Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FSIP2	401024	broad.mit.edu	37	2	186671327	186671327	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr2:186671327C>T	ENST00000343098.5	+	17	17561	c.17561C>T	c.(17560-17562)cCc>cTc	p.P5854L	FSIP2_ENST00000424728.1_Missense_Mutation_p.P5765L	NM_173651.2	NP_775922.2			fibrous sheath interacting protein 2											NS(1)|autonomic_ganglia(1)|breast(2)|endometrium(4)|kidney(1)|large_intestine(11)|lung(46)|pancreas(1)|urinary_tract(2)	69						AAAAGTGAACCCAGTAAACCA	0.343000													3	62					0	0	1	0	0
AGAP10	728127	broad.mit.edu	37	10	47207813	47207813	+	Splice_Site	SNP	T	T	C			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr10:47207813T>C	ENST00000355232.3	-	5	3482	c.471_splice	c.e5+1	p.H157_splice	AGAP10_ENST00000413193.2_Splice_Site_p.H228_splice|AGAP10_ENST00000452145.2_Splice_Site_p.H132_splice|RP11-144G6.12_ENST00000605970.1_RNA					ArfGAP with GTPase domain, ankyrin repeat and PH domain 10									p.H228R(20)		endometrium(5)|kidney(3)|lung(1)|prostate(2)|urinary_tract(1)	12						TTTACTTACATGGTTTGTACA	0.294000													6	30					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	A	G	rs146714035	by1000genomes	TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr1:145367739A>G	ENST00000342960.5	+	83	10370	c.10335A>G	c.(10333-10335)aaA>aaG	p.K3445K	NBPF10_ENST00000369338.1_Intron|NBPF10_ENST00000369339.2_Intron	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	3445								p.K3445K(4)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.413000													5	115					0	0	1	0	0
MANEAL	149175	broad.mit.edu	37	1	38261411	38261411	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr1:38261411G>A	ENST00000373045.6	+	2	934	c.553G>A	c.(553-555)Gtc>Atc	p.V185I	MANEAL_ENST00000397631.3_Missense_Mutation_p.V185I|MANEAL_ENST00000329006.5_5'UTR|MANEAL_ENST00000525897.1_5'UTR	NM_001113482.1	NP_001106954.1	Q5VSG8	MANEL_HUMAN	mannosidase, endo-alpha-like	185						Golgi membrane|integral to membrane	hydrolase activity			endometrium(1)|large_intestine(1)|liver(1)|lung(1)|prostate(3)	7	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CGTCTCAGGCGTCCTGGTCCT	0.542000													17	64					0	0	1	0	0
FAM13C	220965	broad.mit.edu	37	10	61011334	61011334	+	Splice_Site	SNP	C	C	T			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr10:61011334C>T	ENST00000373867.3	-	14	1848		c.e14+1		FAM13C_ENST00000442566.3_Splice_Site|FAM13C_ENST00000277705.6_Splice_Site|FAM13C_ENST00000419214.2_Splice_Site|FAM13C_ENST00000373868.2_Splice_Site|FAM13C_ENST00000435852.2_Silent_p.R545R|FAM13C_ENST00000468840.2_Splice_Site	NM_001166698.1	NP_001160170.1	Q8NE31	FA13C_HUMAN	family with sequence similarity 13, member C											NS(1)|breast(2)|endometrium(3)|kidney(2)|large_intestine(8)|lung(19)|ovary(2)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	45						CCGACACATACCTTCCTGTTT	0.378000													6	149					0	0	1	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54914981	54914981	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr12:54914981G>A	ENST00000293373.6	+	18	1916	c.1837G>A	c.(1837-1839)Gtc>Atc	p.V613I	NCKAP1L_ENST00000545638.2_Missense_Mutation_p.V563I	NM_005337.4	NP_005328.2	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	613					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			NS(3)|breast(2)|central_nervous_system(2)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(12)|lung(37)|ovary(3)|prostate(3)|skin(3)|stomach(2)	80						CAGCAATTGCGTCCTGGAGAT	0.567000													3	48					0	0	1	0	0
AKAP12	9590	broad.mit.edu	37	6	151671704	151671704	+	Silent	SNP	C	C	T			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr6:151671704C>T	ENST00000402676.2	+	4	2418	c.2178C>T	c.(2176-2178)gaC>gaT	p.D726D	AKAP12_ENST00000253332.1_Silent_p.D726D|AKAP12_ENST00000354675.6_Silent_p.D628D|AKAP12_ENST00000359755.5_Silent_p.D621D	NM_005100.3	NP_005091.2	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12	726					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			breast(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(22)|lung(22)|ovary(2)|pancreas(1)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	68		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		CGGGGACAGACGGGATCCTTG	0.587000													19	90					0	0	1	0	0
KDM6A	7403	broad.mit.edu	37	X	44938585	44938585	+	Nonsense_Mutation	SNP	G	G	T			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chrX:44938585G>T	ENST00000377967.4	+	20	3174	c.3133G>T	c.(3133-3135)Gaa>Taa	p.E1045*	KDM6A_ENST00000536777.1_Nonsense_Mutation_p.E1000*|KDM6A_ENST00000543216.1_Nonsense_Mutation_p.E966*|KDM6A_ENST00000382899.4_Nonsense_Mutation_p.E1052*	NM_021140.2	NP_066963.2	O15550	KDM6A_HUMAN	lysine (K)-specific demethylase 6A	1045					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	p.0?(6)		NS(1)|breast(7)|central_nervous_system(27)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(24)|kidney(24)|large_intestine(9)|liver(1)|lung(21)|oesophagus(11)|pancreas(2)|prostate(5)|skin(1)|soft_tissue(1)|urinary_tract(29)	170						CTCATTCCAGGAATCATTGAG	0.338000			"""D, N, F, S"""		"""renal, oesophageal SCC, MM"""								10	17					9.70103e-10	1.10391e-09	1	1	0
NCOA4	8031	broad.mit.edu	37	10	51584701	51584701	+	Nonsense_Mutation	SNP	C	C	G			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr10:51584701C>G	ENST00000452682.1	+	9	1100	c.848C>G	c.(847-849)tCa>tGa	p.S283*	NCOA4_ENST00000374082.1_Nonsense_Mutation_p.S267*|NCOA4_ENST00000443446.1_Nonsense_Mutation_p.S267*|NCOA4_ENST00000498586.1_3'UTR|NCOA4_ENST00000344348.6_Nonsense_Mutation_p.S267*|NCOA4_ENST00000374087.4_Nonsense_Mutation_p.S267*|NCOA4_ENST00000414907.2_Nonsense_Mutation_p.S101*|NCOA4_ENST00000430396.2_Nonsense_Mutation_p.S167*|NCOA4_ENST00000438493.1_Nonsense_Mutation_p.S283*	NM_001145260.1	NP_001138732.1	Q13772	NCOA4_HUMAN	nuclear receptor coactivator 4	267					androgen receptor signaling pathway|male gonad development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	androgen receptor binding|transcription coactivator activity			NS(1)|central_nervous_system(1)|kidney(1)|large_intestine(1)|skin(1)	5						AGTGAAAAATCAAGTTATCAA	0.403000			T	RET	papillary thyroid								13	119					0	0	1	0	0
RIC3	79608	broad.mit.edu	37	11	8159870	8159870	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr11:8159870C>T	ENST00000343202.4	-	3	441	c.376G>A	c.(376-378)Gag>Aag	p.E126K	RIC3_ENST00000309737.6_Missense_Mutation_p.E126K|RIC3_ENST00000335425.7_Intron|RIC3_ENST00000530060.1_5'UTR|RIC3_ENST00000539720.1_Missense_Mutation_p.E77K|RIC3_ENST00000425599.2_Missense_Mutation_p.E126K	NM_001206671.2|NM_024557.4	NP_001193600.1|NP_078833.3	Q7Z5B4	RIC3_HUMAN	RIC3 acetylcholine receptor chaperone	126						endoplasmic reticulum membrane|Golgi membrane|integral to membrane				breast(1)|endometrium(2)|large_intestine(2)|lung(9)|ovary(2)|pancreas(1)	17				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		TTCCCATCCTCTGCAGTTGTT	0.438000													38	159					0	0	1	0	0
DAAM1	23002	broad.mit.edu	37	14	59730213	59730213	+	Missense_Mutation	SNP	A	A	C			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr14:59730213A>C	ENST00000395125.1	+	1	41	c.18A>C	c.(16-18)agA>agC	p.R6S	DAAM1_ENST00000556135.1_Missense_Mutation_p.R6S|DAAM1_ENST00000351081.1_Missense_Mutation_p.R6S|DAAM1_ENST00000360909.3_Missense_Mutation_p.R6S	NM_014992.2	NP_055807.1	Q9Y4D1	DAAM1_HUMAN	dishevelled associated activator of morphogenesis 1	6					actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			breast(3)|cervix(3)|endometrium(5)|kidney(5)|large_intestine(4)|lung(7)|ovary(2)|prostate(1)|skin(2)|upper_aerodigestive_tract(4)|urinary_tract(1)	37				OV - Ovarian serous cystadenocarcinoma(108;0.165)		CAAGAAAGAGAGGTGGACGAG	0.413000													9	36					0	0	1	0	0
NCOA4	8031	broad.mit.edu	37	10	51584630	51584630	+	Silent	SNP	C	C	G			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr10:51584630C>G	ENST00000452682.1	+	9	1029	c.777C>G	c.(775-777)gcC>gcG	p.A259A	NCOA4_ENST00000374082.1_Silent_p.A243A|NCOA4_ENST00000443446.1_Silent_p.A243A|NCOA4_ENST00000498586.1_3'UTR|NCOA4_ENST00000344348.6_Silent_p.A243A|NCOA4_ENST00000374087.4_Silent_p.A243A|NCOA4_ENST00000414907.2_Silent_p.A77A|NCOA4_ENST00000430396.2_Silent_p.A143A|NCOA4_ENST00000438493.1_Silent_p.A259A	NM_001145260.1	NP_001138732.1	Q13772	NCOA4_HUMAN	nuclear receptor coactivator 4	243					androgen receptor signaling pathway|male gonad development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	androgen receptor binding|transcription coactivator activity			NS(1)|central_nervous_system(1)|kidney(1)|large_intestine(1)|skin(1)	5						CTTCCAGAGCCTGCAATTTCT	0.383000			T	RET	papillary thyroid								9	92					0	0	1	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067087	18067087	+	Missense_Mutation	SNP	T	T	C			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr7:18067087T>C	ENST00000506618.2	-	1	399	c.319A>G	c.(319-321)Atc>Gtc	p.I107V		NM_175886.2	NP_787082.1	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like 1	107					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			endometrium(1)|kidney(1)|large_intestine(3)|lung(9)|ovary(1)|prostate(3)	18	Lung NSC(10;0.0385)|all_lung(11;0.0736)					TTGGCAGAGATTGGGGACCGG	0.463000													4	118					0	0	1	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64722774	64722774	+	Silent	SNP	G	G	A			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chrX:64722774G>A	ENST00000338957.4	+	5	2263	c.2196G>A	c.(2194-2196)ccG>ccA	p.P732P	ZC3H12B_ENST00000423889.3_Silent_p.P721P	NM_001010888.3	NP_001010888.3	Q5HYM0	ZC12B_HUMAN	zinc finger CCCH-type containing 12B	721							endonuclease activity|nucleic acid binding|zinc ion binding			breast(2)|endometrium(4)|kidney(2)|large_intestine(4)|lung(13)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	29						GCTGGGACCCGCTGCCCTGTA	0.577000													3	22					0	0	1	0	0
LL22NC03-80A10.6	0	broad.mit.edu	37	22	22661362	22661362	+	RNA	SNP	C	C	T			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr22:22661362C>T	ENST00000426066.1	+	0	360					NR_027293.1																						TGGGCAACAGCGAGGGAAATG	0.502000													3	37					0	0	1	0	0
FRG1B	0	broad.mit.edu	37	20	29628283	29628283	+	Silent	SNP	G	G	C			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr20:29628283G>C	ENST00000278882.3	+	6	665	c.285G>C	c.(283-285)ggG>ggC	p.G95G	FRG1B_ENST00000439954.2_Silent_p.G100G|FRG1B_ENST00000358464.4_Silent_p.G95G														p.G95G(4)		endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						ATGAAGCAGGGGACATAGAAG	0.378000													5	99					0	0	1	0	0
EML3	256364	broad.mit.edu	37	11	62375178	62375178	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr11:62375178G>A	ENST00000394773.2	-	11	1629	c.1322C>T	c.(1321-1323)cCt>cTt	p.P441L	EML3_ENST00000531557.1_Missense_Mutation_p.P224L|EML3_ENST00000529309.1_Missense_Mutation_p.P441L|EML3_ENST00000278845.4_Missense_Mutation_p.P442L|EML3_ENST00000494176.2_Missense_Mutation_p.P413L|EML3_ENST00000438258.1_Intron	NM_153265.2	NP_694997.2	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like 3	441						cytoplasm|microtubule	protein binding			biliary_tract(1)|breast(3)|endometrium(4)|kidney(2)|large_intestine(1)|lung(11)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	26						CCCATTCCCAGGAACCCCTAC	0.577000													5	84					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101436230	101436230	+	Missense_Mutation	SNP	G	G	T			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr12:101436230G>T	ENST00000392979.3	+	11	1394	c.1033G>T	c.(1033-1035)Gat>Tat	p.D345Y	ANO4_ENST00000392977.3_Missense_Mutation_p.D380Y|ANO4_ENST00000299222.9_5'UTR	NM_178826.3	NP_849148.2	Q32M45	ANO4_HUMAN	anoctamin 4	380						chloride channel complex	chloride channel activity			NS(1)|biliary_tract(1)|breast(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(14)|lung(33)|ovary(4)|prostate(5)|skin(7)|stomach(2)|urinary_tract(1)	78						CACCACTCTGGATCACAGCCA	0.488000										HNSCC(74;0.22)			12	93					2.32078e-09	2.55286e-09	1	1	0
LINC00969	0	broad.mit.edu	37	3	195400795	195400795	+	RNA	SNP	C	C	T	rs7615357	by1000genomes	TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr3:195400795C>T	ENST00000445430.1	+	0	1391																											GGGGCAAACTCGCTGTTGGAC	0.592000													4	39					0	0	1	0	0
FRYL	285527	broad.mit.edu	37	4	48567706	48567706	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr4:48567706G>A	ENST00000537810.1	-	29	3776	c.3172C>T	c.(3172-3174)Cac>Tac	p.H1058Y	FRYL_ENST00000503238.1_Missense_Mutation_p.H1058Y|FRYL_ENST00000507711.1_Missense_Mutation_p.H1058Y|FRYL_ENST00000264319.7_5'UTR|FRYL_ENST00000358350.4_Missense_Mutation_p.H1058Y			O94915	FRYL_HUMAN	FRY-like	1058					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			breast(2)|central_nervous_system(2)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(21)|lung(38)|ovary(1)|pancreas(1)|prostate(3)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	91						CTTCTCTGGTGCACTGTGAAT	0.338000													5	42					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27445189	27445189	+	Silent	SNP	A	A	G			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr2:27445189A>G	ENST00000264705.4	+	4	642	c.480A>G	c.(478-480)ccA>ccG	p.P160P	CAD_ENST00000403525.1_Silent_p.P160P	NM_004341.3	NP_004332.2	P27708	PYR1_HUMAN	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	160	GATase (Glutamine amidotransferase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			NS(1)|breast(1)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(19)|lung(40)|ovary(6)|pancreas(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	92	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	CCCTGGTACCAGAGGTCTCCA	0.542000													10	53					0	0	1	0	0
RP11-798G7.5	0	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs149697015	by1000genomes	TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr17:43587569G>C	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							aactccgtctgaaaagaaaag	0.443000													3	43					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155349888	155349889	+	Frame_Shift_Ins	INS	-	-	T			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr1:155349888_155349889insT	ENST00000368346.3	-	8	6776_6777	c.6137_6138insA	c.(6136-6138)aagfs	p.K2046fs	ASH1L_ENST00000392403.3_Frame_Shift_Ins_p.K2041fs			Q9NR48	ASH1L_HUMAN	ash1 (absent, small, or homeotic)-like (Drosophila)	2046					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			autonomic_ganglia(1)|breast(4)|central_nervous_system(1)|endometrium(12)|kidney(13)|large_intestine(28)|lung(39)|ovary(2)|pancreas(1)|prostate(6)|skin(11)|upper_aerodigestive_tract(2)|urinary_tract(4)	124	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			AGTCAATTCTCTTTTGTCTTAG	0.347													11	74	---	---	---	---					
AC018890.6	0	broad.mit.edu	37	2	175585079	175585079	+	RNA	DEL	A	A	-			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr2:175585079delA	ENST00000442996.1	+	0	217																											TTTCATTCTCAAAAAAAAAAA	0.368											OREG0015078	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	10	---	---	---	---					
ZNRD1-AS1	0	broad.mit.edu	37	6	29977389	29977393	+	RNA	DEL	CTTCT	CTTCT	-			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr6:29977389_29977393delCTTCT	ENST00000376797.3	-	0	731				ZNRD1-AS1_ENST00000448093.1_RNA|HLA-J_ENST00000462773.1_RNA|ZNRD1-AS1_ENST00000425604.1_RNA|ZNRD1-AS1_ENST00000420251.1_RNA																							AGAACCCTGACTTCTCTTTCTGCAA	0.488													7	24	---	---	---	---					
RP11-274B21.1	0	broad.mit.edu	37	7	128210234	128210235	+	RNA	INS	-	-	TT	rs57917869		TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr7:128210234_128210235insTT	ENST00000605862.1	+	0	189																											agttttagttcttTTTTTTTTT	0.441													3	4	---	---	---	---					
KIAA1984	84960	broad.mit.edu	37	9	139700688	139700688	+	Frame_Shift_Del	DEL	C	C	-			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr9:139700688delC	ENST00000338005.6	+	10	1142	c.1107delC	c.(1105-1107)atfs	p.I369fs	KIAA1984_ENST00000371682.3_3'UTR|KIAA1984-AS1_ENST00000414656.1_RNA	NM_001039374.4	NP_001034463.4	Q5T5S1	K1984_HUMAN	KIAA1984	369										biliary_tract(1)|breast(1)|endometrium(1)|kidney(2)|lung(4)|ovary(1)|pancreas(1)|prostate(1)|urinary_tract(1)	13	all_cancers(76;0.0882)|all_epithelial(76;0.228)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.33e-06)|Epithelial(140;0.000124)		CTAGCTCCATCAGGTGCCCCG	0.672													2	4	---	---	---	---					
TRPV1	7442	broad.mit.edu	37	17	3491535	3491535	+	Frame_Shift_Del	DEL	A	A	-			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr17:3491535delA	ENST00000174621.6	-	6	1454	c.1165delT	c.(1165-1167)gcfs	p.C389fs	TRPV1_ENST00000310522.5_Intron|SHPK_ENST00000572705.1_Frame_Shift_Del_p.C391fs|TRPV1_ENST00000576351.1_Frame_Shift_Del_p.C391fs|TRPV1_ENST00000399756.4_Frame_Shift_Del_p.C391fs|TRPV1_ENST00000399759.3_Frame_Shift_Del_p.C391fs|TRPV1_ENST00000571088.1_Frame_Shift_Del_p.C391fs|TRPV1_ENST00000425167.2_Frame_Shift_Del_p.C402fs			Q8NER1	TRPV1_HUMAN	transient receptor potential cation channel, subfamily V, member 1	391					cell surface receptor linked signaling pathway|chemosensory behavior|thermoception	cell junction|dendritic spine membrane|integral to plasma membrane|postsynaptic membrane	ATP binding|calcium channel activity|calmodulin binding			central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(4)|lung(5)|ovary(1)|prostate(1)|urinary_tract(1)	17				Lung(1;0.055)|COAD - Colon adenocarcinoma(5;0.0896)|LUAD - Lung adenocarcinoma(1115;0.131)	Alpha-Linolenic Acid(DB00132)|Aspartame(DB00168)|Icosapent(DB00159)	TTCTTCTCGCAGGTGTCGATG	0.657													2	4	---	---	---	---					
AC022596.6	0	broad.mit.edu	37	17	16722880	16722881	+	RNA	DEL	AG	AG	-			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr17:16722880_16722881delAG	ENST00000417510.1	-	0	932_933																											GGTCCACACCAGGTGCATCGTC	0.554													12	29	---	---	---	---					
AC008103.5	0	broad.mit.edu	37	22	18842473	18842473	+	RNA	DEL	G	G	-	rs66618606		TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr22:18842473delG	ENST00000412938.1	+	0	2208																											AGCTGCTGGTGGGGAGGTCTT	0.647													6	4	---	---	---	---					
RANGAP1	5905	broad.mit.edu	37	22	41650469	41650471	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-V1-A8ML-01A-11D-A377-08	TCGA-V1-A8ML-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	cec2fc20-36ef-4bd5-9496-d19a0ff4b6e1	291dc91d-9f58-4a35-8a15-ebbc601c6bdb	g.chr22:41650469_41650471delTCC	ENST00000455915.2	-	10	2570_2572	c.1101_1103delGGA	c.(1099-1104)gaa>ga	p.EE367del	RANGAP1_ENST00000405486.1_In_Frame_Del_p.EE367del|RANGAP1_ENST00000356244.3_In_Frame_Del_p.EE367del|RANGAP1_ENST00000407260.4_In_Frame_Del_p.EE312del			P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	367	Asp/Glu-rich (highly acidic).				mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(3)|lung(7)|upper_aerodigestive_tract(1)|urinary_tract(1)	19						ctcttctccttcctcctcctcct	0.562													8	103	---	---	---	---					
