Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
FUT7	2529	broad.mit.edu	37	9	139925558	139925558	+	Silent	SNP	G	G	A	rs144968285		TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr9:139925558G>A	ENST00000314412.6	-	2	1651	c.633C>T	c.(631-633)tgC>tgT	p.C211C	C9orf139_ENST00000314330.2_Intron	NM_004479.3	NP_004470.1	Q11130	FUT7_HUMAN	fucosyltransferase 7 (alpha (1,3) fucosyltransferase)	211					L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			NS(1)|endometrium(1)|lung(4)|ovary(1)|skin(1)	8	all_cancers(76;0.0893)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.96e-05)|Epithelial(140;0.000486)		GGCAGCTGGCGCACAGTGGCC	0.627000													15	146					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15276799	15276799	+	Silent	SNP	G	G	A	rs148053028		TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr19:15276799G>A	ENST00000263388.2	-	30	5541	c.5466C>T	c.(5464-5466)tcC>tcT	p.S1822S		NM_000435.2	NP_000426.2	Q9UM47	NOTC3_HUMAN	notch 3	1822					Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			breast(4)|central_nervous_system(3)|endometrium(10)|kidney(3)|large_intestine(16)|liver(1)|lung(31)|ovary(8)|prostate(3)|skin(7)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(1)	93			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			AGATCAGGTCGGAGATGATGC	0.602000													8	18					0	0	1	0	0
ANKZF1	55139	broad.mit.edu	37	2	220098130	220098130	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr2:220098130G>A	ENST00000323348.5	+	7	968	c.794G>A	c.(793-795)cGc>cAc	p.R265H	ANKZF1_ENST00000409849.1_Missense_Mutation_p.R55H|ANKZF1_ENST00000410034.3_Missense_Mutation_p.R265H	NM_018089.2	NP_060559.2	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing 1	265						intracellular	zinc ion binding	p.R265L(1)		breast(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(8)|ovary(2)|prostate(1)|skin(1)|urinary_tract(1)	23		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AACCTGAGGCGCTACAATGAA	0.512000													8	18					0	0	1	0	0
FARS2	10667	broad.mit.edu	37	6	5369234	5369234	+	Missense_Mutation	SNP	A	A	G			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr6:5369234A>G	ENST00000324331.6	+	2	767	c.431A>G	c.(430-432)tAt>tGt	p.Y144C	FARS2_ENST00000274680.4_Missense_Mutation_p.Y144C			O95363	SYFM_HUMAN	phenylalanyl-tRNA synthetase 2, mitochondrial	144					phenylalanyl-tRNA aminoacylation|tRNA processing	mitochondrial matrix|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding			endometrium(3)|kidney(1)|large_intestine(5)|lung(3)|prostate(1)|stomach(2)	15	Ovarian(93;0.11)	all_hematologic(90;0.0104)			L-Phenylalanine(DB00120)	GGGGACAACTATTACCTGAAT	0.572000													18	43					0	0	1	0	0
DEFB129	140881	broad.mit.edu	37	20	207948	207948	+	Missense_Mutation	SNP	A	A	G			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr20:207948A>G	ENST00000246105.4	+	1	50	c.19A>G	c.(19-21)Atc>Gtc	p.I7V		NM_080831.3	NP_543021.1	Q9H1M3	DB129_HUMAN	defensin, beta 129	7					defense response to bacterium	extracellular region				endometrium(2)|kidney(1)|large_intestine(2)|liver(1)|lung(1)|ovary(1)|stomach(1)	9		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.122)			CCTTTTTCCTATCTTTGCCAG	0.498000													11	73					0	0	1	0	0
CCDC13	152206	broad.mit.edu	37	3	42751216	42751216	+	Missense_Mutation	SNP	C	C	G			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr3:42751216C>G	ENST00000310232.6	-	15	2031	c.1948G>C	c.(1948-1950)Gat>Cat	p.D650H		NM_144719.3	NP_653320.3	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	650										endometrium(1)|kidney(1)|large_intestine(5)|liver(1)|lung(11)|ovary(1)|prostate(3)|skin(1)|urinary_tract(1)	25						ACGGGCACATCGGAGAGCTGG	0.592000													6	81					0	0	1	0	0
LPP	4026	broad.mit.edu	37	3	188242556	188242556	+	Missense_Mutation	SNP	A	A	G			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr3:188242556A>G	ENST00000312675.4	+	5	656	c.410A>G	c.(409-411)tAt>tGt	p.Y137C	LPP_ENST00000448637.1_Missense_Mutation_p.Y137C|LPP_ENST00000543006.1_Missense_Mutation_p.Y137C	NM_001167672.1|NM_005578.3	NP_001161144.1|NP_005569.1	Q93052	LPP_HUMAN	LIM domain containing preferred translocation partner in lipoma	137	Pro-rich.				cell adhesion	cytoplasm|focal adhesion|nucleus	protein binding|zinc ion binding		HMGA2/LPP(161)	NS(1)|breast(1)|large_intestine(3)|lung(2)|ovary(1)|upper_aerodigestive_tract(2)	10	all_cancers(143;1.37e-09)|all_hematologic(3;0.0429)|Ovarian(172;0.088)	all_lung(153;0.00139)|Lung NSC(153;0.00202)		GBM - Glioblastoma multiforme(93;0.00602)		AGCTCCCCCTATAAGCCTCGG	0.537000			T	"""HMGA2, MLL, C12orf9"""	"""lipoma, leukemia"""								30	110					0	0	1	0	0
LPGAT1	9926	broad.mit.edu	37	1	211923271	211923271	+	Silent	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr1:211923271G>A	ENST00000366997.4	-	8	1309	c.1083C>T	c.(1081-1083)atC>atT	p.I361I	LPGAT1_ENST00000366996.1_Silent_p.I361I	NM_014873.2	NP_055688.1	Q92604	LGAT1_HUMAN	lysophosphatidylglycerol acyltransferase 1	361					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			breast(1)|endometrium(2)|large_intestine(1)|lung(7)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	16				OV - Ovarian serous cystadenocarcinoma(81;0.00773)|all cancers(67;0.0765)|Epithelial(68;0.114)		AATACTGAATGATGTTGTACC	0.398000													4	125					0	0	1	0	0
FAM102B	284611	broad.mit.edu	37	1	109143213	109143213	+	Missense_Mutation	SNP	C	C	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr1:109143213C>A	ENST00000370035.3	+	2	503	c.163C>A	c.(163-165)Cgc>Agc	p.R55S	FAM102B_ENST00000405454.1_Missense_Mutation_p.R55S	NM_001010883.2	NP_001010883.2	Q5T8I3	F102B_HUMAN	family with sequence similarity 102, member B	55										autonomic_ganglia(1)|kidney(1)|large_intestine(1)|lung(1)|skin(1)	5		all_epithelial(167;5.52e-05)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0217)|Lung(183;0.109)|COAD - Colon adenocarcinoma(174;0.141)|Epithelial(280;0.182)		AAACTGTGTTCGCTGGAGAAA	0.398000													3	55					0.115264	0.115264	1	1	0
OR6S1	341799	broad.mit.edu	37	14	21109704	21109704	+	Silent	SNP	C	C	G			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr14:21109704C>G	ENST00000320704.3	-	1	146	c.147G>C	c.(145-147)ggG>ggC	p.G49G		NM_001001968.1	NP_001001968.1	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S, member 1	49					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)|large_intestine(3)|lung(13)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(2)	23	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		CCCTTACCACCCCCACAATCA	0.463000													24	64					0	0	1	0	0
FRK	2444	broad.mit.edu	37	6	116263608	116263608	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr6:116263608G>A	ENST00000606080.1	-	8	1933	c.1487C>T	c.(1486-1488)tCa>tTa	p.S496L	FRK_ENST00000538210.1_Missense_Mutation_p.S354L	NM_002031.2	NP_002022.1	P42685	FRK_HUMAN	fyn-related kinase	496					negative regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			breast(1)|endometrium(4)|kidney(2)|large_intestine(4)|lung(10)|ovary(3)|pancreas(1)|skin(1)|urinary_tract(1)	27		all_cancers(87;0.00559)|all_epithelial(87;0.00738)|Colorectal(196;0.0465)		all cancers(137;0.0128)|OV - Ovarian serous cystadenocarcinoma(136;0.0209)|GBM - Glioblastoma multiforme(226;0.0459)|Epithelial(106;0.0625)		ATCTGAATATGAAGAGTCTGT	0.343000													19	56					0	0	1	0	0
DPP9	91039	broad.mit.edu	37	19	4694806	4694806	+	Silent	SNP	T	T	C			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr19:4694806T>C	ENST00000262960.9	-	13	1660	c.1383A>G	c.(1381-1383)caA>caG	p.Q461Q	DPP9_ENST00000598800.1_Silent_p.Q432Q|DPP9_ENST00000597849.1_Silent_p.Q461Q|DPP9_ENST00000594671.1_Silent_p.Q432Q	NM_139159.4	NP_631898.3	Q86TI2	DPP9_HUMAN	dipeptidyl-peptidase 9	432				L -> F (in Ref. 7; CAD39039).	proteolysis	cytosol|membrane	aminopeptidase activity|serine-type peptidase activity			cervix(2)|endometrium(3)|kidney(3)|large_intestine(2)|lung(6)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	20		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00884)		CTCCCTCTGATTGGGGGAAGG	0.532000													15	19					0	0	1	0	0
NPAS4	266743	broad.mit.edu	37	11	66190206	66190206	+	Missense_Mutation	SNP	C	C	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr11:66190206C>A	ENST00000311034.2	+	4	668	c.492C>A	c.(490-492)aaC>aaA	p.N164K		NM_178864.3	NP_849195.2	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	164					transcription, DNA-dependent		DNA binding|signal transducer activity			breast(4)|endometrium(2)|kidney(3)|large_intestine(11)|liver(2)|lung(20)|ovary(1)|prostate(3)|skin(3)	49						GTGCAGGCAACAAACTCGTGC	0.552000													14	34					1.15088e-07	1.24174e-07	1	1	0
MRPS18B	28973	broad.mit.edu	37	6	30593484	30593484	+	Silent	SNP	C	C	T	rs148815125	byFrequency	TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr6:30593484C>T	ENST00000259873.4	+	7	844	c.687C>T	c.(685-687)ggC>ggT	p.G229G	MRPS18B_ENST00000506373.2_3'UTR|MRPS18B_ENST00000472229.1_3'UTR	NM_014046.3	NP_054765.1	Q9Y676	RT18B_HUMAN	mitochondrial ribosomal protein S18B	229					translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome			endometrium(1)|kidney(1)|large_intestine(1)|lung(5)|ovary(2)|prostate(1)|skin(2)	13						AAGAGAGTGGCCCCCCACCTG	0.592000													13	67					0	0	1	0	0
PRDM2	7799	broad.mit.edu	37	1	14108529	14108529	+	Silent	SNP	G	G	C			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr1:14108529G>C	ENST00000235372.7	+	8	5095	c.4239G>C	c.(4237-4239)tcG>tcC	p.S1413S	PRDM2_ENST00000413440.1_Silent_p.S1212S|PRDM2_ENST00000311066.5_Silent_p.S1413S|PRDM2_ENST00000503842.1_Intron|PRDM2_ENST00000343137.4_Silent_p.S1212S|PRDM2_ENST00000376048.5_Intron|PRDM2_ENST00000505823.1_Intron	NM_012231.4	NP_036363.2	Q13029	PRDM2_HUMAN	PR domain containing 2, with ZNF domain	1413	Arg/Lys-rich (basic).					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.S1413S(1)		endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(16)|lung(20)|ovary(3)|prostate(3)|skin(1)|urinary_tract(2)	55	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		GCAAAATGTCGTCGAATAAGC	0.393000													30	55					0	0	1	0	0
DPM1	8813	broad.mit.edu	37	20	49557452	49557452	+	Missense_Mutation	SNP	T	T	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr20:49557452T>A	ENST00000371582.4	-	8	625	c.594A>T	c.(592-594)ttA>ttT	p.L198F	DPM1_ENST00000466152.1_5'UTR|RP5-914P20.5_ENST00000558899.2_RNA|DPM1_ENST00000371588.5_Missense_Mutation_p.L171F|DPM1_ENST00000371583.5_Missense_Mutation_p.L166F			O60762	DPM1_HUMAN	dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit	171					C-terminal protein lipidation|dolichol metabolic process|dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|protein N-linked glycosylation via asparagine|protein O-linked mannosylation	dolichol-phosphate-mannose synthase complex|endoplasmic reticulum membrane|membrane fraction	dolichyl-phosphate beta-D-mannosyltransferase activity|dolichyl-phosphate-mannose-protein mannosyltransferase activity|protein binding			endometrium(1)|large_intestine(1)|lung(2)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(1)	7						AGATCTGAGTTAAAAAATTGG	0.343000													26	64					0	0	1	0	0
CCR5	1234	broad.mit.edu	37	3	46415244	46415244	+	Missense_Mutation	SNP	C	C	G			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr3:46415244C>G	ENST00000343801.4	+	3	1208	c.851C>G	c.(850-852)aCt>aGt	p.T284S	CCR5_ENST00000445772.1_Missense_Mutation_p.T284S|CCR5_ENST00000292303.4_Missense_Mutation_p.T284S|RP11-24F11.2_ENST00000451485.1_RNA	NM_000579.3	NP_000570.1	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5 (gene/pseudogene)	284					cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			central_nervous_system(1)|large_intestine(2)|lung(13)|prostate(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	20				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	GTGACAGAGACTCTTGGGATG	0.468000													26	269					0	0	1	0	0
LGI1	9211	broad.mit.edu	37	10	95518093	95518093	+	Silent	SNP	C	C	G			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr10:95518093C>G	ENST00000371418.4	+	1	452	c.192C>G	c.(190-192)acC>acG	p.T64T	LGI1_ENST00000371413.3_Silent_p.T64T|LGI1_ENST00000478763.1_3'UTR|LGI1_ENST00000542308.1_Silent_p.T64T	NM_005097.2	NP_005088.1	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1	64	LRRNT.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			central_nervous_system(1)|endometrium(1)|large_intestine(6)|lung(18)|ovary(2)|skin(1)	29		Colorectal(252;0.124)				TTCCACGCACCGTTCCTCCTG	0.438000													7	78					0	0	1	0	0
NDUFA9	4704	broad.mit.edu	37	12	4771727	4771727	+	Missense_Mutation	SNP	C	C	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr12:4771727C>A	ENST00000266544.5	+	6	601	c.581C>A	c.(580-582)gCa>gAa	p.A194E		NM_005002.4	NP_004993.1	Q16795	NDUA9_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa	194					mitochondrial electron transport, NADH to ubiquinone|sodium ion transport	mitochondrial matrix|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity|protein binding			NS(1)|breast(1)|endometrium(3)|large_intestine(4)|lung(9)|ovary(1)|pancreas(1)|upper_aerodigestive_tract(1)	21					NADH(DB00157)	GTGAGAGATGCATTTCCGGAA	0.373000													4	102					0.014758	0.0151269	1	1	0
AK8	158067	broad.mit.edu	37	9	135730299	135730299	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr9:135730299G>A	ENST00000298545.3	-	5	868	c.347C>T	c.(346-348)gCg>gTg	p.A116V	AK8_ENST00000477396.1_5'UTR	NM_152572.2	NP_689785.1	Q96MA6	KAD8_HUMAN	adenylate kinase 8	116						cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			NS(1)|kidney(2)|large_intestine(4)|lung(11)|pancreas(2)|prostate(1)|urinary_tract(2)	23						GACGAGCAGCGCGCTGGGAAC	0.547000													13	28					0	0	1	0	0
TRAPPC12	51112	broad.mit.edu	37	2	3391659	3391659	+	Missense_Mutation	SNP	C	C	T			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr2:3391659C>T	ENST00000324266.5	+	2	460	c.265C>T	c.(265-267)Cgg>Tgg	p.R89W	TRAPPC12_ENST00000382110.2_Missense_Mutation_p.R89W	NM_016030.5	NP_057114.5	Q8WVT3	TTC15_HUMAN	trafficking protein particle complex 12	89							binding										GGGCCGAGTGCGGGACGAAGC	0.711000													2	2					0	0	1	0	0
MSANTD4	84437	broad.mit.edu	37	11	105880318	105880318	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr11:105880318G>A	ENST00000301919.4	-	3	2397	c.982C>T	c.(982-984)Cgc>Tgc	p.R328C	MSANTD4_ENST00000529805.1_5'UTR	NM_032424.1	NP_115800.1	Q8NCY6	K1826_HUMAN	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	328						nucleus											ACCTGTAAGCGTTCCTTTTCA	0.393000													17	72					0	0	1	0	0
TUBG2	27175	broad.mit.edu	37	17	40818390	40818390	+	Missense_Mutation	SNP	T	T	G			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr17:40818390T>G	ENST00000251412.7	+	10	1245	c.1046T>G	c.(1045-1047)aTc>aGc	p.I349S		NM_016437.2	NP_057521.1	Q9NRH3	TBG2_HUMAN	tubulin, gamma 2	349					G2/M transition of mitotic cell cycle|microtubule-based process|protein polymerization	cytosol	GTP binding|GTPase activity|structural molecule activity			central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(8)|ovary(1)	15		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.141)		GCCAACTTCATCCCGTGGGGC	0.662000													13	25					0	0	1	0	0
LCT	3938	broad.mit.edu	37	2	136567051	136567051	+	Missense_Mutation	SNP	A	A	C			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr2:136567051A>C	ENST00000264162.2	-	8	2876	c.2866T>G	c.(2866-2868)Tat>Gat	p.Y956D		NM_002299.2	NP_002290.2	P09848	LPH_HUMAN	lactase	956	4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			breast(6)|central_nervous_system(3)|cervix(1)|endometrium(8)|kidney(2)|large_intestine(26)|lung(57)|ovary(7)|pancreas(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(4)|urinary_tract(4)	124				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGCTGGTGATAGCTGTCACAG	0.527000													25	56					0	0	1	0	0
COL27A1	85301	broad.mit.edu	37	9	116931620	116931620	+	Silent	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr9:116931620G>A	ENST00000356083.3	+	3	2176	c.1785G>A	c.(1783-1785)gcG>gcA	p.A595A		NM_032888.2	NP_116277.2	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1	595	Pro-rich.				cell adhesion		extracellular matrix structural constituent			central_nervous_system(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(17)|lung(30)|ovary(4)|prostate(6)|skin(3)|soft_tissue(1)|stomach(1)|urinary_tract(3)	80						TGGCCCCGGCGCAATTCCTGT	0.657000													23	52					0	0	1	0	0
ZNF91	7644	broad.mit.edu	37	19	23544340	23544340	+	Missense_Mutation	SNP	T	T	C			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr19:23544340T>C	ENST00000300619.7	-	4	1646	c.1441A>G	c.(1441-1443)Aag>Gag	p.K481E	ZNF91_ENST00000397082.2_Missense_Mutation_p.K449E|ZNF91_ENST00000599743.1_Intron	NM_003430.2	NP_003421.2	Q05481	ZNF91_HUMAN	zinc finger protein 91	481						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding						all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				TGTATCCTCTTATGTCTAGTT	0.363000													31	70					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212293169	212293169	+	Missense_Mutation	SNP	T	T	C			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr2:212293169T>C	ENST00000342788.4	-	22	2993	c.2683A>G	c.(2683-2685)Agg>Ggg	p.R895G	ERBB4_ENST00000402597.1_Missense_Mutation_p.R885G|ERBB4_ENST00000436443.1_Missense_Mutation_p.R895G	NM_005235.2	NP_005226.1	Q15303	ERBB4_HUMAN	v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4	895	Protein kinase.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			NS(1)|breast(7)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(31)|lung(71)|pancreas(1)|prostate(3)|skin(39)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	179		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		GTGAATTTCCTGTAATGTATA	0.299000										TSP Lung(8;0.080)			29	94					0	0	1	0	0
AGO4	192670	broad.mit.edu	37	1	36307352	36307352	+	Splice_Site	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr1:36307352G>A	ENST00000373210.3	+	15	2420		c.e15+1		AGO4_ENST00000488778.1_Splice_Site	NM_017629.3	NP_060099.2			argonaute RISC catalytic component 4																		AACAGAAAGGGTAAGAAGATA	0.313000													13	54					0	0	1	0	0
FH	2271	broad.mit.edu	37	1	241671932	241671932	+	Missense_Mutation	SNP	G	G	T			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr1:241671932G>T	ENST00000366560.3	-	5	747	c.709C>A	c.(709-711)Cag>Aag	p.Q237K		NM_000143.3	NP_000134.2	P07954	FUMH_HUMAN	fumarate hydratase	237					fumarate metabolic process|tricarboxylic acid cycle	cell junction|mitochondrial matrix|tricarboxylic acid cycle enzyme complex	fumarate hydratase activity			biliary_tract(1)|endometrium(5)|kidney(1)|large_intestine(5)|lung(11)|ovary(1)|skin(2)	26	Ovarian(103;0.103)	all_cancers(173;2.37e-314)|all_epithelial(177;5.17e-286)|Breast(1374;1.06e-10)|Acute lymphoblastic leukemia(190;4.93e-10)|all_neural(198;0.00118)	OV - Ovarian serous cystadenocarcinoma(106;0.0214)	Colorectal(1306;2.33e-53)|COAD - Colon adenocarcinoma(196;1.05e-44)|KIRC - Kidney renal clear cell carcinoma(1967;0.000109)		ACAGCATCCTGAGTATGAGTA	0.398000			"""Mis, N, F"""			"""lieomyomatosis, renal"""			Hereditary Leiomyomatosis and Renal Cell Cancer				5	62					1.23904e-05	1.30258e-05	1	1	0
SALL1	6299	broad.mit.edu	37	16	51175661	51175661	+	Missense_Mutation	SNP	T	T	C	rs139646526	byFrequency	TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr16:51175661T>C	ENST00000440970.1	-	2	612	c.181A>G	c.(181-183)Agc>Ggc	p.S61G	SALL1_ENST00000541611.1_Intron|SALL1_ENST00000251020.4_Missense_Mutation_p.S158G|SALL1_ENST00000566102.1_Intron	NM_001127892.1	NP_001121364.1	Q9NSC2	SALL1_HUMAN	spalt-like transcription factor 1	158					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(4)|breast(2)|central_nervous_system(2)|endometrium(3)|kidney(5)|large_intestine(25)|lung(61)|ovary(3)|prostate(6)|skin(12)|upper_aerodigestive_tract(3)	126		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ccgccgctgctgctgctgctg	0.632000													4	43					0	0	1	0	0
CUL3	8452	broad.mit.edu	37	2	225371708	225371708	+	Missense_Mutation	SNP	A	A	C			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr2:225371708A>C	ENST00000264414.4	-	7	1234	c.896T>G	c.(895-897)aTg>aGg	p.M299R	CUL3_ENST00000409096.1_Missense_Mutation_p.M275R|CUL3_ENST00000409777.1_Missense_Mutation_p.M275R|CUL3_ENST00000344951.4_Missense_Mutation_p.M233R	NM_003590.4	NP_003581.1	Q13618	CUL3_HUMAN	cullin 3	299					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding	p.M299R(1)		endometrium(6)|haematopoietic_and_lymphoid_tissue(3)|kidney(7)|large_intestine(2)|liver(1)|lung(19)|ovary(1)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)	46		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		TAACTTGTACATGCAACCAAG	0.358000													11	29					0	0	1	0	0
WDR93	56964	broad.mit.edu	37	15	90258216	90258216	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr15:90258216G>A	ENST00000268130.7	+	6	747	c.646G>A	c.(646-648)Gga>Aga	p.G216R	WDR93_ENST00000560294.1_Missense_Mutation_p.G216R	NM_020212.1	NP_064597.1	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	216					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			NS(1)|breast(3)|endometrium(2)|kidney(4)|large_intestine(5)|liver(2)|lung(8)|ovary(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(2)	33	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			TGCAGGAGCCGGAGATATTTG	0.453000													8	29					0	0	1	0	0
PRSS8	5652	broad.mit.edu	37	16	31143854	31143854	+	Missense_Mutation	SNP	A	A	T			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr16:31143854A>T	ENST00000317508.6	-	5	864	c.601T>A	c.(601-603)Tgt>Agt	p.C201S	PRSS8_ENST00000568261.1_Missense_Mutation_p.C147S	NM_002773.3	NP_002764.1	Q16651	PRSS8_HUMAN	protease, serine, 8	201	Peptidase S1.				proteolysis	extracellular space|integral to membrane|plasma membrane	serine-type endopeptidase activity			breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(2)|skin(1)|upper_aerodigestive_tract(1)	8						AGGCAGTTACACGTCTCACGA	0.607000													20	51					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41615618	41615618	+	Missense_Mutation	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr8:41615618G>A	ENST00000396942.1	-	2	148	c.65C>T	c.(64-66)tCa>tTa	p.S22L	ANK1_ENST00000347528.4_Missense_Mutation_p.S22L|ANK1_ENST00000265709.8_Missense_Mutation_p.S55L|ANK1_ENST00000289734.7_Missense_Mutation_p.S22L|ANK1_ENST00000379758.2_Missense_Mutation_p.S22L|ANK1_ENST00000352337.4_Missense_Mutation_p.S22L|ANK1_ENST00000396945.1_Missense_Mutation_p.S22L			P16157	ANK1_HUMAN	ankyrin 1, erythrocytic	22	89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton	p.S22L(1)|p.S55L(1)		breast(5)|central_nervous_system(4)|endometrium(9)|kidney(1)|large_intestine(26)|lung(62)|ovary(3)|prostate(5)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(3)	122	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CAAGTTACCTGATCTTGCTGC	0.507000													25	807					0	0	1	0	0
FBXO42	54455	broad.mit.edu	37	1	16621337	16621337	+	Missense_Mutation	SNP	A	A	G			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr1:16621337A>G	ENST00000375592.3	-	4	659	c.443T>C	c.(442-444)tTc>tCc	p.F148S	FBXO42_ENST00000478089.1_5'UTR	NM_018994.1	NP_061867.1	Q6P3S6	FBX42_HUMAN	F-box protein 42	148										autonomic_ganglia(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(7)|lung(4)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(3)	26		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00475)|all_lung(284;0.00671)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0193)|Colorectal(212;3.16e-07)|COAD - Colon adenocarcinoma(227;1.46e-05)|BRCA - Breast invasive adenocarcinoma(304;4.37e-05)|Kidney(64;0.000246)|KIRC - Kidney renal clear cell carcinoma(64;0.00336)|STAD - Stomach adenocarcinoma(313;0.0139)|READ - Rectum adenocarcinoma(331;0.0693)		GAGGTCATTGAAAGCAGCATT	0.433000													3	60					0	0	1	0	0
SEMA7A	8482	broad.mit.edu	37	15	74703250	74703250	+	Silent	SNP	G	G	A			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr15:74703250G>A	ENST00000261918.4	-	14	2264	c.1716C>T	c.(1714-1716)caC>caT	p.H572H	SEMA7A_ENST00000543145.2_Silent_p.H558H|SEMA7A_ENST00000542748.1_Silent_p.H407H	NM_003612.3	NP_003603.1	O75326	SEM7A_HUMAN	semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)	572	Ig-like C2-type.				axon guidance|immune response|inflammatory response|integrin-mediated signaling pathway|positive regulation of axon extension|positive regulation of ERK1 and ERK2 cascade|positive regulation of macrophage cytokine production|regulation of inflammatory response	anchored to membrane|external side of plasma membrane	receptor activity			breast(3)|central_nervous_system(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(4)|large_intestine(3)|lung(12)|upper_aerodigestive_tract(1)	30						AGTAGGTGGCGTGGCGGGATT	0.622000													16	60					0	0	1	0	0
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr20:33345744C>T	ENST00000374796.2	-	8	3377	c.807G>A	c.(805-807)caG>caA	p.Q269Q	NCOA6_ENST00000359003.2_Silent_p.Q269Q			Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	269	CREBBP-binding region.|Gln-rich.|NCOA1-binding region.|TBP/GTF2A-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding	p.Q269Q(15)		NS(2)|breast(6)|central_nervous_system(3)|cervix(1)|endometrium(9)|kidney(8)|large_intestine(16)|lung(37)|ovary(4)|prostate(5)|skin(13)|upper_aerodigestive_tract(2)|urinary_tract(1)	107						gctgctgctgctgttgttgtt	0.537000													3	30					0	0	1	0	0
HLA-DRB6	0	broad.mit.edu	37	6	32523362	32523363	+	RNA	INS	-	-	GATA	rs142676080	by1000genomes	TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr6:32523362_32523363insGATA	ENST00000411500.1	-	0	458					NR_001298.1																						AAAGCAATGTGGATAAAGGGAC	0.431													3	5	---	---	---	---					
ABCA13	154664	broad.mit.edu	37	7	48411971	48411972	+	Frame_Shift_Ins	INS	-	-	T			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr7:48411971_48411972insT	ENST00000435803.1	+	33	11034_11035	c.11010_11011insT	c.(11008-11013)gcttttfs	p.AF3670fs		NM_152701.3	NP_689914.2	Q86UQ4	ABCAD_HUMAN	ATP-binding cassette, sub-family A (ABC1), member 13	3670					transport	integral to membrane	ATP binding|ATPase activity			breast(13)|central_nervous_system(8)|endometrium(25)|haematopoietic_and_lymphoid_tissue(4)|kidney(20)|large_intestine(51)|lung(100)|ovary(5)|pancreas(2)|prostate(22)|skin(10)|stomach(3)|upper_aerodigestive_tract(3)|urinary_tract(4)	270						TCTTGAGTGCATTTTTCAGCCA	0.426													18	182	---	---	---	---					
ELMSAN1	91748	broad.mit.edu	37	14	74186068	74186069	+	Frame_Shift_Ins	INS	-	-	T	rs111577434		TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr14:74186068_74186069insT	ENST00000286523.5	-	12	3855_3856	c.3073_3074insA	c.(3073-3075)agafs	p.R1025fs	ELMSAN1_ENST00000394071.2_Frame_Shift_Ins_p.R1025fs	NM_194278.3	NP_919254.2			ELM2 and Myb/SANT-like domain containing 1																		GAATGTCTCTGTTTTTTTCTTC	0.569													8	21	---	---	---	---					
IREB2	3658	broad.mit.edu	37	15	78786337	78786337	+	Frame_Shift_Del	DEL	T	T	-			TCGA-V1-A9Z7-01A-11D-A41K-08	TCGA-V1-A9Z7-10A-01D-A41N-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	10f30605-2413-49d7-a9e7-042fb7c2c336	87158802-66e8-4c56-9f08-3cb5033e6cb4	g.chr15:78786337delT	ENST00000258886.8	+	19	2560	c.2411delT	c.(2410-2412)ctfs	p.L804fs		NM_004136.2	NP_004127.1	P48200	IREB2_HUMAN	iron-responsive element binding protein 2	804							4 iron, 4 sulfur cluster binding|metal ion binding|protein binding			central_nervous_system(2)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(8)|liver(1)|lung(14)|prostate(2)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(3)	41				UCEC - Uterine corpus endometrioid carcinoma (272;0.232)		AATATCAAGCTTTTTAATAAG	0.363													25	55	---	---	---	---					
