Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LAMB2	3913	broad.mit.edu	37	3	49162454	49162454	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr3:49162454G>A	ENST00000418109.1	-	21	3033	c.2869C>T	c.(2869-2871)Cgg>Tgg	p.R957W	LAMB2_ENST00000464891.1_5'UTR|LAMB2_ENST00000305544.4_Missense_Mutation_p.R957W	NM_002292.3	NP_002283.3	P55268	LAMB2_HUMAN	laminin, beta 2 (laminin S)	957	Laminin EGF-like 9.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			NS(1)|breast(1)|endometrium(15)|kidney(3)|large_intestine(6)|lung(21)|ovary(4)|prostate(2)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	61				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TAGCCTGCCCGGCAGTGGCAC	0.617000													3	60					0	0	1	0	0
CECR7	0	broad.mit.edu	37	22	17525813	17525813	+	RNA	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr22:17525813C>T	ENST00000441006.1	+	0	826					NR_015352.1																						TCTGCGACACCGGGGACAGAG	0.522000													3	39					0	0	1	0	0
TULP4	56995	broad.mit.edu	37	6	158924858	158924858	+	Missense_Mutation	SNP	A	A	G			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr6:158924858A>G	ENST00000367097.3	+	13	5520	c.4163A>G	c.(4162-4164)aAa>aGa	p.K1388R	TULP4_ENST00000367094.2_Intron	NM_020245.4	NP_064630.2	Q9NRJ4	TULP4_HUMAN	tubby like protein 4	1388					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			endometrium(7)|kidney(2)|large_intestine(15)|lung(17)|ovary(1)|pancreas(1)|prostate(2)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	49		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		AAGAGTCAGAAAGACCAACTG	0.488000													3	23					0	0	1	0	0
OR5T2	219464	broad.mit.edu	37	11	56000622	56000622	+	Missense_Mutation	SNP	A	A	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr11:56000622A>T	ENST00000313264.4	-	1	115	c.40T>A	c.(40-42)Ttg>Atg	p.L14M		NM_001004746.1	NP_001004746.1	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T, member 2	14					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(6)|kidney(1)|large_intestine(5)|lung(22)|ovary(2)|prostate(1)|skin(1)|stomach(3)	41	Esophageal squamous(21;0.00448)					CCATGACTCAAGGGGATGTTA	0.358000													16	66					0	0	1	0	0
FREM2	341640	broad.mit.edu	37	13	39435627	39435627	+	Missense_Mutation	SNP	C	C	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr13:39435627C>A	ENST00000280481.7	+	15	7795	c.7579C>A	c.(7579-7581)Cgc>Agc	p.R2527S		NM_207361.4	NP_997244.3	Q5SZK8	FREM2_HUMAN	FRAS1 related extracellular matrix protein 2	2527					cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(2)|central_nervous_system(2)|cervix(1)|endometrium(14)|haematopoietic_and_lymphoid_tissue(3)|kidney(8)|large_intestine(35)|lung(39)|ovary(9)|pancreas(2)|prostate(12)|skin(11)|upper_aerodigestive_tract(7)|urinary_tract(2)	148		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		AGCTAAATTGCGCTACACAGG	0.458000													15	46					8.60227e-14	1.0071e-13	1	1	0
MYH14	79784	broad.mit.edu	37	19	50752255	50752255	+	Silent	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr19:50752255G>A	ENST00000440075.2	+	13	1388	c.1341G>A	c.(1339-1341)gcG>gcA	p.A447A	MYH14_ENST00000601313.1_Silent_p.A447A|MYH14_ENST00000598205.1_Silent_p.A447A|MYH14_ENST00000596571.1_Silent_p.A439A|MYH14_ENST00000425460.1_Silent_p.A447A|MYH14_ENST00000376970.2_Silent_p.A439A|MYH14_ENST00000262269.8_Silent_p.A447A			Q7Z406	MYH14_HUMAN	myosin, heavy chain 14, non-muscle	439	Myosin head-like.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)|cervix(2)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(10)|ovary(1)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(1)	46		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		CTGACTTCGCGCTGGAGGCCC	0.687000													3	17					0	0	1	0	0
OR5W2	390148	broad.mit.edu	37	11	55681766	55681766	+	Missense_Mutation	SNP	G	G	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr11:55681766G>T	ENST00000344514.1	-	1	292	c.293C>A	c.(292-294)gCt>gAt	p.A98D		NM_001001960.1	NP_001001960.1	Q8NH69	OR5W2_HUMAN	olfactory receptor, family 5, subfamily W, member 2	98					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(7)|lung(28)|ovary(1)|pancreas(1)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	49						GAATTGCAGAGCACAGCCATA	0.473000													9	42					2.74318e-10	3.06215e-10	1	1	0
IFNA14	3448	broad.mit.edu	37	9	21239506	21239506	+	Silent	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr9:21239506C>T	ENST00000380222.2	-	1	472	c.429G>A	c.(427-429)gtG>gtA	p.V143V		NM_002172.2	NP_002163.2	P01570	IFN14_HUMAN	interferon, alpha 14	143					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(7)	11				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AGTATTTCTTCACAGCCAGGA	0.463000													74	229					0	0	1	0	0
ZIC3	7547	broad.mit.edu	37	X	136651109	136651109	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chrX:136651109C>T	ENST00000287538.5	+	2	1659	c.1109C>T	c.(1108-1110)gCc>gTc	p.A370V	ZIC3_ENST00000478471.1_3'UTR|ZIC3_ENST00000370606.3_Missense_Mutation_p.A370V	NM_003413.3	NP_003404.1	O60481	ZIC3_HUMAN	Zic family member 3	370					cell differentiation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(6)|large_intestine(3)|liver(1)|lung(18)|ovary(3)|soft_tissue(2)|urinary_tract(1)	37	Acute lymphoblastic leukemia(192;0.000127)					AGACGCTTTGCCAACAGCAGC	0.512000													4	171					0	0	1	0	0
ZMYND19	116225	broad.mit.edu	37	9	140481540	140481540	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr9:140481540C>T	ENST00000298585.2	-	4	464	c.238G>A	c.(238-240)Gtg>Atg	p.V80M	ZMYND19_ENST00000471957.1_5'UTR	NM_138462.2	NP_612471.1	Q96E35	ZMY19_HUMAN	zinc finger, MYND-type containing 19	80						Golgi apparatus|plasma membrane	zinc ion binding			endometrium(1)|large_intestine(2)|lung(5)|prostate(1)|skin(2)|soft_tissue(1)|urinary_tract(1)	13	all_cancers(76;0.106)			OV - Ovarian serous cystadenocarcinoma(145;0.000275)|Epithelial(140;0.00047)		CCCGGGGCCACGCCCCCCCGG	0.632000													7	51					0	0	1	0	0
TUBB8P7	0	broad.mit.edu	37	16	90162513	90162513	+	RNA	SNP	T	T	C			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr16:90162513T>C	ENST00000567960.1	+	0	1249				TUBB8P7_ENST00000564451.1_RNA														p.N415N(2)									GCAACATGAATGACCTGGTGT	0.537000													4	90					0	0	1	0	0
LGI2	55203	broad.mit.edu	37	4	25005538	25005538	+	Silent	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr4:25005538G>A	ENST00000382114.4	-	8	1358	c.1173C>T	c.(1171-1173)agC>agT	p.S391S		NM_018176.3	NP_060646.2	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	391						extracellular region				breast(2)|endometrium(2)|kidney(2)|large_intestine(6)|lung(15)|prostate(1)|skin(3)|stomach(2)	33		Breast(46;0.173)				CCTGGGAGCGGCTGGACAGGA	0.507000													4	110					0	0	1	0	0
B3GNT9	84752	broad.mit.edu	37	16	67183794	67183794	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr16:67183794C>T	ENST00000449549.3	-	2	1130	c.595G>A	c.(595-597)Gac>Aac	p.D199N		NM_033309.2	NP_171608.2	Q6UX72	B3GN9_HUMAN	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	199					protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(1)	6						AAAAAGGTGTCGTCGAAGGCC	0.622000													3	17					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128493622	128493622	+	Missense_Mutation	SNP	C	C	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr7:128493622C>A	ENST00000325888.8	+	38	6569	c.6308C>A	c.(6307-6309)aCc>aAc	p.T2103N	RP11-309L24.2_ENST00000469965.1_RNA|FLNC_ENST00000346177.6_Missense_Mutation_p.T2070N	NM_001458.4	NP_001449.3	Q14315	FLNC_HUMAN	filamin C, gamma	2103					cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			biliary_tract(1)|breast(7)|central_nervous_system(1)|cervix(1)|endometrium(19)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(19)|lung(59)|ovary(2)|pancreas(2)|prostate(1)|skin(6)|upper_aerodigestive_tract(2)	128						TACTGCCCCACCGAGCCCGGC	0.582000													5	26					1.23904e-05	1.29291e-05	1	1	0
UBE2F	140739	broad.mit.edu	37	2	238940869	238940869	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr2:238940869G>A	ENST00000272930.4	+	8	612	c.418G>A	c.(418-420)Gtt>Att	p.V140I	UBE2F_ENST00000414443.1_Missense_Mutation_p.V108I|UBE2F_ENST00000409633.1_Missense_Mutation_p.V140I|UBE2F_ENST00000409332.1_Missense_Mutation_p.V118I|UBE2F-SCLY_ENST00000449191.1_Intron|UBE2F_ENST00000409953.1_Missense_Mutation_p.V116I	NM_001278305.1|NM_080678.2	NP_001265234.1|NP_542409.1	Q969M7	UBE2F_HUMAN	ubiquitin-conjugating enzyme E2F (putative)	140					protein neddylation		ATP binding|NEDD8 ligase activity|protein binding			endometrium(1)|large_intestine(1)	2		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;6.7e-23)|OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|Kidney(56;3.53e-09)|KIRC - Kidney renal clear cell carcinoma(57;9.79e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000136)|Lung(119;0.0126)|LUSC - Lung squamous cell carcinoma(224;0.0301)		TCAGGATGTCGTTTGGGGATT	0.338000													14	29					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38595989	38595989	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr3:38595989C>T	ENST00000413689.1	-	27	4787	c.4594G>A	c.(4594-4596)Gtc>Atc	p.V1532I	SCN5A_ENST00000455624.2_Missense_Mutation_p.V1531I|SCN5A_ENST00000451551.2_Missense_Mutation_p.V1478I|SCN5A_ENST00000443581.1_Missense_Mutation_p.V1531I|SCN5A_ENST00000423572.2_Missense_Mutation_p.V1531I|SCN5A_ENST00000464652.1_5'UTR|SCN5A_ENST00000425664.1_Missense_Mutation_p.V1514I|SCN5A_ENST00000414099.2_Missense_Mutation_p.V1514I|SCN5A_ENST00000333535.4_Missense_Mutation_p.V1532I|SCN5A_ENST00000450102.2_Missense_Mutation_p.V1478I|SCN5A_ENST00000449557.2_Missense_Mutation_p.V1478I	NM_001099404.1|NM_001160160.1	NP_001092874.1|NP_001153632.1	Q14524	SCN5A_HUMAN	sodium channel, voltage-gated, type V, alpha subunit	1532					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			NS(3)|breast(2)|central_nervous_system(3)|cervix(2)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(25)|lung(27)|ovary(6)|pancreas(3)|prostate(10)|skin(9)|upper_aerodigestive_tract(4)	107	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	ATGATGGTGACGTCAAAGGCC	0.483000													7	60					0	0	1	0	0
C4BPA	722	broad.mit.edu	37	1	207297289	207297289	+	Missense_Mutation	SNP	A	A	G	rs146506452		TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr1:207297289A>G	ENST00000367070.3	+	5	645	c.451A>G	c.(451-453)Act>Gct	p.T151A		NM_000715.3	NP_000706.1	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	151	Sushi 2.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			breast(1)|central_nervous_system(2)|endometrium(1)|kidney(2)|large_intestine(10)|lung(7)|ovary(2)|skin(1)|urinary_tract(2)	28						TGGCTCAACCACTAGTCGTTG	0.353000													3	26					0	0	1	0	0
LSMD1	84316	broad.mit.edu	37	17	7760441	7760441	+	Missense_Mutation	SNP	T	T	C			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr17:7760441T>C	ENST00000333775.5	-	1	731	c.301A>G	c.(301-303)Atg>Gtg	p.M101V	LSMD1_ENST00000576861.1_Missense_Mutation_p.M27V|LSMD1_ENST00000335155.5_Missense_Mutation_p.M53V|LSMD1_ENST00000576384.1_Start_Codon_SNP_p.M1V|LSMD1_ENST00000575771.1_Start_Codon_SNP_p.M1V|LSMD1_ENST00000575071.1_Start_Codon_SNP_p.M1V|LSMD1_ENST00000575208.1_Start_Codon_SNP_p.M1V	NM_032356.3	NP_115732.2	Q9BRA0	LSMD1_HUMAN	LSM domain containing 1	53						cytoplasm|nucleus				endometrium(1)|lung(2)|ovary(1)	4		all_cancers(10;0.11)|Prostate(122;0.219)				CGAATGCGCATAGTCTTGTTG	0.622000											OREG0024146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	88					0	0	1	0	0
HEY2	23493	broad.mit.edu	37	6	126080635	126080635	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr6:126080635C>T	ENST00000368364.3	+	5	898	c.701C>T	c.(700-702)gCg>gTg	p.A234V	HEY2_ENST00000368365.1_Missense_Mutation_p.A188V	NM_012259.2	NP_036391.1	Q9UBP5	HEY2_HUMAN	hes-related family bHLH transcription factor with YRPW motif 2	234					negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription initiation from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|Notch signaling pathway|smooth muscle cell differentiation|transcription, DNA-dependent	transcriptional repressor complex	histone deacetylase binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding			breast(1)|large_intestine(7)|lung(5)|prostate(1)	14				UCEC - Uterine corpus endometrioid carcinoma (4;0.0608)|GBM - Glioblastoma multiforme(226;0.0361)|all cancers(137;0.193)		TTTGCCCATGCGGATTCAGCC	0.647000													4	184					0	0	1	0	0
MAN2A2	4122	broad.mit.edu	37	15	91449677	91449677	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr15:91449677C>T	ENST00000360468.3	+	5	803	c.785C>T	c.(784-786)gCa>gTa	p.A262V	MAN2A2_ENST00000559717.1_Missense_Mutation_p.A262V	NM_006122.2	NP_006113.2	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	262					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			NS(1)|autonomic_ganglia(1)|breast(2)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(9)|lung(13)|ovary(4)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	47	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CACTACTTTGCATTGATTGAC	0.557000													7	35					0	0	1	0	0
SLC38A9	153129	broad.mit.edu	37	5	54993715	54993715	+	Silent	SNP	A	A	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr5:54993715A>T	ENST00000539768.1	-	1	71	c.72T>A	c.(70-72)ccT>ccA	p.P24P	SLC38A9_ENST00000318672.3_Silent_p.P24P|SLC38A9_ENST00000416547.2_5'UTR|SLC38A9_ENST00000504880.1_5'UTR|SLC38A9_ENST00000396865.2_Silent_p.P24P			Q8NBW4	S38A9_HUMAN	solute carrier family 38, member 9	24					amino acid transport|sodium ion transport	integral to membrane				endometrium(1)|kidney(1)|large_intestine(3)|lung(3)	8		Lung NSC(810;0.00122)|Prostate(74;0.0376)|Breast(144;0.181)				GGATATTCATAGGTCCAGGAT	0.353000													14	62					0	0	1	0	0
LARP4B	23185	broad.mit.edu	37	10	871233	871233	+	Missense_Mutation	SNP	C	C	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr10:871233C>A	ENST00000316157.3	-	12	1296	c.1256G>T	c.(1255-1257)cGg>cTg	p.R419L		NM_015155.1	NP_055970.1	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	419							nucleotide binding|RNA binding			NS(1)|breast(2)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(13)|lung(13)|ovary(2)|skin(2)|urinary_tract(2)	38						AATCGCATGCCGCAGATGAGA	0.378000													13	81					2.27111e-07	2.42252e-07	1	1	0
KIF14	9928	broad.mit.edu	37	1	200587123	200587123	+	Silent	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr1:200587123C>T	ENST00000367350.4	-	2	1167	c.729G>A	c.(727-729)aaG>aaA	p.K243K		NM_014875.2	NP_055690.1	Q15058	KIF14_HUMAN	kinesin family member 14	243	Required for PRC1-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			NS(1)|breast(5)|central_nervous_system(2)|endometrium(8)|kidney(8)|large_intestine(15)|lung(13)|ovary(3)|prostate(2)|skin(3)|urinary_tract(1)	61						TGATATCCAACTTGCTCTGAG	0.378000													6	162					0	0	1	0	0
PPP1R8	5511	broad.mit.edu	37	1	28167550	28167550	+	Missense_Mutation	SNP	T	T	G			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr1:28167550T>G	ENST00000311772.5	+	4	355	c.297T>G	c.(295-297)atT>atG	p.I99M	PPP1R8_ENST00000236412.7_Intron|PPP1R8_ENST00000373931.4_5'UTR	NM_014110.4	NP_054829.2	Q12972	PP1R8_HUMAN	protein phosphatase 1, regulatory subunit 8	99	FHA.|Interaction with CDC5L, SF3B1 and MELK.				mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|RNA splicing|transcription, DNA-dependent	cytoplasm|nuclear speck|spliceosomal complex	DNA binding|endonuclease activity|protein binding|protein serine/threonine phosphatase inhibitor activity|ribonuclease E activity|RNA binding			breast(2)|cervix(1)|endometrium(2)|lung(2)|upper_aerodigestive_tract(1)	8		Colorectal(325;3.46e-05)|all_lung(284;0.000129)|Lung NSC(340;0.000259)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;2.76e-24)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00248)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)		TGGGTCACATTCGGTTGGAAC	0.483000													10	67					0	0	1	0	0
SLC4A2	6522	broad.mit.edu	37	7	150767855	150767855	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr7:150767855C>T	ENST00000485713.1	+	12	2646	c.1606C>T	c.(1606-1608)Cgg>Tgg	p.R536W	SLC4A2_ENST00000461735.1_Missense_Mutation_p.R522W|SLC4A2_ENST00000392826.2_Missense_Mutation_p.R527W|SLC4A2_ENST00000413384.2_Missense_Mutation_p.R536W|SLC4A2_ENST00000310317.5_Missense_Mutation_p.R454W	NM_001199692.1	NP_001186621.1	P04920	B3A2_HUMAN	solute carrier family 4 (anion exchanger), member 2	536					bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity			NS(1)|central_nervous_system(2)|endometrium(3)|kidney(1)|large_intestine(2)|liver(2)|lung(14)|prostate(3)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(1)	33			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCCTTTGTGCGGCTCCGGGA	0.647000													3	34					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49670758	49670758	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr16:49670758C>T	ENST00000561648.1	-	4	2358	c.2305G>A	c.(2305-2307)Gtc>Atc	p.V769I	ZNF423_ENST00000262383.2_Missense_Mutation_p.V769I|ZNF423_ENST00000563137.2_Missense_Mutation_p.V709I|ZNF423_ENST00000535559.1_Missense_Mutation_p.V652I|ZNF423_ENST00000567169.1_Missense_Mutation_p.V652I|ZNF423_ENST00000562871.1_Missense_Mutation_p.V709I|ZNF423_ENST00000562520.1_Missense_Mutation_p.V709I	NM_001271620.1	NP_001258549.1	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	769					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(8)|kidney(6)|large_intestine(16)|lung(47)|ovary(1)|pancreas(2)|prostate(4)|skin(1)|urinary_tract(2)	89		all_cancers(37;0.0155)				CTGTGTTTGACGTGCACCTGC	0.607000													3	31					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48773910	48773910	+	Silent	SNP	T	T	C			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr15:48773910T>C	ENST00000316623.5	-	32	4361	c.3906A>G	c.(3904-3906)tcA>tcG	p.S1302S		NM_000138.4	NP_000129.3	P35555	FBN1_HUMAN	fibrillin 1	1302	EGF-like 21; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			NS(1)|breast(5)|cervix(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(4)|kidney(6)|large_intestine(43)|liver(1)|lung(49)|ovary(4)|pancreas(1)|prostate(9)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(2)	139		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		GGCAGATAAATGAGCCTTTCG	0.363000													26	93					0	0	1	0	0
CA6	765	broad.mit.edu	37	1	9019055	9019055	+	Silent	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr1:9019055C>T	ENST00000377443.2	+	4	499	c.495C>T	c.(493-495)ttC>ttT	p.F165F	CA6_ENST00000377442.2_Silent_p.F105F|CA6_ENST00000476083.1_3'UTR|CA6_ENST00000377436.3_Silent_p.F165F	NM_001215.3	NP_001206.2	P23280	CAH6_HUMAN	carbonic anhydrase VI	165					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding	p.F165F(1)		endometrium(1)|kidney(1)|large_intestine(3)|lung(3)|ovary(2)|prostate(1)|skin(5)	16	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCAGCCTTCGTTGAGGTAA	0.408000													11	121					0	0	1	0	0
CEP120	153241	broad.mit.edu	37	5	122720737	122720737	+	Missense_Mutation	SNP	C	C	A	rs75289011	byFrequency	TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr5:122720737C>A	ENST00000306467.5	-	11	1975	c.1671G>T	c.(1669-1671)ttG>ttT	p.L557F	CEP120_ENST00000328236.5_Missense_Mutation_p.L557F|CEP120_ENST00000306481.6_Missense_Mutation_p.L531F			Q8N960	CE120_HUMAN	centrosomal protein 120kDa	557						centrosome				breast(3)|central_nervous_system(1)|cervix(1)|endometrium(1)|kidney(4)|large_intestine(8)|lung(8)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	29						TTTCTGAAGACAAGATGTTAG	0.388000													6	49					0.00116845	0.00116845	1	1	0
UBR7	55148	broad.mit.edu	37	14	93684909	93684909	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr14:93684909G>A	ENST00000013070.6	+	7	874	c.638G>A	c.(637-639)cGg>cAg	p.R213Q	UBR7_ENST00000416753.1_Missense_Mutation_p.R137Q|RP11-371E8.4_ENST00000557048.1_3'UTR	NM_175748.3	NP_786924.2	Q8N806	UBR7_HUMAN	ubiquitin protein ligase E3 component n-recognin 7 (putative)	213							ubiquitin-protein ligase activity|zinc ion binding			breast(2)|endometrium(2)|large_intestine(2)|lung(12)|urinary_tract(1)	19						GGATTGGTGCGGAACATTGAT	0.393000													3	51					0	0	1	0	0
EMC2	9694	broad.mit.edu	37	8	109489050	109489050	+	Missense_Mutation	SNP	T	T	G			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr8:109489050T>G	ENST00000220853.3	+	9	666	c.631T>G	c.(631-633)Tca>Gca	p.S211A	EMC2_ENST00000520294.1_3'UTR	NM_014673.3	NP_055488.1			ER membrane protein complex subunit 2																		CCTCGAACTTTCAAGAAAGTA	0.333000													10	26					0	0	1	0	0
EAPP	55837	broad.mit.edu	37	14	34993940	34993940	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr14:34993940G>A	ENST00000250454.3	-	5	625	c.544C>T	c.(544-546)Cct>Tct	p.P182S		NM_018453.3	NP_060923.2	Q56P03	EAPP_HUMAN	E2F-associated phosphoprotein	182					negative regulation of transcription elongation from RNA polymerase II promoter|positive regulation of cell proliferation|positive regulation of transcription elongation from RNA polymerase II promoter	Golgi apparatus|nucleus|plasma membrane				breast(1)|endometrium(1)|large_intestine(3)|lung(4)|ovary(1)|urinary_tract(2)	12	Breast(36;0.0473)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00342)|Epithelial(34;0.18)	GBM - Glioblastoma multiforme(112;0.0196)		ATGCAGGCAGGACAATTCAAG	0.423000													3	59					0	0	1	0	0
DPYSL4	10570	broad.mit.edu	37	10	134017271	134017271	+	Silent	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr10:134017271G>A	ENST00000338492.4	+	13	1631	c.1467G>A	c.(1465-1467)gcG>gcA	p.A489A	DPYSL4_ENST00000368629.1_Silent_p.A329A|DPYSL4_ENST00000368627.1_Silent_p.A329A	NM_006426.2	NP_006417.2	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	489					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			NS(1)|central_nervous_system(2)|endometrium(5)|kidney(1)|large_intestine(4)|lung(12)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	32		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		GGCAGCTGGCGGAGATCCACG	0.716000													3	34					0	0	1	0	0
RPP30	10556	broad.mit.edu	37	10	92655210	92655210	+	Splice_Site	SNP	G	G	C			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr10:92655210G>C	ENST00000413330.1	+	8	584		c.e8-1		RPP30_ENST00000489806.1_Splice_Site|RPP30_ENST00000371703.3_Splice_Site	NM_001104546.1	NP_001098016.1	P78346	RPP30_HUMAN	ribonuclease P/MRP 30kDa subunit						tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity			central_nervous_system(1)|large_intestine(2)|lung(3)|prostate(1)|skin(1)	8						CTATTTTGTAGAATGTAATTA	0.274000													8	125					0	0	1	0	0
PIK3CG	5294	broad.mit.edu	37	7	106515220	106515220	+	Missense_Mutation	SNP	A	A	G			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr7:106515220A>G	ENST00000359195.3	+	5	2673	c.2363A>G	c.(2362-2364)gAt>gGt	p.D788G	PIK3CG_ENST00000440650.2_Missense_Mutation_p.D788G|PIK3CG_ENST00000496166.1_Missense_Mutation_p.D788G	NM_002649.2	NP_002640.2	P48736	PK3CG_HUMAN	phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma	788					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			breast(7)|central_nervous_system(9)|cervix(1)|endometrium(6)|kidney(4)|large_intestine(16)|liver(4)|lung(59)|ovary(4)|pancreas(4)|prostate(3)|skin(6)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(1)	132						GTTCCATATGATCCTGGACTG	0.433000													11	72					0	0	1	0	0
PLEKHA8	84725	broad.mit.edu	37	7	30118250	30118250	+	Silent	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr7:30118250G>A	ENST00000449726.1	+	14	1757	c.1407G>A	c.(1405-1407)gcG>gcA	p.A469A	PLEKHA8_ENST00000396257.2_Intron|PLEKHA8_ENST00000258679.7_Intron|PLEKHA8_ENST00000396259.1_Intron	NM_001197027.1	NP_001183956.1	Q96JA3	PKHA8_HUMAN	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	469					protein transport	cytoplasm	glycolipid binding|glycolipid transporter activity			breast(4)|large_intestine(3)|lung(8)|ovary(1)|prostate(1)	17						TTGTGGCCGCGTTAACCGTAA	0.478000													4	37					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48685794	48685794	+	Missense_Mutation	SNP	C	C	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr3:48685794C>A	ENST00000544264.1	-	20	7173	c.6893G>T	c.(6892-6894)gGa>gTa	p.G2298V	CELSR3_ENST00000164024.4_Missense_Mutation_p.G2293V			Q9NYQ7	CELR3_HUMAN	cadherin, EGF LAG seven-pass G-type receptor 3	2293					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			NS(1)|biliary_tract(1)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(7)|lung(23)|ovary(9)|prostate(6)|skin(7)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(5)	83				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCTCACCAGTCCCGCGCTGCC	0.642000													11	16					3.86212e-05	3.94429e-05	1	1	0
GOLGA8DP	0	broad.mit.edu	37	15	22709637	22709637	+	RNA	SNP	T	T	G	rs140467724	by1000genomes	TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr15:22709637T>G	ENST00000314246.8	-	0	1147																											CCCATCTGGTTTTTGAGTTTG	0.547000													5	228					0	0	1	0	0
CHD2	1106	broad.mit.edu	37	15	93545418	93545418	+	Silent	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr15:93545418G>A	ENST00000394196.4	+	33	5217	c.4149G>A	c.(4147-4149)ttG>ttA	p.L1383L	CHD2_ENST00000557381.1_Silent_p.L1383L	NM_001271.3	NP_001262.3	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1383					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			breast(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(5)|kidney(2)|large_intestine(10)|lung(17)|ovary(1)|prostate(2)|skin(2)|stomach(1)|urinary_tract(2)	47	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			ATGATGGCTTGGAAAAAAGTC	0.368000													5	115					0	0	1	0	0
DCAF12L1	139170	broad.mit.edu	37	X	125685734	125685734	+	Missense_Mutation	SNP	G	G	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chrX:125685734G>T	ENST00000371126.1	-	1	1100	c.858C>A	c.(856-858)ttC>ttA	p.F286L		NM_178470.4	NP_848565.2	Q5VU92	DC121_HUMAN	DDB1 and CUL4 associated factor 12-like 1	286								p.F286L(1)		breast(1)|central_nervous_system(3)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(6)|lung(39)|ovary(2)|prostate(1)|skin(3)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	68						TCCACAGGTGGAAGTAGCCGT	0.607000													12	29					1.5842e-08	1.72822e-08	1	1	0
RNF213	57674	broad.mit.edu	37	17	78286955	78286955	+	Silent	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr17:78286955C>T	ENST00000582970.1	+	15	2942	c.2799C>T	c.(2797-2799)gtC>gtT	p.V933V	RNF213_ENST00000319921.4_Silent_p.V933V|RNF213_ENST00000508628.2_Silent_p.V982V|RNF213_ENST00000456466.1_Silent_p.V933V	NM_001256071.1	NP_001243000.1	Q9HCF4	ALO17_HUMAN	ring finger protein 213	933										NS(1)|breast(7)|central_nervous_system(1)|cervix(3)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(18)|large_intestine(23)|lung(36)|ovary(11)|pancreas(2)|prostate(4)|skin(3)|stomach(3)|upper_aerodigestive_tract(1)|urinary_tract(3)	130	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TCACATACGTCAAGGAAATTG	0.498000													10	86					0	0	1	0	0
LRIF1	55791	broad.mit.edu	37	1	111494472	111494472	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr1:111494472G>A	ENST00000369763.4	-	2	1424	c.1034C>T	c.(1033-1035)aCg>aTg	p.T345M	RP11-96K19.2_ENST00000440689.1_RNA|LRIF1_ENST00000485275.2_Intron|LRIF1_ENST00000494675.1_Intron	NM_018372.3	NP_060842.3	Q5T3J3	LRIF1_HUMAN	ligand dependent nuclear receptor interacting factor 1	345					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding			endometrium(2)|kidney(2)|large_intestine(7)|lung(12)|ovary(2)|skin(1)|urinary_tract(2)	28						TTTGGATCGCGTCCCACTAGG	0.353000													22	64					0	0	1	0	0
OSBPL11	114885	broad.mit.edu	37	3	125286305	125286305	+	Missense_Mutation	SNP	G	G	C			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr3:125286305G>C	ENST00000296220.5	-	6	1090	c.801C>G	c.(799-801)tgC>tgG	p.C267W		NM_022776.4	NP_073613.2	Q9BXB4	OSB11_HUMAN	oxysterol binding protein-like 11	267					lipid transport		lipid binding			NS(1)|breast(1)|cervix(1)|kidney(2)|large_intestine(8)|lung(9)|ovary(3)|prostate(1)|skin(1)	27						AGTCATTTAAGCAGTTCATAG	0.418000													8	87					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35785414	35785414	+	Silent	SNP	C	C	T			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr3:35785414C>T	ENST00000187397.4	+	18	2445	c.1989C>T	c.(1987-1989)aaC>aaT	p.N663N	ARPP21_ENST00000337271.5_Silent_p.N644N|ARPP21_ENST00000444190.1_Silent_p.N644N|ARPP21_ENST00000458225.1_Silent_p.N664N|ARPP21_ENST00000417925.1_Silent_p.N664N	NM_016300.4	NP_057384.2	Q9UBL0	ARP21_HUMAN	cAMP-regulated phosphoprotein, 21kDa	663	Gln-rich.					cytoplasm	nucleic acid binding	p.N663N(1)		cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(12)|lung(31)|ovary(3)|prostate(4)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	61						TTCAGTACAACGCTCAGAGGA	0.502000													13	73					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71508119	71508119	+	Silent	SNP	A	A	C			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr4:71508119A>C	ENST00000396073.3	+	9	1257	c.976A>C	c.(976-978)Aga>Cga	p.R326R	ENAM_ENST00000472903.1_Intron	NM_031889.2	NP_114095.2	Q9NRM1	ENAM_HUMAN	enamelin	326					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			haematopoietic_and_lymphoid_tissue(1)|ovary(3)|upper_aerodigestive_tract(2)	6			Lung(101;0.235)			TCCTAATATAAGAAATTTTCC	0.453000													13	64					0	0	1	0	0
HNRNPR	10236	broad.mit.edu	37	1	23637069	23637069	+	Frame_Shift_Del	DEL	A	A	-			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr1:23637069delA	ENST00000478691.1	-	10	1757	c.1486delT	c.(1486-1488)ggfs	p.W496fs	HNRNPR_ENST00000427764.2_Frame_Shift_Del_p.W556fs|HNRNPR_ENST00000426846.2_Frame_Shift_Del_p.W434fs|HNRNPR_ENST00000606561.1_Frame_Shift_Del_p.W455fs|HNRNPR_ENST00000374612.1_Frame_Shift_Del_p.W594fs|HNRNPR_ENST00000374616.3_Frame_Shift_Del_p.W597fs|HNRNPR_ENST00000302271.6_Frame_Shift_Del_p.W594fs|HNRNPR_ENST00000476660.1_5'UTR	NM_001102397.1|NM_001102399.1	NP_001095867.1|NP_001095869.1	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	594	3 X 11 AA approximate repeats of D-D-Y-Y- G-Y-D-Y-H-D-Y.|RNA-binding RGG-box.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(8)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	19		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		TGGGAACCCCAGTTCTGTTGG	0.502													23	145	---	---	---	---					
KIDINS220	57498	broad.mit.edu	37	2	8910799	8910810	+	Splice_Site	DEL	CCTTTCGTAGAT	CCTTTCGTAGAT	-			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr2:8910799_8910810delCCTTTCGTAGAT	ENST00000256707.3	-	22	3182_3193	c.3011_splice	c.e22+1	p.1001_splice	KIDINS220_ENST00000473731.1_Splice_Site_p.1001_splice|KIDINS220_ENST00000427284.1_Splice_Site_p.1001_splice|KIDINS220_ENST00000418530.1_Splice_Site_p.959_splice|KIDINS220_ENST00000319688.5_Splice_Site_p.1002_splice	NM_020738.2	NP_065789.1	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate, 220kDa	1001					activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane		p.E1003K(1)		NS(1)|breast(1)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(11)|lung(25)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	60	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					ACAAAAGGTACCTTTCGTAGATGGTTTTTAAT	0.325													7	34	---	---	---	---					
ADH1C	126	broad.mit.edu	37	4	100261040	100261041	+	RNA	INS	-	-	A	rs138827617	by1000genomes	TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr4:100261040_100261041insA	ENST00000515683.1	-	0	1316					NM_000669.3	NP_000660.1	P00326	ADH1G_HUMAN	alcohol dehydrogenase 1C (class I), gamma polypeptide						ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding								OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	AGTGCTTTCACAAAAAAAATCA	0.327													2	4	---	---	---	---					
ZSCAN10	84891	broad.mit.edu	37	16	3140425	3140425	+	Frame_Shift_Del	DEL	C	C	-			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr16:3140425delC	ENST00000252463.2	-	5	932	c.845delG	c.(844-846)gcfs	p.G282fs	ZSCAN10_ENST00000575108.1_5'UTR|ZSCAN10_ENST00000538082.2_Frame_Shift_Del_p.G200fs	NM_032805.1	NP_116194.1	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	282					negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)|cervix(3)|endometrium(3)|kidney(1)|lung(8)|ovary(2)|prostate(1)|skin(4)|urinary_tract(1)	24						CTCGGGGACGCCCTCAGCCAC	0.657													9	102	---	---	---	---					
GRIN3B	116444	broad.mit.edu	37	19	1009186	1009188	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr19:1009186_1009188delAGC	ENST00000234389.3	+	9	2736_2738	c.2717_2719delAGC	c.(2716-2721)gag>g	p.EQ906del		NM_138690.1	NP_619635.1	O60391	NMD3B_HUMAN	glutamate receptor, ionotropic, N-methyl-D-aspartate 3B	906					ionotropic glutamate receptor signaling pathway|protein insertion into membrane|regulation of calcium ion transport	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|ionotropic glutamate receptor activity|neurotransmitter receptor activity			breast(1)|kidney(1)|lung(7)|prostate(1)|upper_aerodigestive_tract(1)	11		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	Glycine(DB00145)|L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	CCCGAGGTGGagcagcagcagca	0.744													4	3	---	---	---	---					
NRIP1	8204	broad.mit.edu	37	21	16339835	16339835	+	Frame_Shift_Del	DEL	T	T	-			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr21:16339835delT	ENST00000400202.1	-	3	1391	c.679delA	c.(679-681)cafs	p.T227fs	NRIP1_ENST00000318948.4_Frame_Shift_Del_p.T227fs|NRIP1_ENST00000400199.1_Frame_Shift_Del_p.T227fs			P48552	NRIP1_HUMAN	nuclear receptor interacting protein 1	227	Repression domain 1.				androgen receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		androgen receptor binding|estrogen receptor binding|glucocorticoid receptor binding|transcription coactivator activity|transcription corepressor activity			cervix(3)|haematopoietic_and_lymphoid_tissue(2)|kidney(5)|large_intestine(6)|lung(13)|prostate(4)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(4)	39				Epithelial(23;1.19e-05)|all cancers(11;4.64e-05)|COAD - Colon adenocarcinoma(22;0.000232)|Colorectal(24;0.0006)|OV - Ovarian serous cystadenocarcinoma(11;0.00418)|Lung(58;0.199)|LUSC - Lung squamous cell carcinoma(23;0.24)		ATGACCTTTGTTCCACTTTGT	0.443													39	112	---	---	---	---					
MAPK8IP2	23542	broad.mit.edu	37	22	51041769	51041771	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chr22:51041769_51041771delGAG	ENST00000329492.3	+	3	406_408	c.289_291delGAG	c.(289-291)del	p.E103del	MAPK8IP2_ENST00000399908.2_5'UTR|MAPK8IP2_ENST00000442429.2_In_Frame_Del_p.E103del|MAPK8IP2_ENST00000341339.4_Intron|MAPK8IP2_ENST00000008876.5_In_Frame_Del_p.E76del|MAPK8IP2_ENST00000399912.1_5'UTR	NM_012324.3	NP_036456.1	Q13387	JIP2_HUMAN	mitogen-activated protein kinase 8 interacting protein 2	103	Asp/Glu-rich (acidic).				behavioral fear response|dendrite morphogenesis|MAPKKK cascade|nonassociative learning|positive regulation of anti-apoptosis|regulation of excitatory postsynaptic membrane potential|regulation of JNK cascade|regulation of receptor activity|regulation of synaptic transmission, glutamatergic|signal complex assembly|social behavior	cytoplasm|postsynaptic density	beta-amyloid binding|kinesin binding|MAP-kinase scaffold activity|protein kinase activator activity|protein kinase binding	p.E97delE(1)		central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(2)	7		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		OV - Ovarian serous cystadenocarcinoma(4;1.28e-70)|Epithelial(4;3.46e-65)|GBM - Glioblastoma multiforme(4;4.83e-06)|Lung(4;0.125)|BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ggacgaggaagaggaggaggagg	0.631													2	4	---	---	---	---					
MAGED1	9500	broad.mit.edu	37	X	51637410	51637410	+	Frame_Shift_Del	DEL	A	A	-			TCGA-V1-A9O9-01A-11D-A41K-08	TCGA-V1-A9O9-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	fcad0c26-dab3-4bf0-9ef6-a5be33131a61	8636a67d-a41b-4d6d-ad70-2f28e9aeda6e	g.chrX:51637410delA	ENST00000375695.2	+	2	163	c.10delA	c.(10-12)aafs	p.K4fs	MAGED1_ENST00000326587.7_Frame_Shift_Del_p.K4fs|MAGED1_ENST00000494718.1_3'UTR|MAGED1_ENST00000375722.1_Frame_Shift_Del_p.K4fs|MAGED1_ENST00000375772.3_Frame_Shift_Del_p.K4fs	NM_001005333.1	NP_001005333.1	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1	0					apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			breast(1)|endometrium(4)|large_intestine(10)|lung(13)|ovary(3)|upper_aerodigestive_tract(1)	32	Ovarian(276;0.236)					CATGGCTCAGAAAATGGACTG	0.627										Multiple Myeloma(10;0.10)	OREG0019786	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	2	4	---	---	---	---					
