ENST00000423854.2_Missense_Mutation_p.S611N|ELP2_ENST00000442325.2_Missense_Mutation_p.S746N|ELP2_ENST00000350494.6_Missense_Mutation_p.S676N	NM_018255.2	NP_060725.1	Q6IA86	ELP2_HUMAN	elongator acetyltransferase complex subunit 2	681					regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				NS(1)|breast(4)|kidney(2)|large_intestine(8)|lung(10)|ovary(1)|skin(2)|urinary_tract(2)	30						AGTCCTGACAGCAAGTATTTC	0.289000													4	75					0	0	1	0	0
GCKR	2646	broad.mit.edu	37	2	27746165	27746165	+	Silent	SNP	A	A	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr2:27746165A>T	ENST00000264717.2	+	19	1800	c.1737A>T	c.(1735-1737)ctA>ctT	p.L579L	GCKR_ENST00000424318.2_Silent_p.L389L	NM_001486.3	NP_001477.2	Q14397	GCKR_HUMAN	glucokinase (hexokinase 4) regulator	579					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			breast(2)|endometrium(4)|kidney(2)|large_intestine(4)|liver(2)|lung(13)|ovary(2)	29	Acute lymphoblastic leukemia(172;0.155)					TGAGCCTCCTATTCCGGTGCT	0.592000													8	19					0	0	1	0	0
GAGE2A	729447	broad.mit.edu	37	X	49355893	49355893	+	Missense_Mutation	SNP	C	C	G	rs147803166	by1000genomes	TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chrX:49355893C>G	ENST00000362097.1	+	3	258	c.175C>G	c.(175-177)Cag>Gag	p.Q59E		NM_001127212.1	NP_001120684.1			G antigen 2A									p.Q59E(8)		endometrium(4)	4	Ovarian(276;0.236)					TCAGGAGGGACAGGATGAGGG	0.562000													5	668					0	0	1	0	0
RP11-798G7.5	0	broad.mit.edu	37	17	43596429	43596429	+	RNA	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr17:43596429C>T	ENST00000253803.2	+	0	267																											TCACTTTTTGCCGGTTTTGGC	0.488000													4	171					0	0	1	0	0
SYNCRIP	10492	broad.mit.edu	37	6	86324853	86324853	+	Missense_Mutation	SNP	C	C	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr6:86324853C>A	ENST00000355238.6	-	11	1699	c.1493G>T	c.(1492-1494)aGg>aTg	p.R498M	RP11-321N4.5_ENST00000503906.1_Missense_Mutation_p.G34W|SYNCRIP_ENST00000369622.3_Missense_Mutation_p.R498M	NM_001159673.1|NM_001159674.1|NM_001159676.1|NM_001159677.1|NM_001253771.1	NP_001153145.1|NP_001153146.1|NP_001153148.1|NP_001153149.1|NP_001240700.1	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA interacting protein	498	8 X 3 AA repeats of R-G-G.|Interaction with APOBEC1.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			autonomic_ganglia(1)|breast(2)|central_nervous_system(4)|endometrium(3)|kidney(2)|large_intestine(5)|liver(1)|lung(10)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	33		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		TCTACCACCCCTTCCTCTAGC	0.478000													4	40					1	1	1	1	0
ANKRD27	84079	broad.mit.edu	37	19	33140667	33140667	+	Missense_Mutation	SNP	C	C	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr19:33140667C>G	ENST00000306065.4	-	3	292	c.134G>C	c.(133-135)aGc>aCc	p.S45T	ANKRD27_ENST00000587352.1_Missense_Mutation_p.S45T|ANKRD27_ENST00000586693.2_5'UTR	NM_032139.2	NP_115515.2	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	45					early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			breast(3)|endometrium(7)|kidney(2)|large_intestine(6)|lung(15)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|urinary_tract(2)	42	Esophageal squamous(110;0.137)					CTGGATGCTGCTCGACAGGCT	0.448000													14	135					0	0	1	0	0
FNDC1	84624	broad.mit.edu	37	6	159653589	159653589	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr6:159653589G>A	ENST00000297267.9	+	11	2245	c.2045G>A	c.(2044-2046)cGc>cAc	p.R682H	FNDC1_ENST00000340366.6_Missense_Mutation_p.R619H	NM_032532.2	NP_115921.2	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	682	Ser-rich.					extracellular region		p.R682H(1)		NS(1)|autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|endometrium(16)|haematopoietic_and_lymphoid_tissue(3)|kidney(2)|large_intestine(29)|liver(2)|lung(23)|ovary(3)|pancreas(1)|prostate(5)|skin(1)|upper_aerodigestive_tract(3)	93		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		AGCGTTCTCCGCGACAGAAGC	0.716000													3	34					0	0	1	0	0
MUC4	4585	broad.mit.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	G	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr3:195505836G>C	ENST00000463781.3	-	2	13074	c.12615C>G	c.(12613-12615)caC>caG	p.H4205Q	MUC4_ENST00000349607.4_Intron|MUC4_ENST00000346145.4_Intron|MUC4_ENST00000475231.1_Missense_Mutation_p.H4205Q	NM_018406.6	NP_060876.5	Q99102	MUC4_HUMAN	mucin 4, cell surface associated	968					cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity	p.H4205Q(10)		NS(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(5)|lung(23)|ovary(3)|prostate(8)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	51	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GAGGGGTGGCGTGACCTGTGG	0.597000													4	9					0	0	1	0	0
AGXT2	64902	broad.mit.edu	37	5	35014092	35014092	+	Splice_Site	SNP	C	C	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr5:35014092C>G	ENST00000231420.6	-	10	1296	c.1096_splice	c.e10+1	p.E366_splice		NM_031900.3	NP_114106.1	Q9BYV1	AGT2_HUMAN	alanine--glyoxylate aminotransferase 2	366					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			NS(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(8)|lung(18)|ovary(3)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)	41	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	TGGGTCCTACCTGGAGTGGTT	0.507000													33	45					0	0	1	0	0
FIGN	55137	broad.mit.edu	37	2	164467412	164467412	+	Missense_Mutation	SNP	G	G	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr2:164467412G>C	ENST00000333129.3	-	3	1244	c.930C>G	c.(928-930)aaC>aaG	p.N310K	FIGN_ENST00000409634.1_Intron	NM_018086.2	NP_060556.2	Q5HY92	FIGN_HUMAN	fidgetin	310						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			breast(2)|endometrium(3)|kidney(2)|large_intestine(13)|lung(23)|ovary(1)|prostate(2)|skin(1)	47						TTGCTGAACTGTTTGTCAGAG	0.512000													5	47					0	0	1	0	0
HS3ST6	64711	broad.mit.edu	37	16	1962141	1962141	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr16:1962141G>A	ENST00000454677.2	-	2	595	c.530C>T	c.(529-531)aCg>aTg	p.T177M	HS3ST6_ENST00000443547.1_Missense_Mutation_p.T129M|HS3ST6_ENST00000293937.3_Missense_Mutation_p.T160M			C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	129										endometrium(2)|lung(2)	4						GGCCTCTCGCGTCACGAAGTA	0.677000													7	17					0	0	1	0	0
SEMA4G	57715	broad.mit.edu	37	10	102732921	102732921	+	Missense_Mutation	SNP	C	C	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr10:102732921C>G	ENST00000210633.3	+	2	238	c.160C>G	c.(160-162)Cag>Gag	p.Q54E	SEMA4G_ENST00000519756.1_3'UTR|SEMA4G_ENST00000517724.1_Missense_Mutation_p.Q54E|SEMA4G_ENST00000370250.4_Missense_Mutation_p.Q54E			Q9NTN9	SEM4G_HUMAN	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	54	Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(3)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(9)|lung(5)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	25		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		GGGCCAAGCCCAGAACTACTC	0.627000													9	10					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155237056	155237056	+	Missense_Mutation	SNP	G	G	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr4:155237056G>T	ENST00000357232.3	-	15	3738	c.3739C>A	c.(3739-3741)Cca>Aca	p.P1247T		NM_017639.3	NP_060109.2	Q6V1P9	PCD23_HUMAN	dachsous cadherin-related 2	1247	Cadherin 10.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(3)|endometrium(8)|kidney(5)|large_intestine(54)|lung(63)|ovary(4)|pancreas(1)|prostate(14)|skin(12)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(2)	176	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GAAAGTGCTGGTGTGCCATCA	0.408000													17	23					2.48551e-13	2.74263e-13	1	1	0
FSCB	84075	broad.mit.edu	37	14	44975667	44975667	+	Missense_Mutation	SNP	G	G	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr14:44975667G>T	ENST00000340446.4	-	1	815	c.524C>A	c.(523-525)aCa>aAa	p.T175K		NM_032135.3	NP_115511.3	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	175						cilium				breast(4)|central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(10)|lung(47)|ovary(2)|pancreas(1)|prostate(5)|skin(5)|stomach(2)|upper_aerodigestive_tract(4)|urinary_tract(1)	89				GBM - Glioblastoma multiforme(112;0.128)		CTTTGACTTTGTAGAAGAACT	0.388000													29	136					1.16021e-09	1.25853e-09	1	1	0
ANKRD36C	400986	broad.mit.edu	37	2	96593016	96593016	+	Missense_Mutation	SNP	C	C	A	rs79307257	by1000genomes	TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr2:96593016C>A	ENST00000456556.1	-	28	1969	c.1885G>T	c.(1885-1887)Gat>Tat	p.D629Y						ankyrin repeat domain 36C									p.D629Y(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						GAAACAGAATCTTTCTCATCA	0.318000													3	45					0.014758	0.0154838	1	1	0
ZFP37	7539	broad.mit.edu	37	9	115805369	115805369	+	Missense_Mutation	SNP	G	G	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr9:115805369G>C	ENST00000374227.3	-	4	1556	c.1529C>G	c.(1528-1530)aCt>aGt	p.T510S	ZFP37_ENST00000555206.1_Missense_Mutation_p.T511S|ZFP37_ENST00000553380.1_Missense_Mutation_p.T525S			Q9Y6Q3	ZFP37_HUMAN	ZFP37 zinc finger protein	510						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|breast(3)|cervix(1)|endometrium(1)|kidney(3)|large_intestine(6)|lung(14)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(3)	38						ACCTGTATGAGTTCTCATATG	0.358000													40	50					0	0	1	0	0
KCNQ2	3785	broad.mit.edu	37	20	62070978	62070978	+	Silent	SNP	G	G	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr20:62070978G>A	ENST00000354587.3	-	6	1076	c.900C>T	c.(898-900)atC>atT	p.I300I	KCNQ2_ENST00000344462.3_Silent_p.I300I|KCNQ2_ENST00000344425.5_Silent_p.I300I|KCNQ2_ENST00000357249.2_Silent_p.I300I|KCNQ2_ENST00000370222.3_Silent_p.I300I|KCNQ2_ENST00000359125.2_Silent_p.I300I|KCNQ2_ENST00000359689.1_Silent_p.I300I|KCNQ2_ENST00000370226.1_Silent_p.I300I|KCNQ2_ENST00000360480.3_Silent_p.I300I|KCNQ2_ENST00000370221.1_Silent_p.I300I|KCNQ2_ENST00000430658.1_Silent_p.I300I|KCNQ2_ENST00000370224.1_Silent_p.I300I			O43526	KCNQ2_HUMAN	potassium voltage-gated channel, KQT-like subfamily, member 2	300					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			biliary_tract(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(4)|kidney(3)|large_intestine(4)|liver(1)|lung(30)|ovary(2)|prostate(4)|skin(3)|upper_aerodigestive_tract(1)	65	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	AGGAGACACCGATGAGGGTGA	0.642000													15	16					0	0	1	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117959898	117959898	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chrX:117959898C>T	ENST00000310164.2	+	4	1198	c.691C>T	c.(691-693)Cgt>Tgt	p.R231C		NM_173798.2	NP_776159.1	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	231					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(13)|ovary(1)|prostate(2)	22						TAAACGGAAGCGTCCAAAAAG	0.498000													4	15					0	0	1	0	0
WDR3	10885	broad.mit.edu	37	1	118476063	118476063	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr1:118476063G>A	ENST00000349139.4	+	2	168	c.121G>A	c.(121-123)Gta>Ata	p.V41I	WDR3_ENST00000369441.3_Intron|WDR3_ENST00000471680.1_3'UTR	NM_006784.2	NP_006775.1	Q9UNX4	WDR3_HUMAN	WD repeat domain 3	41						nuclear membrane|nucleolus				breast(2)|cervix(2)|endometrium(5)|kidney(4)|large_intestine(9)|liver(2)|lung(22)|prostate(2)|upper_aerodigestive_tract(1)	49	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		TTATGTGGCAGTACCAGCTTG	0.438000													4	96					0	0	1	0	0
NBPF20	100288142	broad.mit.edu	37	1	148344742	148344742	+	Splice_Site	SNP	T	T	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr1:148344742T>G	ENST00000369202.1	-	3	373	c.175_splice	c.e3-1	p.N59_splice	NBPF20_ENST00000414710.2_Splice_Site_p.N59_splice					neuroblastoma breakpoint family, member 20											breast(1)|cervix(2)|endometrium(6)|kidney(1)|large_intestine(5)|lung(10)|prostate(1)|urinary_tract(1)	27						CTCTTCATAGTCTGAGAAAAG	0.512000													6	240					0	0	1	0	0
RAB11FIP5	26056	broad.mit.edu	37	2	73316401	73316401	+	Silent	SNP	T	T	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr2:73316401T>C	ENST00000258098.6	-	2	714	c.474A>G	c.(472-474)gaA>gaG	p.E158E	RAB11FIP5_ENST00000493523.2_5'UTR	NM_015470.2	NP_056285.1	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	158					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding			biliary_tract(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(3)|lung(9)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	23						TCTCGCCGCGTTCCTTCTCCT	0.582000													36	229					0	0	1	0	0
THBS3	7059	broad.mit.edu	37	1	155173028	155173028	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr1:155173028C>T	ENST00000368378.3	-	6	762	c.742G>A	c.(742-744)Gat>Aat	p.D248N	THBS3_ENST00000541990.1_5'UTR|THBS3_ENST00000428962.2_Intron|RP11-263K19.4_ENST00000422665.1_RNA|RP11-263K19.4_ENST00000430312.1_RNA|THBS3_ENST00000487250.1_5'UTR|THBS3_ENST00000457183.2_Missense_Mutation_p.D128N|RP11-263K19.4_ENST00000453136.1_RNA	NM_001252607.1|NM_007112.4	NP_001239536.1|NP_009043.1	P49746	TSP3_HUMAN	thrombospondin 3	248					cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(6)|endometrium(4)|kidney(4)|large_intestine(6)|lung(14)|ovary(3)|prostate(2)|skin(2)|upper_aerodigestive_tract(4)|urinary_tract(3)	48	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TCTCGTATATCATCCCGCAGC	0.602000													21	21					0	0	1	0	0
FSTL4	23105	broad.mit.edu	37	5	132537700	132537700	+	Missense_Mutation	SNP	T	T	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr5:132537700T>C	ENST00000265342.7	-	15	2000	c.1751A>G	c.(1750-1752)cAc>cGc	p.H584R	CTB-49A3.2_ENST00000509051.1_RNA	NM_015082.1	NP_055897.1	Q6MZW2	FSTL4_HUMAN	follistatin-like 4	584						extracellular region	calcium ion binding			autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|endometrium(1)|kidney(3)|large_intestine(4)|lung(8)|skin(2)|upper_aerodigestive_tract(1)	23		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCGGATGAGGTGCTGGCTCTG	0.557000													8	83					0	0	1	0	0
ZNF619	285267	broad.mit.edu	37	3	40529533	40529533	+	Missense_Mutation	SNP	C	C	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr3:40529533C>G	ENST00000447116.2	+	6	1959	c.1652C>G	c.(1651-1653)tCt>tGt	p.S551C	ZNF619_ENST00000456778.1_Missense_Mutation_p.S467C|ZNF619_ENST00000314686.5_Missense_Mutation_p.S495C|ZNF619_ENST00000429348.2_Missense_Mutation_p.S511C|ZNF619_ENST00000432264.2_Missense_Mutation_p.S511C|ZNF619_ENST00000521353.1_Missense_Mutation_p.S551C|ZNF619_ENST00000520737.1_3'UTR|ZNF619_ENST00000522736.1_Missense_Mutation_p.S502C	NM_001145082.2	NP_001138554.1	E9PCD9	E9PCD9_HUMAN	zinc finger protein 619	551					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			breast(1)|cervix(1)|endometrium(2)|large_intestine(7)|lung(6)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)	21				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		CATACCTGCTCTGCCCTAGCC	0.547000													12	22					0	0	1	0	0
NR2F6	2063	broad.mit.edu	37	19	17343311	17343311	+	Silent	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr19:17343311C>T	ENST00000291442.3	-	4	1784	c.1065G>A	c.(1063-1065)ctG>ctA	p.L355L		NM_005234.3	NP_005225.2	P10588	NR2F6_HUMAN	nuclear receptor subfamily 2, group F, member 6	355	Important for dimerization (By similarity).|Ligand-binding (By similarity).				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding			endometrium(2)|kidney(1)|large_intestine(1)|lung(1)	5						CGGGGAGCCGCAGCAGCAGGC	0.677000													7	8					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50278598	50278598	+	Missense_Mutation	SNP	A	A	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr18:50278598A>C	ENST00000442544.2	+	2	882	c.266A>C	c.(265-267)aAg>aCg	p.K89T	DCC_ENST00000412726.1_5'UTR	NM_005215.3	NP_005206.2	P43146	DCC_HUMAN	deleted in colorectal carcinoma	89	Ig-like C2-type 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				NS(3)|breast(2)|central_nervous_system(1)|cervix(2)|endometrium(13)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(23)|liver(1)|lung(56)|ovary(7)|pancreas(3)|prostate(2)|skin(16)|stomach(2)|upper_aerodigestive_tract(4)|urinary_tract(6)	148		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GATGAAAGGAAGCAGCAACTT	0.483000													5	42					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	117977676	117977676	+	Missense_Mutation	SNP	G	G	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr12:117977676G>C	ENST00000425217.1	-	10	1502	c.1448C>G	c.(1447-1449)cCt>cGt	p.P483R	KSR2_ENST00000339824.5_Missense_Mutation_p.P512R|KSR2_ENST00000302438.5_Missense_Mutation_p.P209R|KSR2_ENST00000545002.1_5'UTR	NM_173598.4	NP_775869.3	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	512					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			NS(1)|breast(3)|central_nervous_system(2)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(12)|lung(25)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	67	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGGCTGGTAAGGGACAGGGAT	0.637000													22	20					0	0	1	0	0
TRBV6-8	0	broad.mit.edu	37	7	142124530	142124530	+	RNA	SNP	A	A	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr7:142124530A>G	ENST00000390376.2	-	0	35																											CCCACAGGAGAGAAAAGGCCG	0.597000													4	134					0	0	1	0	0
SEMA4G	57715	broad.mit.edu	37	10	102732996	102732996	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr10:102732996C>T	ENST00000210633.3	+	2	313	c.235C>T	c.(235-237)Ctc>Ttc	p.L79F	SEMA4G_ENST00000519756.1_3'UTR|SEMA4G_ENST00000517724.1_Missense_Mutation_p.L79F|SEMA4G_ENST00000370250.4_Missense_Mutation_p.L79F			Q9NTN9	SEM4G_HUMAN	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	79	Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(3)|cervix(1)|endometrium(2)|kidney(1)|large_intestine(9)|lung(5)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	25		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		CCTGTTCTCTCTCAGTGCCAA	0.607000													6	15					0	0	1	0	0
MSX2	4488	broad.mit.edu	37	5	174156222	174156222	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr5:174156222C>T	ENST00000239243.6	+	2	567	c.440C>T	c.(439-441)aCg>aTg	p.T147M	MSX2_ENST00000507785.1_3'UTR	NM_002449.4	NP_002440.2	P35548	MSX2_HUMAN	msh homeobox 2	147					cranial suture morphogenesis|negative regulation of transcription, DNA-dependent|osteoblast differentiation	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			breast(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(2)|prostate(1)	10	Renal(175;0.000159)|Lung NSC(126;0.0196)|all_lung(126;0.0303)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)			AAGCCGCGCACGCCCTTTACC	0.542000													8	12					0	0	1	0	0
SLC30A10	55532	broad.mit.edu	37	1	220091654	220091654	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr1:220091654C>T	ENST00000366926.3	-	3	1062	c.901G>A	c.(901-903)Gag>Aag	p.E301K	SLC30A10_ENST00000484079.1_5'UTR|SLC30A10_ENST00000536446.1_Missense_Mutation_p.E56K	NM_018713.2	NP_061183.2	Q6XR72	ZNT10_HUMAN	solute carrier family 30, member 10	301					zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity			NS(1)|endometrium(1)|large_intestine(1)|lung(9)|skin(1)	13				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		GCAGCGGTCTCCTTGATAAGC	0.468000													4	75					0	0	1	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111976095	111976095	+	Missense_Mutation	SNP	A	A	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr9:111976095A>G	ENST00000374566.3	-	17	2154	c.1637T>C	c.(1636-1638)cTg>cCg	p.L546P		NM_019114.3	NP_061987.3	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	546						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			NS(2)|breast(1)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(6)|lung(14)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	39						TCCTGGACTCAGTTCTACAAA	0.527000													11	31					0	0	1	0	0
AMZ2P1	0	broad.mit.edu	37	17	62968690	62968690	+	RNA	SNP	A	A	G	rs138671696	by1000genomes	TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr17:62968690A>G	ENST00000430983.1	-	0	1554					NR_026903.1																						AAAATTCCACAAGTCTCTTGG	0.373000													5	76					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92600067	92600067	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr11:92600067G>A	ENST00000298047.6	+	21	11836	c.11819G>A	c.(11818-11820)cGg>cAg	p.R3940Q	FAT3_ENST00000525166.1_Missense_Mutation_p.R3790Q|FAT3_ENST00000409404.2_Missense_Mutation_p.R3940Q|FAT3_ENST00000533797.1_Missense_Mutation_p.R275Q			Q8TDW7	FAT3_HUMAN	FAT atypical cadherin 3	3940	Laminin G-like.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(2)|endometrium(10)|kidney(4)|large_intestine(11)|liver(2)|lung(37)|ovary(5)|pancreas(1)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(5)	85		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TACGTGGAGCGGCGCCGGGCG	0.622000										TCGA Ovarian(4;0.039)			3	23					0	0	1	0	0
SEMA3F	6405	broad.mit.edu	37	3	50214257	50214257	+	Silent	SNP	G	G	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr3:50214257G>A	ENST00000002829.3	+	7	1090	c.606G>A	c.(604-606)ccG>ccA	p.P202P	SEMA3F_ENST00000434342.1_Silent_p.P171P|SEMA3F_ENST00000413852.1_Silent_p.P103P	NM_004186.3	NP_004177.3	Q13275	SEM3F_HUMAN	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	202	Sema.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			central_nervous_system(1)|kidney(1)|large_intestine(2)|lung(9)|ovary(1)|prostate(1)|skin(2)	17				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		GCAAGTGTCCGTACGATCCCA	0.617000													3	37					0	0	1	0	0
FANCB	2187	broad.mit.edu	37	X	14861809	14861809	+	Missense_Mutation	SNP	C	C	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chrX:14861809C>A	ENST00000398334.1	-	10	2727	c.2460G>T	c.(2458-2460)aaG>aaT	p.K820N	FANCB_ENST00000324138.3_Missense_Mutation_p.K820N	NM_001018113.1	NP_001018123.1	Q8NB91	FANCB_HUMAN	Fanconi anemia, complementation group B	820					DNA repair	nucleoplasm				NS(1)|autonomic_ganglia(1)|breast(1)|endometrium(3)|kidney(2)|large_intestine(5)|lung(9)|skin(1)|upper_aerodigestive_tract(1)	24	Hepatocellular(33;0.183)					ACATTTTCTTCTTTTCTCTCT	0.418000								Involved in tolerance or repair of DNA crosslinks	Fanconi Anemia				10	54					0.000673444	0.00071834	1	1	0
GRIA2	2891	broad.mit.edu	37	4	158255214	158255214	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr4:158255214C>T	ENST00000296526.7	+	9	1533	c.1208C>T	c.(1207-1209)cCt>cTt	p.P403L	GRIA2_ENST00000507898.1_Missense_Mutation_p.P356L|GRIA2_ENST00000449365.1_Missense_Mutation_p.P356L|GRIA2_ENST00000264426.9_Missense_Mutation_p.P403L|GRIA2_ENST00000393815.2_Missense_Mutation_p.P356L	NM_000826.3	NP_000817.2	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2	403					synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			NS(1)|breast(2)|central_nervous_system(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(16)|liver(2)|lung(32)|ovary(3)|prostate(3)|skin(5)|upper_aerodigestive_tract(3)|urinary_tract(1)	79	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	ACTGAGCTCCCTTCTGGAAAT	0.393000													9	106					0	0	1	0	0
VPS54	51542	broad.mit.edu	37	2	64211107	64211107	+	Silent	SNP	T	T	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr2:64211107T>G	ENST00000272322.4	-	2	181	c.27A>C	c.(25-27)ccA>ccC	p.P9P	VPS54_ENST00000409558.3_Silent_p.P9P	NM_016516.2	NP_057600.2	Q9P1Q0	VPS54_HUMAN	vacuolar protein sorting 54 homolog (S. cerevisiae)	9					protein transport|retrograde transport, endosome to Golgi					endometrium(3)|kidney(4)|large_intestine(8)|lung(10)|ovary(1)|upper_aerodigestive_tract(1)	27						CTTGAGGCACTGGTGAAGAAC	0.413000													35	77					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11058353	11058353	+	RNA	SNP	T	T	C	rs79433933	by1000genomes	TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr21:11058353T>C	ENST00000470054.1	-	0	324									B melanoma antigen family, member 2															Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GAAATCTCTTTATAAAACCTT	0.343000													4	86					0	0	1	0	0
MVK	4598	broad.mit.edu	37	12	110019342	110019342	+	Missense_Mutation	SNP	G	G	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr12:110019342G>C	ENST00000228510.3	+	5	590	c.514G>C	c.(514-516)Gat>Cat	p.D172H	MVK_ENST00000392727.3_Intron|MVK_ENST00000539696.1_Intron|MVK_ENST00000535044.1_Intron|MVK_ENST00000541384.1_Intron|MVK_ENST00000539575.1_Intron	NM_000431.2|NM_001114185.1	NP_000422.1|NP_001107657.1	Q03426	KIME_HUMAN	mevalonate kinase	172					cholesterol biosynthetic process|isoprenoid biosynthetic process	cytosol|peroxisome	ATP binding|identical protein binding|mevalonate kinase activity			endometrium(1)|kidney(1)|large_intestine(1)|lung(3)|prostate(1)|skin(1)	8						GAAGGACGGGGATTGCGTCAA	0.652000													7	15					0	0	1	0	0
CARS	833	broad.mit.edu	37	11	3039171	3039171	+	Missense_Mutation	SNP	T	T	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr11:3039171T>C	ENST00000397114.3	-	15	1740	c.1364A>G	c.(1363-1365)aAt>aGt	p.N455S	CARS_ENST00000380525.4_Missense_Mutation_p.N548S|CARS_ENST00000278224.9_Missense_Mutation_p.N465S|CARS_ENST00000401769.3_Missense_Mutation_p.N478S|CARS_ENST00000397111.5_Missense_Mutation_p.N465S			P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase	465					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|tRNA binding		CARS/ALK(5)	central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|lung(14)|ovary(3)|skin(1)	31		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	ATCTTTCACATTTAAGAAAAA	0.378000			T	ALK	ALCL								26	32					0	0	1	0	0
CDH12	1010	broad.mit.edu	37	5	21842308	21842308	+	Missense_Mutation	SNP	A	A	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr5:21842308A>T	ENST00000382254.1	-	8	1862	c.776T>A	c.(775-777)cTc>cAc	p.L259H	CDH12_ENST00000504376.2_Missense_Mutation_p.L259H|CDH12_ENST00000522262.1_Missense_Mutation_p.L219H|CDH12_ENST00000521384.1_5'UTR	NM_004061.3	NP_004052.2	P55289	CAD12_HUMAN	cadherin 12, type 2 (N-cadherin 2)	259	Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(2)|breast(2)|cervix(1)|endometrium(6)|kidney(4)|large_intestine(19)|lung(75)|ovary(2)|prostate(3)|skin(2)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	120						GACATCGGTGAGAGTGATGTT	0.403000										HNSCC(59;0.17)			6	71					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70866774	70866774	+	Missense_Mutation	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr16:70866774C>T	ENST00000393567.2	-	80	14026	c.13876G>A	c.(13876-13878)Gtg>Atg	p.V4626M		NM_001270974.1	NP_001257903.1	Q4G0P3	HYDIN_HUMAN	HYDIN, axonemal central pair apparatus protein	4626										breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(17)|lung(12)|ovary(2)|skin(3)|stomach(2)|upper_aerodigestive_tract(1)	43		Ovarian(137;0.0654)				GGTGGTCCCACGCAGACTCCA	0.572000													9	24					0	0	1	0	0
KIAA0391	9692	broad.mit.edu	37	14	35592592	35592592	+	Silent	SNP	T	T	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr14:35592592T>C	ENST00000557565.1	+	2	522	c.141T>C	c.(139-141)tcT>tcC	p.S47S	KIAA0391_ENST00000605870.1_Intron|KIAA0391_ENST00000604948.1_Intron|KIAA0391_ENST00000603544.1_Silent_p.S47S|KIAA0391_ENST00000603588.1_Intron|KIAA0391_ENST00000534898.4_Silent_p.S47S|KIAA0391_ENST00000321130.10_Silent_p.S47S|KIAA0391_ENST00000250377.7_5'UTR			O15091	MRRP3_HUMAN	KIAA0391	47					tRNA processing	mitochondrion				central_nervous_system(1)|endometrium(4)|large_intestine(2)|lung(5)|skin(1)|upper_aerodigestive_tract(1)	14	Breast(36;0.0545)|Hepatocellular(127;0.158)|Prostate(35;0.184)		Lung(238;2.93e-05)|LUAD - Lung adenocarcinoma(48;3.86e-05)|Epithelial(34;0.0114)|all cancers(34;0.0277)	GBM - Glioblastoma multiforme(112;0.0593)		GGTTGTTTTCTCTTAAAACAA	0.473000													4	40					0	0	1	0	0
LCMT2	9836	broad.mit.edu	37	15	43621659	43621659	+	Silent	SNP	G	G	C			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr15:43621659G>C	ENST00000305641.5	-	1	1144	c.1029C>G	c.(1027-1029)gcC>gcG	p.A343A	LCMT2_ENST00000567039.1_3'UTR|LCMT2_ENST00000544735.1_5'UTR	NM_014793.4	NP_055608.2	O60294	LCMT2_HUMAN	leucine carboxyl methyltransferase 2	343					tRNA processing		methyltransferase activity|protein binding			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(2)|liver(1)|lung(9)|skin(1)|urinary_tract(1)	20		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.1e-07)	L-Leucine(DB00149)	TGACTACGCTGGCAGGGAATA	0.552000													9	21					0	0	1	0	0
ANKRD36C	400986	broad.mit.edu	37	2	96593000	96593000	+	Missense_Mutation	SNP	A	A	G	rs111976783		TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr2:96593000A>G	ENST00000456556.1	-	28	1985	c.1901T>C	c.(1900-1902)aTa>aCa	p.I634T						ankyrin repeat domain 36C									p.I634T(1)		breast(1)|endometrium(8)|kidney(5)|lung(4)	18						TTCTGTGGCTATATTTGAAAC	0.338000													3	47					0	0	1	0	0
THBS3	7059	broad.mit.edu	37	1	155169845	155169845	+	Missense_Mutation	SNP	C	C	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr1:155169845C>G	ENST00000368378.3	-	15	1788	c.1768G>C	c.(1768-1770)Gat>Cat	p.D590H	THBS3_ENST00000541990.1_Missense_Mutation_p.D119H|THBS3_ENST00000541576.1_5'UTR|THBS3_ENST00000428962.2_Silent_p.G386G|RP11-263K19.4_ENST00000447623.1_RNA|RP11-263K19.4_ENST00000436772.1_RNA|THBS3_ENST00000487250.1_5'UTR|THBS3_ENST00000457183.2_Missense_Mutation_p.D470H|RP11-263K19.4_ENST00000453136.1_RNA|RP11-263K19.4_ENST00000454348.1_RNA	NM_001252607.1|NM_007112.4	NP_001239536.1|NP_009043.1	P49746	TSP3_HUMAN	thrombospondin 3	590					cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(6)|endometrium(4)|kidney(4)|large_intestine(6)|lung(14)|ovary(3)|prostate(2)|skin(2)|upper_aerodigestive_tract(4)|urinary_tract(3)	48	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CCGTCCTCATCCCTGTCTGTC	0.532000													27	39					0	0	1	0	0
USP7	7874	broad.mit.edu	37	16	8989539	8989539	+	Missense_Mutation	SNP	T	T	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr16:8989539T>G	ENST00000344836.4	-	27	3077	c.2879A>C	c.(2878-2880)gAa>gCa	p.E960A	USP7_ENST00000381886.4_Missense_Mutation_p.E944A|USP7_ENST00000535863.1_Missense_Mutation_p.E861A	NM_003470.2	NP_003461.2	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7 (herpes virus-associated)	960					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|endometrium(2)|kidney(3)|large_intestine(13)|lung(20)|ovary(3)|skin(2)|upper_aerodigestive_tract(1)	48						AGATAAACATTCTAATAGTTC	0.408000													4	35					0	0	1	0	0
PLEKHM1P	0	broad.mit.edu	37	17	62818381	62818381	+	RNA	SNP	C	C	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr17:62818381C>T	ENST00000582986.1	-	0	318					NR_024386.1																						CGCAAGCGGGCCTGCTCCTGC	0.627000													6	11					0	0	1	0	0
ZNF23	7571	broad.mit.edu	37	16	71482059	71482059	+	Missense_Mutation	SNP	T	T	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr16:71482059T>A	ENST00000393539.2	-	6	2682	c.1869A>T	c.(1867-1869)aaA>aaT	p.K623N	RP11-510M2.10_ENST00000576258.1_RNA|ZNF23_ENST00000539742.1_5'UTR|ZNF23_ENST00000497160.1_3'UTR|ZNF23_ENST00000417828.1_Missense_Mutation_p.K623N|AC010547.9_ENST00000561908.1_3'UTR|ZNF23_ENST00000428724.2_Missense_Mutation_p.K565N|ZNF23_ENST00000564528.1_Missense_Mutation_p.K565N|ZNF23_ENST00000358700.2_3'UTR|ZNF23_ENST00000357254.4_Missense_Mutation_p.K623N	NM_145911.1	NP_666016.1	P17027	ZNF23_HUMAN	zinc finger protein 23	623					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(1)|central_nervous_system(2)|endometrium(2)|kidney(1)|large_intestine(7)|lung(14)|stomach(1)|urinary_tract(1)	29		Ovarian(137;0.00768)		BRCA - Breast invasive adenocarcinoma(221;0.0686)		ACCTGAATGCTTTCCCACACA	0.403000													5	113					0	0	1	0	0
UBC	7316	broad.mit.edu	37	12	125397652	125397652	+	Silent	SNP	T	T	C	rs146795524		TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr12:125397652T>C	ENST00000536769.1	-	1	2242	c.666A>G	c.(664-666)gtA>gtG	p.V222V	UBC_ENST00000546120.1_Silent_p.V146V|UBC_ENST00000538617.1_Intron|UBC_ENST00000339647.5_Silent_p.V222V			P0CG48	UBC_HUMAN	ubiquitin C	222	Ubiquitin-like 3.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			breast(3)|endometrium(4)|kidney(4)|large_intestine(2)|lung(13)|ovary(3)|prostate(4)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	36	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.17e-05)|Epithelial(86;0.000207)|all cancers(50;0.00308)		TGAGACGGAGTACCAGGTGCA	0.512000													4	149					0	0	1	0	0
LRRC4B	94030	broad.mit.edu	37	19	51021545	51021545	+	Silent	SNP	A	A	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr19:51021545A>G	ENST00000599957.1	-	3	1622	c.1425T>C	c.(1423-1425)ggT>ggC	p.G475G	LRRC4B_ENST00000389201.3_Silent_p.G475G			Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B	475	Gly-rich.					cell junction|integral to membrane|presynaptic membrane				breast(1)|central_nervous_system(1)|endometrium(4)|large_intestine(6)|liver(1)|lung(11)|prostate(4)|skin(1)|urinary_tract(1)	30		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		ctccaacaccaccactgcccc	0.751000													3	8					0	0	1	0	0
FMO1	2326	broad.mit.edu	37	1	171251205	171251205	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr1:171251205G>A	ENST00000354841.4	+	6	1047	c.916G>A	c.(916-918)Gta>Ata	p.V306I	FMO1_ENST00000402921.2_Missense_Mutation_p.V243I|FMO1_ENST00000367750.3_Missense_Mutation_p.V306I|FMO1_ENST00000469112.1_3'UTR			Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	306					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			NS(1)|breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(4)|lung(13)|prostate(2)|skin(2)	27	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CATAAAAGAGGTAAAGGAAAA	0.408000													13	78					0	0	1	0	0
KCNT2	343450	broad.mit.edu	37	1	196254839	196254839	+	Missense_Mutation	SNP	A	A	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr1:196254839A>G	ENST00000367433.5	-	22	2674	c.2573T>C	c.(2572-2574)tTt>tCt	p.F858S	KCNT2_ENST00000367431.4_Missense_Mutation_p.F808S|KCNT2_ENST00000294725.8_Missense_Mutation_p.F882S|KCNT2_ENST00000498426.1_5'UTR|KCNT2_ENST00000451324.2_3'UTR			Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	882						voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			NS(1)|breast(4)|endometrium(5)|haematopoietic_and_lymphoid_tissue(4)|kidney(3)|large_intestine(16)|lung(43)|ovary(5)|pancreas(1)|prostate(1)|skin(11)|stomach(2)|upper_aerodigestive_tract(1)	97						CCCAGCAGCAAAAGGCAGTCG	0.373000													5	17					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18025164	18025164	+	Missense_Mutation	SNP	C	C	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr17:18025164C>A	ENST00000205890.5	+	2	3388	c.3050C>A	c.(3049-3051)aCc>aAc	p.T1017N		NM_016239.3	NP_057323.3	Q9UKN7	MYO15_HUMAN	myosin XVA	1017	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			breast(5)|central_nervous_system(2)|endometrium(17)|kidney(3)|large_intestine(16)|lung(27)|ovary(3)|pancreas(1)|prostate(6)|skin(13)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(2)	99	all_neural(463;0.228)					GAAGAGGCCACCCTGGGGGAC	0.622000													3	43					0.115264	0.117094	1	1	0
UNC13C	440279	broad.mit.edu	37	15	54586209	54586209	+	Missense_Mutation	SNP	C	C	G			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr15:54586209C>G	ENST00000545554.1	+	10	3935	c.3935C>G	c.(3934-3936)aCa>aGa	p.T1312R	UNC13C_ENST00000260323.11_Missense_Mutation_p.T1312R|UNC13C_ENST00000537900.1_Missense_Mutation_p.T1310R			Q8NB66	UN13C_HUMAN	unc-13 homolog C (C. elegans)	1312	C2 1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			breast(3)|endometrium(5)|kidney(5)|large_intestine(20)|lung(70)|ovary(6)|pancreas(2)|prostate(2)|upper_aerodigestive_tract(4)|urinary_tract(4)	121				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTGGGACAAACAATTGTAGAA	0.353000													4	82					0	0	1	0	0
DLEC1	9940	broad.mit.edu	37	3	38101265	38101265	+	Missense_Mutation	SNP	G	G	A			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr3:38101265G>A	ENST00000308059.6	+	3	616	c.595G>A	c.(595-597)Gag>Aag	p.E199K	DLEC1_ENST00000452631.2_Missense_Mutation_p.E199K|DLEC1_ENST00000346219.3_Missense_Mutation_p.E199K			Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1	199					negative regulation of cell proliferation	cytoplasm				NS(1)|breast(3)|central_nervous_system(3)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(9)|lung(14)|ovary(3)|pancreas(3)|prostate(1)|skin(5)|upper_aerodigestive_tract(2)	51				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		TATAGACAGCGAGTTGCTACG	0.468000													8	191					0	0	1	0	0
RP11-180I4.2	0	broad.mit.edu	37	9	98468147	98468148	+	RNA	INS	-	-	CAC	rs117111638	by1000genomes	TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr9:98468147_98468148insCAC	ENST00000580326.1	+	0	189																											acaatcaccatcaccaccacca	0.574													4	2	---	---	---	---					
TRAV9-2	0	broad.mit.edu	37	14	22409540	22409540	+	RNA	DEL	T	T	-			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr14:22409540delT	ENST00000390441.2	+	0	102																											tctctctctctTTTTTTTTTT	0.428													2	4	---	---	---	---					
GPATCH8	23131	broad.mit.edu	37	17	42476814	42476815	+	Frame_Shift_Ins	INS	-	-	T			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr17:42476814_42476815insT	ENST00000434000.1	-	9	2678_2679	c.2396_2397insA	c.(2395-2397)ttcfs	p.F799fs	GPATCH8_ENST00000591680.1_Frame_Shift_Ins_p.F877fs			Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	877						intracellular	nucleic acid binding|zinc ion binding			breast(4)|endometrium(7)|kidney(6)|large_intestine(4)|liver(2)|lung(21)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	50		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		TCTGGTCTGAAGAGGCATCTGA	0.554													22	39	---	---	---	---					
CTD-2377D24.8	0	broad.mit.edu	37	17	46768842	46768842	+	RNA	DEL	T	T	-			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr17:46768842delT	ENST00000575202.1	+	0	51																											ACTACAAATATTCTGAACGGC	0.458													9	12	---	---	---	---					
ZNF512B	57473	broad.mit.edu	37	20	62593996	62593996	+	Frame_Shift_Del	DEL	C	C	-			TCGA-J4-AATZ-01A-11D-A41K-08	TCGA-J4-AATZ-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	65e172e5-0c3a-46a6-9a66-78f0c77d8f7f	5d6e5f5b-51e4-47f3-835d-ea897c775d3a	g.chr20:62593996delC	ENST00000450537.1	-	13	2167	c.2107delG	c.(2107-2109)ccfs	p.A703fs	ZNF512B_ENST00000369888.1_Frame_Shift_Del_p.A703fs|ZNF512B_ENST00000217130.3_Frame_Shift_Del_p.A703fs			Q96KM6	Z512B_HUMAN	zinc finger protein 512B	703					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(1)|cervix(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(3)|lung(16)|ovary(1)|prostate(4)|skin(1)	33	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					CAGTCGCGGGCCAGCTCGTCC	0.716													2	4	---	---	---	---					
